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brainrat-private 6.0.4
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This is the complete list of members for HistologyScanSlicesDetector, including all inherited members.
| analyze(carto::VolumeRef< int16_t > &vol, const int32_t slices_number=6, const int32_t scan_resolution=0, const int32_t threshold_lowerbound=0, const int32_t threshold_upperbound=0) | HistologyScanSlicesDetector | |
| boundingBoxes(const carto::VolumeRef< int16_t > &vol, const std::vector< Component > &components) | HistologyScanSlicesDetector | |
| checkComponents(carto::VolumeRef< int16_t > &vol, std::vector< Component > &components, const int32_t slices_number) | HistologyScanSlicesDetector | protected |
| detectComponents(carto::VolumeRef< int16_t > &vol, const int32_t slices_number, const int32_t threshold_lowerbound, const int32_t threshold_upperbound) | HistologyScanSlicesDetector | protected |
| detectHistogramModes(const carto::VolumeRef< int32_t > &histogram, const int32_t slices_number, const int32_t slices_min_voxels, const HistoAnalysisFunction analysis_function, int32_t &background, int32_t &slices_mode_lowerbound, int32_t &slices_mode_upperbound) | HistologyScanSlicesDetector | protected |
| HistologyScanSlicesDetector(float slice_min_surface=1., float slice_median_variation=1./FRACTION, int32_t histogram_modes=NB_MODES, int32_t histogram_bins=MAX_HISTO, bool check_slices=true) | HistologyScanSlicesDetector | |
| openComponent(const std::vector< Component > &components, const int32_t component, carto::VolumeRef< int16_t > &vol) | HistologyScanSlicesDetector | protected |
| processOutlierComponents(std::vector< Component > &components, carto::VolumeRef< int16_t > &vol, const int32_t slices_number) | HistologyScanSlicesDetector | protected |
| separateComponent(const std::vector< Component > &components, const int32_t component, carto::VolumeRef< int16_t > &vol, const Direction dir) | HistologyScanSlicesDetector | protected |
| writeTestsWarnings(const Tests &t) | HistologyScanSlicesDetector | protected |