Constellation Individual Clusters from atlas pipeline - MRtrix

None

Parameters

regions_nomenclature: Nomenclature ROIs File ( input )

outputs_database: Choice ( input )

study_name: OpenChoice ( input )

method: Choice ( input )

region: OpenChoice ( input )

tractography: Fascicles bundles ( input )

apply_weights: Boolean ( input )

weights_file: Fiber weights ( optional, input )

dw_to_mesh: Transform T2 Diffusion MR to Raw T1 MRI ( input )

individual_white_mesh: White Mesh ( input )

regions_parcellation: ROI Texture ( input )

atlas_matrix: Connectivity Matrix ( input )

filtered_reduced_group_profile: Connectivity ROI Texture ( input )

group_clustering: Connectivity ROI Texture ( input )

regions_selection: Choice ( input )

keep_regions: ListOf( OpenChoice ) ( input )

min_fibers_length: Float ( input )

smoothing: Float ( input )

kmax: Integer ( input )

normalize: Boolean ( input )

erase_smoothed_matrix: Boolean ( input )

complete_individual_matrix: Connectivity Matrix ( output )

complete_individual_smoothed_matrix: Connectivity Matrix ( output )

reduced_matrix: Connectivity Matrix ( output )

individual_clustering: Connectivity ROI Texture ( output )

Technical information

Toolbox : Constellation

User level : 0

Identifier : constel_indiv_clusters_from_atlas_pipeline_mrtrix

File name : brainvisa/toolboxes/constellation/processes/constel_indiv_clusters_from_atlas_pipeline_mrtrix.py

Supported file formats :

regions_nomenclature :

Text file, Text file

tractography :

Aims bundles, Aims bundles, Mrtrix tracts, Trackvis tracts

weights_file :

Text file, Text file

dw_to_mesh :

Transformation matrix, Transformation matrix

individual_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

regions_parcellation :

GIFTI file, GIFTI file, Texture

atlas_matrix :

gz compressed NIFTI-1 image, GIS image, NIFTI-1 image, gz compressed NIFTI-1 image

filtered_reduced_group_profile :

GIFTI file, GIFTI file, Texture

group_clustering :

GIFTI file, GIFTI file, Texture

complete_individual_matrix :

Sparse Matrix, Sparse Matrix

complete_individual_smoothed_matrix :

Sparse Matrix, Sparse Matrix

reduced_matrix :

gz compressed NIFTI-1 image, GIS image, NIFTI-1 image, gz compressed NIFTI-1 image

individual_clustering :

GIFTI file, GIFTI file, Texture