spm12 - Segment - generic

None

Parameters

t1mri: ListOf( 4D Volume ) ( input )

bias_regulatisation: Choice ( input )

bias_FWHM: Choice ( input )

bias_saving: Choice ( input )

t1mri_bias_field: ListOf( 4D Volume ) ( optional, output )

t1mri_bias_corrected: ListOf( 4D Volume ) ( optional, output )

second_channel: ListOf( 4D Volume ) ( optional, input )

bias_regulatisation_2c: Choice ( optional, input )

bias_FWHM_2c: Choice ( optional, input )

bias_saving_2c: Choice ( optional, input )

t1mri_bias_field_2c: ListOf( 4D Volume ) ( optional, output )

t1mri_bias_corrected_2c: ListOf( 4D Volume ) ( optional, output )

TPM_template: 4D Volume ( input )

grey_gaussian_number: Choice ( input )

grey_native_type: Choice ( input )

grey_native: ListOf( 4D Volume ) ( output )

grey_dartel_imported: ListOf( 4D Volume ) ( optional, output )

grey_warped_type: Choice ( input )

grey_warped_unmodulated: ListOf( 4D Volume ) ( optional, output )

grey_warped_modulated: ListOf( 4D Volume ) ( optional, output )

white_gaussian_number: Choice ( input )

white_native_type: Choice ( input )

white_native: ListOf( 4D Volume ) ( output )

white_dartel_imported: ListOf( 4D Volume ) ( optional, output )

white_warped_type: Choice ( input )

white_warped_unmodulated: ListOf( 4D Volume ) ( optional, output )

white_warped_modulated: ListOf( 4D Volume ) ( optional, output )

csf_gaussian_number: Choice ( input )

csf_native_type: Choice ( input )

csf_native: ListOf( 4D Volume ) ( output )

csf_dartel_imported: ListOf( 4D Volume ) ( optional, output )

csf_warped_type: Choice ( input )

csf_warped_unmodulated: ListOf( 4D Volume ) ( optional, output )

csf_warped_modulated: ListOf( 4D Volume ) ( optional, output )

skull_gaussian_number: Choice ( input )

skull_native_type: Choice ( input )

skull_native: ListOf( 4D Volume ) ( output )

skull_dartel_imported: ListOf( 4D Volume ) ( optional, output )

skull_warped_type: Choice ( input )

skull_warped_unmodulated: ListOf( 4D Volume ) ( optional, output )

skull_warped_modulated: ListOf( 4D Volume ) ( optional, output )

scalp_gaussian_number: Choice ( input )

scalp_native_type: Choice ( input )

scalp_native: ListOf( 4D Volume ) ( output )

scalp_dartel_imported: ListOf( 4D Volume ) ( optional, output )

scalp_warped_type: Choice ( input )

scalp_warped_unmodulated: ListOf( 4D Volume ) ( optional, output )

scalp_warped_modulated: ListOf( 4D Volume ) ( optional, output )

background_gaussian_number: Choice ( input )

background_native_type: Choice ( input )

background_native: ListOf( 4D Volume ) ( optional, output )

background_dartel_imported: ListOf( 4D Volume ) ( optional, output )

background_warped_type: Choice ( input )

background_warped_unmodulated: ListOf( 4D Volume ) ( optional, output )

background_warped_modulated: ListOf( 4D Volume ) ( optional, output )

mrf: Float ( input )

clean_up: Choice ( input )

warping_regularisation: ListOf( Float ) ( input )

affine_regularisation: Choice ( input )

smoothness: Float ( input )

sampling_distance: Float ( input )

deformation_field_type: Choice ( input )

forward_field: ListOf( 4D Volume ) ( optional, output )

inverse_field: ListOf( 4D Volume ) ( optional, output )

seg8_mat: ListOf( Matlab SPM file ) ( optional, output )

batch_location: Matlab SPM script ( output )

Technical information

Toolbox : SPM

User level : 1

Identifier : SPM12Segment_generic

File name : brainvisa/toolboxes/spm/processes/spm12/spatial/SPM12Segment_generic.py

Supported file formats :

t1mri :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

t1mri_bias_field :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

t1mri_bias_corrected :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

second_channel :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

t1mri_bias_field_2c :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

t1mri_bias_corrected_2c :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

TPM_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

grey_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

grey_dartel_imported :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

grey_warped_unmodulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

grey_warped_modulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

white_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

white_dartel_imported :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

white_warped_unmodulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

white_warped_modulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

csf_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

csf_dartel_imported :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

csf_warped_unmodulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

csf_warped_modulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

skull_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

skull_dartel_imported :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

skull_warped_unmodulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

skull_warped_modulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

scalp_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

scalp_dartel_imported :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

scalp_warped_unmodulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

scalp_warped_modulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

background_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

background_dartel_imported :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

background_warped_unmodulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

background_warped_modulated :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

forward_field :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

inverse_field :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

seg8_mat :

Matlab file, Matlab file

batch_location :

Matlab script, Matlab script