Morphologist from Freesurfer

Description

Note

• Type 'MorphologistFromFreesurfer.help()' for a full description of this process parameters.
• Type '<MorphologistFromFreesurfer>.get_input_spec()' for a full description of this process input trait types.
• Type '<MorphologistFromFreesurfer>.get_output_spec()' for a full description of this process output trait types.

Parameters

T1_orig: T1 FreesurferAnat ( input )

ribbon_image: Ribbon Freesurfer ( input )

scanner_based_referential: Scanner Based Referential ( optional, input )

Talairach_Auto: Talairach Auto Freesurfer ( input )

mni_referential: Referential ( input )

transform_chain_ACPC_to_Normalized: Transformation ( input )

acpc_referential: Referential ( input )

allow_multithreading: Boolean ( input )

imported_t1mri: Raw T1 MRI ( output )

commissure_coordinates: Commissure coordinates ( output )

talairach_transform: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( output )

t1mri_nobias: T1 MRI Bias Corrected ( output )

histo_analysis: Histo Analysis ( output )

BrainSegmentation_brain_mask: T1 Brain Mask ( output )

split_brain: Split Brain Mask ( output )

HeadMesh_head_mesh: Head Mesh ( output )

GreyWhiteClassification_grey_white: Left Grey White Mask ( output )

GreyWhiteClassification_1_grey_white: Right Grey White Mask ( output )

GreyWhiteTopology_hemi_cortex: Left CSF+GREY Mask ( output )

GreyWhiteTopology_1_hemi_cortex: Right CSF+GREY Mask ( output )

GreyWhiteMesh_white_mesh: Left Hemisphere White Mesh ( output )

GreyWhiteMesh_1_white_mesh: Right Hemisphere White Mesh ( output )

SulciSkeleton_skeleton: Left Cortex Skeleton ( output )

SulciSkeleton_1_skeleton: Right Cortex Skeleton ( output )

PialMesh_pial_mesh: Left Hemisphere Mesh ( output )

PialMesh_1_pial_mesh: Right Hemisphere Mesh ( output )

left_graph: Cortical folds graph ( output )

right_graph: Cortical folds graph ( output )

left_labelled_graph: Labelled Cortical folds graph ( output )

right_labelled_graph: Labelled Cortical folds graph ( output )

sulcal_morpho_measures: Sulcal morphometry measurements ( output )

t1mri_referential: Referential of Raw T1 MRI ( output )

MNI_transform: Transform Raw T1 MRI to Talairach-MNI template-SPM ( output )

HeadMesh_head_mask: Head Mask ( optional, output )

HeadMesh_remove_mask: Any Type ( optional, input )

HeadMesh_first_slice: Integer ( optional, input )

HeadMesh_threshold: Integer ( optional, input )

HeadMesh_closing: Number ( optional, input )

HeadMesh_threshold_mode: Choice ( input )

HeadMesh_keep_head_mask: Boolean ( input )

GreyWhiteTopology_version: Choice ( input )

fix_random_seed: Boolean ( input )

SulciSkeleton_version: Choice ( input )

PialMesh_version: Choice ( input )

GlobalMorphometry_left_csf: Left CSF Mask ( output )

GlobalMorphometry_right_csf: Right CSF Mask ( output )

GlobalMorphometry_brain_volumes_file: Brain volumetry measurements ( output )

Report_report: Morphologist report ( output )

Report_report_json: Morphologist JSON report ( optional, output )

Report_inter_subject_qc_table: QC table ( optional, output )

SulciSkeleton_roots: Left Cortex Catchment Bassins ( output )

SulciSkeleton_1_roots: Right Cortex Catchment Bassins ( output )

compute_fold_meshes: Boolean ( input )

CorticalFoldsGraph_graph_version: Choice ( input )

CorticalFoldsGraph_write_cortex_mid_interface: Boolean ( input )

CorticalFoldsGraph_sulci_voronoi: Sulci Voronoi ( output )

CorticalFoldsGraph_cortex_mid_interface: Grey White Mid-Interface Volume ( optional, output )

CorticalFoldsGraph_1_sulci_voronoi: Sulci Voronoi ( output )

CorticalFoldsGraph_1_cortex_mid_interface: Grey White Mid-Interface Volume ( optional, output )

select_Sulci_Recognition: Choice ( input )

