spm8 - VBM Segmentation

None

Paramètres

t1mri: Raw T1 MRI ( entrée )

TPM_template: TPM template ( entrée )

gaussian_classes: ListOf( Entier ) ( input )

bias_regulatisation: Choice ( input )

bias_FWHM: Choice ( input )

affine_regularisation: Choice ( input )

warping_regularisation: Entier ( input )

sampling_distance: Réel ( input )

spatial_norm: Choice ( input )

DARTEL_template: TPM HDW DARTEL template ( entrée )

sanlm: Choice ( input )

mrf: Réel ( input )

clean_up: Choice ( input )

print_results: Booléen ( input )

save_grey_native: Booléen ( input )

grey_native: T1 MRI tissue probability map ( optional, sortie )

save_grey_normalized: Booléen ( input )

grey_LDW_warped_unmodulated: T1 MRI tissue probability map ( optional, sortie )

grey_HDW_warped_unmodulated: T1 MRI tissue probability map ( optional, sortie )

save_grey_modulated: Choice ( input )

grey_LDW_warped_modulated: T1 MRI tissue probability map ( optional, sortie )

grey_HDW_warped_modulated: T1 MRI tissue probability map ( sortie )

save_grey_dartel_imported: Choice ( input )

grey_dartel_imported: T1 MRI tissue probability map ( optional, sortie )

save_white_native: Booléen ( input )

white_native: T1 MRI tissue probability map ( optional, sortie )

save_white_normalized: Booléen ( input )

white_LDW_warped_unmodulated: T1 MRI tissue probability map ( optional, sortie )

white_HDW_warped_unmodulated: T1 MRI tissue probability map ( optional, sortie )

save_white_modulated: Choice ( input )

white_LDW_warped_modulated: T1 MRI tissue probability map ( optional, sortie )

white_HDW_warped_modulated: T1 MRI tissue probability map ( sortie )

save_white_dartel_imported: Choice ( input )

white_dartel_imported: T1 MRI tissue probability map ( optional, sortie )

save_csf_native: Booléen ( input )

csf_native: T1 MRI tissue probability map ( optional, sortie )

save_csf_normalized: Booléen ( input )

csf_LDW_warped_unmodulated: T1 MRI tissue probability map ( optional, sortie )

csf_HDW_warped_unmodulated: T1 MRI tissue probability map ( optional, sortie )

save_csf_modulated: Choice ( input )

csf_LDW_warped_modulated: T1 MRI tissue probability map ( optional, sortie )

csf_HDW_warped_modulated: T1 MRI tissue probability map ( optional, sortie )

save_csf_dartel_imported: Choice ( input )

csf_dartel_imported: T1 MRI tissue probability map ( optional, sortie )

save_bias_native: Booléen ( input )

t1mri_bias_corrected: IRM T1 Biais Corrigé ( optional, sortie )

save_bias_normalized: Booléen ( input )

bias_LDW_warped_unmodulated: IRM T1 Biais Corrigé ( optional, sortie )

bias_HDW_warped_unmodulated: IRM T1 Biais Corrigé ( sortie )

save_bias_affine: Booléen ( input )

bias_affine: IRM T1 Biais Corrigé ( optional, sortie )

save_pve_native: Booléen ( input )

pve_native: T1 MRI partial volume estimation ( optional, sortie )

save_pve_normalized: Booléen ( input )

pve_LDW_warped_unmodulated: T1 MRI partial volume estimation ( optional, sortie )

pve_HDW_warped_unmodulated: T1 MRI partial volume estimation ( optional, sortie )

save_pve_dartel_imported: Choice ( input )

pve_dartel_imported: T1 MRI partial volume estimation ( optional, sortie )

save_jacobian_normalized: Booléen ( input )

jacobian_normalized: Jacobian determinant ( optional, sortie )

save_deformation_fields: Choice ( input )

forward_LDW_field: SPM deformation field ( optional, sortie )

forward_HDW_field: SPM deformation field ( optional, sortie )

inverse_LDW_field: SPM deformation field ( optional, sortie )

inverse_HDW_field: SPM deformation field ( optional, sortie )

DF_transformation_matrix: Matlab SPM file ( optional, sortie )

GM_WM_CSF_volumes_txt: Estimate T1 MRI raw volumes ( optional, sortie )

batch_location: Matlab SPM script ( sortie )

Informations techniques

Toolbox : SPM

Niveau d'utilisateur : 0

Identifiant : SPM8VBMSegmentation

Nom de fichier : brainvisa/toolboxes/spm/processes/spm8/tools/VBM8/SPM8VBMSegmentation.py

Supported file formats :

t1mri :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

TPM_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

DARTEL_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

grey_native :

NIFTI-1 image, NIFTI-1 image

grey_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

grey_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

grey_LDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

grey_HDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

grey_dartel_imported :

NIFTI-1 image, NIFTI-1 image

white_native :

NIFTI-1 image, NIFTI-1 image

white_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

white_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

white_LDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

white_HDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

white_dartel_imported :

NIFTI-1 image, NIFTI-1 image

csf_native :

NIFTI-1 image, NIFTI-1 image

csf_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

csf_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

csf_LDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

csf_HDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

csf_dartel_imported :

NIFTI-1 image, NIFTI-1 image

t1mri_bias_corrected :

NIFTI-1 image, NIFTI-1 image

bias_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

bias_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

bias_affine :

NIFTI-1 image, NIFTI-1 image

pve_native :

NIFTI-1 image, NIFTI-1 image

pve_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

pve_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

pve_dartel_imported :

NIFTI-1 image, NIFTI-1 image

jacobian_normalized :

NIFTI-1 image, NIFTI-1 image

forward_LDW_field :

NIFTI-1 image, NIFTI-1 image

forward_HDW_field :

NIFTI-1 image, NIFTI-1 image

inverse_LDW_field :

NIFTI-1 image, NIFTI-1 image

inverse_HDW_field :

NIFTI-1 image, NIFTI-1 image

DF_transformation_matrix :

Matlab file, Matlab file

GM_WM_CSF_volumes_txt :

Text file, Text file

batch_location :

Matlab script, Matlab script