Freesurfer / BrainVISA QC table

FreeSurfer / Brainvisa outputs conversion QC table: display present and missing data.

Description

See the Database QC table process for details.

Parameters

database: Choice ( input )

Database to be displayed

keys: ListOf( String ) ( input )

Keys are used to sort and display data. One data line will be created for a single keys values combination.

data_filters: ListOf( String ) ( optional, input )

Additional data filters, see the Database QC table process for details.

output_file: Text file ( optional, output )

Allows to save the QC table as a HTML file. If this parameter is filled, then the process will not open the Qt GUI and will run in batch mode.

PDF export is also possible, if the program wkhtmltopdf is installad on the system and available in the PATH.

Technical information

Toolbox : Freesurfer

User level : 0

Identifier : freesurfer_qc_table

File name : brainvisa/toolboxes/freesurfer/processes/freesurfer_qc_table.py

Supported file formats :

output_file :

HTML, HTML, PDF File