SulciRecognition_recognition2000_model: Any Type ( optional, input )

sulci_recognition2000_model_hint: Choice ( optional, input )

sulci_recognition2000_rate: Number ( optional, input )

sulci_recognition2000_stop_rate: Number ( optional, input )

sulci_recognition2000_niter_below_stop_prop: Integer ( optional, input )

sulci_recognition2000_forbid_unknown_label: Boolean ( optional, input )

sulci_recognition_spam_local_or_markovian: Choice ( optional, input )

SPAM_recognition_labels_translation_map: Any Type ( optional, input )

SulciRecognition_SPAM_recognition09_global_recognition_labels_priors: Any Type ( optional, input )

SulcalRecognition_SPAM_recognition09_global_recognition_initial_transformation: Any Type ( optional, input )

sulci_recognition_spam_global_model_type: Choice ( optional, input )

SulciRecognition_SPAM_recognition09_global_recognition_model: Any Type ( optional, input )

SulciRecognition_SPAM_recognition09_local_recognition_model: Any Type ( optional, input )

SulciRecognition_SPAM_recognition09_local_recognition_local_referentials: Any Type ( optional, input )

SulciRecognition_SPAM_recognition09_local_recognition_direction_priors: Any Type ( optional, input )

SulciRecognition_SPAM_recognition09_local_recognition_angle_priors: Any Type ( optional, input )

SulciRecognition_SPAM_recognition09_local_recognition_translation_priors: Any Type ( optional, input )

SulciRecognition_SPAM_recognition09_markovian_recognition_model: Any Type ( optional, input )

SulciRecognition_SPAM_recognition09_markovian_recognition_segments_relations_model: Any Type ( optional, input )

SulciRecognition_CNN_recognition19_model_file: Any Type ( optional, input )

file (.mdsm) storing neural network parameters

SulciRecognition_CNN_recognition19_param_file: Any Type ( optional, input )

file (.json) storing the hyperparameters (cutting threshold)

SulciRecognition_CNN_recognition19_cuda: Integer ( optional, input )

device on which to run the training(-1 for cpu, i>=0 for the i-th gpu)

SulciRecognition_recognition2000_energy_plot_file: Any Type ( optional, output )

SulciRecognition_SPAM_recognition09_global_recognition_posterior_probabilities: Any Type ( optional, output )

SulciRecognition_SPAM_recognition09_global_recognition_output_transformation: Any Type ( optional, output )

SulciRecognition_SPAM_recognition09_global_recognition_output_t1_to_global_transformation: Any Type ( optional, output )

SulciRecognition_SPAM_recognition09_local_recognition_posterior_probabilities: Any Type ( optional, output )

SulciRecognition_SPAM_recognition09_local_recognition_output_local_transformations: Any Type ( optional, output )

SulciRecognition_SPAM_recognition09_markovian_recognition_posterior_probabilities: Any Type ( optional, output )

SulciRecognition_1_SPAM_recognition09_global_recognition_labels_priors: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_global_recognition_initial_transformation: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_global_recognition_model: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_local_recognition_model: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_local_recognition_local_referentials: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_local_recognition_direction_priors: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_local_recognition_angle_priors: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_local_recognition_translation_priors: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_markovian_recognition_model: Any Type ( optional, input )

SulciRecognition_1_SPAM_recognition09_markovian_recognition_segments_relations_model: Any Type ( optional, input )

SulciRecognition_1_recognition2000_model: Any Type ( optional, input )

SulciRecognition_1_CNN_recognition19_model_file: Any Type ( optional, input )

file (.mdsm) storing neural network parameters

SulciRecognition_1_CNN_recognition19_param_file: Any Type ( optional, input )

file (.json) storing the hyperparameters (cutting threshold)

SulciRecognition_1_recognition2000_energy_plot_file: Any Type ( optional, output )

SulciRecognition_1_SPAM_recognition09_global_recognition_posterior_probabilities: Any Type ( optional, output )

SulciRecognition_1_SPAM_recognition09_global_recognition_output_transformation: Any Type ( optional, output )

SulciRecognition_1_SPAM_recognition09_global_recognition_output_t1_to_global_transformation: Any Type ( optional, output )

SulciRecognition_1_SPAM_recognition09_local_recognition_posterior_probabilities: Any Type ( optional, output )

SulciRecognition_1_SPAM_recognition09_local_recognition_output_local_transformations: Any Type ( optional, output )

SulciRecognition_1_SPAM_recognition09_markovian_recognition_posterior_probabilities: Any Type ( optional, output )

