Brain Normalisation and Masking

None

Parameters

Lgrey_white: ListOf( Grey White Mask Corrected DISCO DARTEL ) ( input )

Rgrey_white: ListOf( Grey White Mask Corrected DISCO DARTEL ) ( input )

nobias: ListOf( T1 MRI Bias Corrected DISCO DARTEL ) ( input )

Keep_existing_mask: Boolean ( input )

brain_mask: Brain Mask DISCO DARTEL ( output )

brain_masked_norm: ListOf( T1 MRI Bias Corrected Normalized Masked DISCO DARTEL ) ( output )

Technical information

Toolbox : Disco

User level : 2

Identifier : normalisation

File name : brainvisa/toolboxes/disco/processes/Evaluation/normalisation.py

Supported file formats :

Lgrey_white :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Rgrey_white :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

nobias :

NIFTI-1 image, NIFTI-1 image

brain_mask :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

brain_masked_norm :

NIFTI-1 image, NIFTI-1 image