Sparse Individual Matrices and Profiles From Tracts.

None

Parameters

regions_nomenclature: Nomenclature ROIs File ( input )

region: String ( input )

oversampled_semilabeled_fibers: Filtered Fascicles Bundles ( input )

labeled_fibers: Filtered Fascicles Bundles ( input )

individual_white_mesh: White Mesh ( input )

dw_to_t1: Transform T2 Diffusion MR to Raw T1 MRI ( input )

regions_parcellation: ROI Texture ( input )

apply_weights: Boolean ( input )

labeled_fibers_weights: Fiber weights ( optional, input )

semilabeled_fibers_weights: Fiber weights ( optional, input )

matrix_semilabeled_fibers: Connectivity Matrix ( output )

matrix_labeled_fibers: Connectivity Matrix ( output )

profile_semilabeled_fibers: Connectivity Profile Texture ( output )

profile_labeled_fibers: Connectivity Profile Texture ( output )

complete_individual_matrix: Connectivity Matrix ( output )

Technical information

Toolbox : Constellation

User level : 2

Identifier : constel_sparse_individual_matrices_mrtrix

File name : brainvisa/toolboxes/constellation/processes/individual_pipelines/tools_mrtrix/constel_sparse_individual_matrices_mrtrix.py

Supported file formats :

regions_nomenclature :

Text file, Text file

oversampled_semilabeled_fibers :

Aims bundles, Aims bundles, Mrtrix tracts, Trackvis tracts

labeled_fibers :

Aims bundles, Aims bundles, Mrtrix tracts, Trackvis tracts

individual_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

dw_to_t1 :

Transformation matrix, Transformation matrix

regions_parcellation :

GIFTI file, GIFTI file, Texture

labeled_fibers_weights :

Text file, Text file

semilabeled_fibers_weights :

Text file, Text file

matrix_semilabeled_fibers :

Sparse Matrix, Sparse Matrix

matrix_labeled_fibers :

Sparse Matrix, Sparse Matrix

profile_semilabeled_fibers :

GIFTI file, GIFTI file, Texture

profile_labeled_fibers :

GIFTI file, GIFTI file, Texture

complete_individual_matrix :

Sparse Matrix, Sparse Matrix