GlobalMorphometry_subject: String ( input )

GlobalMorphometry_sulci_label_attribute: String ( input )

GlobalMorphometry_table_format: Choice ( input )

sulcal_morphometry_sulci_file: Any Type ( input )

Report_normative_brain_stats: Any Type ( optional, input )

Report_bids: String ( input )

Report_covariables_file: Participants file ( optional, input )

Report_covariables: String ( optional, input )

transform_to_scanner_based: Transformation to Scanner Based Referential ( optional, output )

use_capsul_completion: Boolean ( input )

edit_pipeline: Boolean ( input )

capsul_gui: Boolean ( input )

edit_study_config: Boolean ( input )

Technical information

Toolbox : Freesurfer

User level : 2

Identifier : morphologist_from_freesurfer

File name : brainvisa/toolboxes/freesurfer/processes/morphologist_from_freesurfer.py

Supported file formats :

T1_orig :

FreesurferMGZ, FreesurferMGH, FreesurferMGZ, NIFTI-1 image, gz compressed NIFTI-1 image

ribbon_image :

FreesurferMGZ, FreesurferMGH, FreesurferMGZ, NIFTI-1 image, gz compressed NIFTI-1 image

scanner_based_referential :

Referential, Referential

Talairach_Auto :

MINC transformation matrix, MINC transformation matrix

mni_referential :

Referential, Referential

transform_chain_ACPC_to_Normalized :

Transformation matrix, Transformation matrix

acpc_referential :

Referential, Referential

imported_t1mri :

gz compressed NIFTI-1 image, GIS image, NIFTI-1 image, gz compressed NIFTI-1 image

commissure_coordinates :

Commissure coordinates, Commissure coordinates

talairach_transform :

Transformation matrix, Transformation matrix

t1mri_nobias :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

histo_analysis :

Histo Analysis, Histo Analysis

BrainSegmentation_brain_mask :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

split_brain :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

HeadMesh_head_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

GreyWhiteClassification_grey_white :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

GreyWhiteClassification_1_grey_white :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

GreyWhiteTopology_hemi_cortex :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

GreyWhiteTopology_1_hemi_cortex :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

GreyWhiteMesh_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

GreyWhiteMesh_1_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

SulciSkeleton_skeleton :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

SulciSkeleton_1_skeleton :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

PialMesh_pial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

PialMesh_1_pial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

left_graph :

Graph and data, Graph and data

right_graph :

Graph and data, Graph and data

left_labelled_graph :

Graph and data, Graph and data

right_labelled_graph :

Graph and data, Graph and data

sulcal_morpho_measures :

CSV file, CSV file

t1mri_referential :

Referential, Referential

MNI_transform :

Transformation matrix, Transformation matrix

HeadMesh_head_mask :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

HeadMesh_remove_mask :

Directory, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, File, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

GlobalMorphometry_left_csf :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

GlobalMorphometry_right_csf :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

GlobalMorphometry_brain_volumes_file :

CSV file, CSV file

Report_report :

PDF File, PDF File

Report_report_json :

JSON file, JSON file

Report_inter_subject_qc_table :

TSV file, CSV file, TSV file

SulciSkeleton_roots :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

SulciSkeleton_1_roots :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

CorticalFoldsGraph_sulci_voronoi :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

CorticalFoldsGraph_cortex_mid_interface :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

CorticalFoldsGraph_1_sulci_voronoi :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

CorticalFoldsGraph_1_cortex_mid_interface :

gz compressed NIFTI-1 image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

SulciRecognition_recognition2000_model :

Graph, Graph, Graph and data

SPAM_recognition_labels_translation_map :

Label Translation, DEF Label Translation, Label Translation

SulciRecognition_SPAM_recognition09_global_recognition_labels_priors :

Text Data Table, Text Data Table

SulcalRecognition_SPAM_recognition09_global_recognition_initial_transformation :

Transformation matrix, Transformation matrix

SulciRecognition_SPAM_recognition09_global_recognition_model :

Text Data Table, Text Data Table

SulciRecognition_SPAM_recognition09_local_recognition_model :

Text Data Table, Text Data Table

SulciRecognition_SPAM_recognition09_local_recognition_local_referentials :

Text Data Table, Text Data Table

SulciRecognition_SPAM_recognition09_local_recognition_direction_priors :

Text Data Table, Text Data Table

SulciRecognition_SPAM_recognition09_local_recognition_angle_priors :

