Multi Subject Sulci Snapshot Board

Creation of a multi-subject page (or pages) displaying sulci graphs in the same given orientation

Description

For each subject, an Anatomist 3D view is created showing its cortical sulci and optionally its grew/white mesh, and snapshot is saved from it.

Then a multi-subject layout is performed to show all subjects side to side in the same orentation. It may be displayed in a single page, or on multiple pages according to the specified layout (rows x colomns on each page).

This process calls several commands and needs some python modules installed: PIL (Python Imaging Library), ImageMagick's convert tool, Aims/PyAims, and of course Anatomist.

Paramètres

graphs: ListOf( Graphe de sillons corticaux ) ( optional, input )

meshes: ListOf( Maillage de la matière blanche d'un hémisphère ) ( optional, input )

transformations: ListOf( Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ) ( optional, input )

If transformations are not specified, they will be taken from the Talairach information inside the cortical graphs.

nomenclature: Nomenclature ( entrée )

labels_translation_map: Label translation ( entrée )

sulci_name: String ( optional, input )

orientation: Choice ( input )

label_attribute: Choice ( input )

output_image: 2D Image ( sortie )

pages_number: Entier ( optional, input )

rows: Entier ( optional, input )

columns: Entier ( optional, input )

page_size_ratio: Réel ( input )

snapshot_width: Entier ( input )

snapshot_height: Entier ( input )

Informations techniques

Toolbox : Morphologist

Niveau d'utilisateur : 0

Identifiant : multiSubjectSulciSnapshotBoard

Nom de fichier : brainvisa/toolboxes/morphologist/processes/viewers/Snapshots/multiSubjectSulciSnapshotBoard.py

Supported file formats :

graphs :

Graph and data, Graph and data

meshes :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

transformations :

Transformation matrix, Transformation matrix

nomenclature :

Hiérarchie, Hiérarchie

labels_translation_map :

Label Translation, DEF Label Translation, Label Translation

output_image :

JPEG image, BMP image, GIF image, JPEG image, MNG image, PBM image, PGM image, PNG image, PPM image, TIFF image, TIFF(.tif) image, XBM image, XPM image