Text Data Table, Text Data Table

SulciRecognition_SPAM_recognition09_local_recognition_translation_priors :

Text Data Table, Text Data Table

SulciRecognition_SPAM_recognition09_markovian_recognition_model :

Text Data Table, Text Data Table

SulciRecognition_SPAM_recognition09_markovian_recognition_segments_relations_model :

Text Data Table, Text Data Table

SulciRecognition_CNN_recognition19_model_file :

Directory, ASCII results, AVI film, Aims bundles, Aims scalar features, Aperio svs, BMP image, BrainVISA session event, BrainVISA/Anatomist animation, Bucket, Bundle Selection Rules, Bval File, Bvec File, CSV file, Commissure coordinates, Config file, DEF Label Translation, DICOM image, Database Cache file, Directory, ECAT i image, ECAT v image, EPS file, FDF image, File, Filter file, FreesurferAvgCurv, FreesurferCurv, FreesurferCurvPial, FreesurferIsin, FreesurferLabel, FreesurferMGH, FreesurferMGZ, FreesurferParcellation, FreesurferPial, FreesurferSphereReg, FreesurferThickness, FreesurferWhite, GIF image, GIFTI file, GIS image, Graph, Graph and data, Gyri Model, HDF5 File, HTML, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, Hierarchy, Histo Analysis, Histogram, Info file, JPEG image, JSON file, Label Translation, Leica scn, Log file, MESH mesh, MINC image, MINC transformation matrix, MIRAX mrxs, MLP classifier, MNG image, MNI OBJ mesh, MP4 film, MPEG film, Matlab file, Matlab script, Minf, Moment Vector, Mrtrix tracts, NIFTI-1 image, Numpy Array, OGG film, PBM image, PDF File, PGM image, PLY mesh, PNG image, PPM image, PS file, Phase image, Plot results, Process execution event, Python Script, Quality Check Report, QuickTime film, Referential, SNNS pattern, SPM image, SQLite Database File, SVG file, SVM classifier, Sakura svslide, Selection, Series of Aperio svs, Series of BMP image, Series of DICOM image, Series of Directory, Series of ECAT i image, Series of ECAT v image, Series of FDF image, Series of FreesurferLabel, Series of FreesurferMGH, Series of FreesurferMGZ, Series of GIF image, Series of GIS image, Series of Hamamatsu ndpi, Series of Hamamatsu vms, Series of Hamamatsu vmu, Series of JPEG image, Series of Leica scn, Series of MINC image, Series of MNG image, Series of NIFTI-1 image, Series of PBM image, Series of PGM image, Series of PNG image, Series of PPM image, Series of SPM image, Series of Sakura svslide, Series of TIFF image, Series of TIFF(.tif) image, Series of Ventana bif, Series of XBM image, Series of XPM image, Series of Zeiss czi, Series of gz compressed MINC image, Series of gz compressed NIFTI-1 image, Sigraph Learner, Soma-Workflow workflow, Sparse Matrix, TIFF image, TIFF(.tif) image, TRI mesh, TSV file, Template model, Template model domain, Text Data Table, Text file, Texture, Trackvis tracts, Transformation matrix, Tree, VIDA image, Ventana bif, XBM image, XLS file, XLSX file, XML, XPM image, YAML file, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIFTI file, Z compressed GIS image, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed SPM image, Z compressed TRI mesh, Z compressed Texture, Z compressed VIDA image, ZIP file, Zeiss czi, bz2 Matlab file, gz Matlab file, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIFTI file, gz compressed GIS image, gz compressed MESH mesh, gz compressed MINC image, gz compressed MNI OBJ mesh, gz compressed NIFTI-1 image, gz compressed PLY mesh, gz compressed PS file, gz compressed SPM image, gz compressed TAR archive, gz compressed TRI mesh, gz compressed Texture, gz compressed VIDA image, gzipped XML, mdsm file, pickle file, siRelax Fold Energy

SulciRecognition_CNN_recognition19_param_file :

Directory, ASCII results, AVI film, Aims bundles, Aims scalar features, Aperio svs, BMP image, BrainVISA session event, BrainVISA/Anatomist animation, Bucket, Bundle Selection Rules, Bval File, Bvec File, CSV file, Commissure coordinates, Config file, DEF Label Translation, DICOM image, Database Cache file, Directory, ECAT i image, ECAT v image, EPS file, FDF image, File, Filter file, FreesurferAvgCurv, FreesurferCurv, FreesurferCurvPial, FreesurferIsin, FreesurferLabel, FreesurferMGH, FreesurferMGZ, FreesurferParcellation, FreesurferPial, FreesurferSphereReg, FreesurferThickness, FreesurferWhite, GIF image, GIFTI file, GIS image, Graph, Graph and data, Gyri Model, HDF5 File, HTML, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, Hierarchy, Histo Analysis, Histogram, Info file, JPEG image, JSON file, Label Translation, Leica scn, Log file, MESH mesh, MINC image, MINC transformation matrix, MIRAX mrxs, MLP classifier, MNG image, MNI OBJ mesh, MP4 film, MPEG film, Matlab file, Matlab script, Minf, Moment Vector, Mrtrix tracts, NIFTI-1 image, Numpy Array, OGG film, PBM image, PDF File, PGM image, PLY mesh, PNG image, PPM image, PS file, Phase image, Plot results, Process execution event, Python Script, Quality Check Report, QuickTime film, Referential, SNNS pattern, SPM image, SQLite Database File, SVG file, SVM classifier, Sakura svslide, Selection, Series of Aperio svs, Series of BMP image, Series of DICOM image, Series of Directory, Series of ECAT i image, Series of ECAT v image, Series of FDF image, Series of FreesurferLabel, Series of FreesurferMGH, Series of FreesurferMGZ, Series of GIF image, Series of GIS image, Series of Hamamatsu ndpi, Series of Hamamatsu vms, Series of Hamamatsu vmu, Series of JPEG image, Series of Leica scn, Series of MINC image, Series of MNG image, Series of NIFTI-1 image, Series of PBM image, Series of PGM image, Series of PNG image, Series of PPM image, Series of SPM image, Series of Sakura svslide, Series of TIFF image, Series of TIFF(.tif) image, Series of Ventana bif, Series of XBM image, Series of XPM image, Series of Zeiss czi, Series of gz compressed MINC image, Series of gz compressed NIFTI-1 image, Sigraph Learner, Soma-Workflow workflow, Sparse Matrix, TIFF image, TIFF(.tif) image, TRI mesh, TSV file, Template model, Template model domain, Text Data Table, Text file, Texture, Trackvis tracts, Transformation matrix, Tree, VIDA image, Ventana bif, XBM image, XLS file, XLSX file, XML, XPM image, YAML file, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIFTI file, Z compressed GIS image, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed SPM image, Z compressed TRI mesh, Z compressed Texture, Z compressed VIDA image, ZIP file, Zeiss czi, bz2 Matlab file, gz Matlab file, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIFTI file, gz compressed GIS image, gz compressed MESH mesh, gz compressed MINC image, gz compressed MNI OBJ mesh, gz compressed NIFTI-1 image, gz compressed PLY mesh, gz compressed PS file, gz compressed SPM image, gz compressed TAR archive, gz compressed TRI mesh, gz compressed Texture, gz compressed VIDA image, gzipped XML, mdsm file, pickle file, siRelax Fold Energy

SulciRecognition_recognition2000_energy_plot_file :

siRelax Fold Energy, siRelax Fold Energy

SulciRecognition_SPAM_recognition09_global_recognition_posterior_probabilities :

CSV file, CSV file

SulciRecognition_SPAM_recognition09_global_recognition_output_transformation :

Transformation matrix, Transformation matrix

SulciRecognition_SPAM_recognition09_global_recognition_output_t1_to_global_transformation :

Transformation matrix, Transformation matrix

SulciRecognition_SPAM_recognition09_local_recognition_posterior_probabilities :

CSV file, CSV file

SulciRecognition_SPAM_recognition09_local_recognition_output_local_transformations :

Directory, Directory, File

SulciRecognition_SPAM_recognition09_markovian_recognition_posterior_probabilities :

CSV file, CSV file

SulciRecognition_1_SPAM_recognition09_global_recognition_labels_priors :

Text Data Table, Text Data Table

SulciRecognition_1_SPAM_recognition09_global_recognition_initial_transformation :

Transformation matrix, Transformation matrix

SulciRecognition_1_SPAM_recognition09_global_recognition_model :

Text Data Table, Text Data Table

SulciRecognition_1_SPAM_recognition09_local_recognition_model :

Text Data Table, Text Data Table

SulciRecognition_1_SPAM_recognition09_local_recognition_local_referentials :

Text Data Table, Text Data Table

SulciRecognition_1_SPAM_recognition09_local_recognition_direction_priors :

Text Data Table, Text Data Table

SulciRecognition_1_SPAM_recognition09_local_recognition_angle_priors :

Text Data Table, Text Data Table

SulciRecognition_1_SPAM_recognition09_local_recognition_translation_priors :

Text Data Table, Text Data Table

SulciRecognition_1_SPAM_recognition09_markovian_recognition_model :

Text Data Table, Text Data Table

SulciRecognition_1_SPAM_recognition09_markovian_recognition_segments_relations_model :

Text Data Table, Text Data Table

SulciRecognition_1_recognition2000_model :

Graph, Graph, Graph and data

SulciRecognition_1_CNN_recognition19_model_file :

Directory, ASCII results, AVI film, Aims bundles, Aims scalar features, Aperio svs, BMP image, BrainVISA session event, BrainVISA/Anatomist animation, Bucket, Bundle Selection Rules, Bval File, Bvec File, CSV file, Commissure coordinates, Config file, DEF Label Translation, DICOM image, Database Cache file, Directory, ECAT i image, ECAT v image, EPS file, FDF image, File, Filter file, FreesurferAvgCurv, FreesurferCurv, FreesurferCurvPial, FreesurferIsin, FreesurferLabel, FreesurferMGH, FreesurferMGZ, FreesurferParcellation, FreesurferPial, FreesurferSphereReg, FreesurferThickness, FreesurferWhite, GIF image, GIFTI file, GIS image, Graph, Graph and data, Gyri Model, HDF5 File, HTML, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, Hierarchy, Histo Analysis, Histogram, Info file, JPEG image, JSON file, Label Translation, Leica scn, Log file, MESH mesh, MINC image, MINC transformation matrix, MIRAX mrxs, MLP classifier, MNG image, MNI OBJ mesh, MP4 film, MPEG film, Matlab file, Matlab script, Minf, Moment Vector, Mrtrix tracts, NIFTI-1 image, Numpy Array, OGG film, PBM image, PDF File, PGM image, PLY mesh, PNG image, PPM image, PS file, Phase image, Plot results, Process execution event, Python Script, Quality Check Report, QuickTime film, Referential, SNNS pattern, SPM image, SQLite Database File, SVG file, SVM classifier, Sakura svslide, Selection, Series of Aperio svs, Series of BMP image, Series of DICOM image, Series of Directory, Series of ECAT i image, Series of ECAT v image, Series of FDF image, Series of FreesurferLabel, Series of FreesurferMGH, Series of FreesurferMGZ, Series of GIF image, Series of GIS image, Series of Hamamatsu ndpi, Series of Hamamatsu vms, Series of Hamamatsu vmu, Series of JPEG image, Series of Leica scn, Series of MINC image, Series of MNG image, Series of NIFTI-1 image, Series of PBM image, Series of PGM image, Series of PNG image, Series of PPM image, Series of SPM image, Series of Sakura svslide, Series of TIFF image, Series of TIFF(.tif) image, Series of Ventana bif, Series of XBM image, Series of XPM image, Series of Zeiss czi, Series of gz compressed MINC image, Series of gz compressed NIFTI-1 image, Sigraph Learner, Soma-Workflow workflow, Sparse Matrix, TIFF image, TIFF(.tif) image, TRI mesh, TSV file, Template model, Template model domain, Text Data Table, Text file, Texture, Trackvis tracts, Transformation matrix, Tree, VIDA image, Ventana bif, XBM image, XLS file, XLSX file, XML, XPM image, YAML file, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIFTI file, Z compressed GIS image, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed SPM image, Z compressed TRI mesh, Z compressed Texture, Z compressed VIDA image, ZIP file, Zeiss czi, bz2 Matlab file, gz Matlab file, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIFTI file, gz compressed GIS image, gz compressed MESH mesh, gz compressed MINC image, gz compressed MNI OBJ mesh, gz compressed NIFTI-1 image, gz compressed PLY mesh, gz compressed PS file, gz compressed SPM image, gz compressed TAR archive, gz compressed TRI mesh, gz compressed Texture, gz compressed VIDA image, gzipped XML, mdsm file, pickle file, siRelax Fold Energy

SulciRecognition_1_CNN_recognition19_param_file :

Directory, ASCII results, AVI film, Aims bundles, Aims scalar features, Aperio svs, BMP image, BrainVISA session event, BrainVISA/Anatomist animation, Bucket, Bundle Selection Rules, Bval File, Bvec File, CSV file, Commissure coordinates, Config file, DEF Label Translation, DICOM image, Database Cache file, Directory, ECAT i image, ECAT v image, EPS file, FDF image, File, Filter file, FreesurferAvgCurv, FreesurferCurv, FreesurferCurvPial, FreesurferIsin, FreesurferLabel, FreesurferMGH, FreesurferMGZ, FreesurferParcellation, FreesurferPial, FreesurferSphereReg, FreesurferThickness, FreesurferWhite, GIF image, GIFTI file, GIS image, Graph, Graph and data, Gyri Model, HDF5 File, HTML, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, Hierarchy, Histo Analysis, Histogram, Info file, JPEG image, JSON file, Label Translation, Leica scn, Log file, MESH mesh, MINC image, MINC transformation matrix, MIRAX mrxs, MLP classifier, MNG image, MNI OBJ mesh, MP4 film, MPEG film, Matlab file, Matlab script, Minf, Moment Vector, Mrtrix tracts, NIFTI-1 image, Numpy Array, OGG film, PBM image, PDF File, PGM image, PLY mesh, PNG image, PPM image, PS file, Phase image, Plot results, Process execution event, Python Script, Quality Check Report, QuickTime film, Referential, SNNS pattern, SPM image, SQLite Database File, SVG file, SVM classifier, Sakura svslide, Selection, Series of Aperio svs, Series of BMP image, Series of DICOM image, Series of Directory, Series of ECAT i image, Series of ECAT v image, Series of FDF image, Series of FreesurferLabel, Series of FreesurferMGH, Series of FreesurferMGZ, Series of GIF image, Series of GIS image, Series of Hamamatsu ndpi, Series of Hamamatsu vms, Series of Hamamatsu vmu, Series of JPEG image, Series of Leica scn, Series of MINC image, Series of MNG image, Series of NIFTI-1 image, Series of PBM image, Series of PGM image, Series of PNG image, Series of PPM image, Series of SPM image, Series of Sakura svslide, Series of TIFF image, Series of TIFF(.tif) image, Series of Ventana bif, Series of XBM image, Series of XPM image, Series of Zeiss czi, Series of gz compressed MINC image, Series of gz compressed NIFTI-1 image, Sigraph Learner, Soma-Workflow workflow, Sparse Matrix, TIFF image, TIFF(.tif) image, TRI mesh, TSV file, Template model, Template model domain, Text Data Table, Text file, Texture, Trackvis tracts, Transformation matrix, Tree, VIDA image, Ventana bif, XBM image, XLS file, XLSX file, XML, XPM image, YAML file, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIFTI file, Z compressed GIS image, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed SPM image, Z compressed TRI mesh, Z compressed Texture, Z compressed VIDA image, ZIP file, Zeiss czi, bz2 Matlab file, gz Matlab file, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIFTI file, gz compressed GIS image, gz compressed MESH mesh, gz compressed MINC image, gz compressed MNI OBJ mesh, gz compressed NIFTI-1 image, gz compressed PLY mesh, gz compressed PS file, gz compressed SPM image, gz compressed TAR archive, gz compressed TRI mesh, gz compressed Texture, gz compressed VIDA image, gzipped XML, mdsm file, pickle file, siRelax Fold Energy

SulciRecognition_1_recognition2000_energy_plot_file :

siRelax Fold Energy, siRelax Fold Energy

SulciRecognition_1_SPAM_recognition09_global_recognition_posterior_probabilities :

CSV file, CSV file

SulciRecognition_1_SPAM_recognition09_global_recognition_output_transformation :

Transformation matrix, Transformation matrix

SulciRecognition_1_SPAM_recognition09_global_recognition_output_t1_to_global_transformation :

Transformation matrix, Transformation matrix

SulciRecognition_1_SPAM_recognition09_local_recognition_posterior_probabilities :

CSV file, CSV file

SulciRecognition_1_SPAM_recognition09_local_recognition_output_local_transformations :

Directory, Directory, File

SulciRecognition_1_SPAM_recognition09_markovian_recognition_posterior_probabilities :

CSV file, CSV file

sulcal_morphometry_sulci_file :

JSON file, JSON file

Report_normative_brain_stats :

JSON file, JSON file

Report_covariables_file :

CSV file, CSV file, TSV file

transform_to_scanner_based :

Transformation matrix, Transformation matrix