utility.h

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 /* Copyright (C) 2000-2013 CEA
 *
 * This software and supporting documentation were developed by
 *     bioPICSEL
 *     CEA/DSV/I²BM/MIRCen/LMN, Batiment 61,
 *     18, route du Panorama
 *     92265 Fontenay-aux-Roses
 *     France
 */
 
#ifndef BRAINRAT_UTILITY_UTILITY_H
#define BRAINRAT_UTILITY_UTILITY_H
 
//--- brainrat ---------------------------------------------------------------
#include <brainrat/data/classes.h>
#include <brainrat/io/python_helpers.h>
//--- aims -------------------------------------------------------------------
#include <aims/data/data_g.h>
#include <aims/utility/channel.h>
//--- cartobase --------------------------------------------------------------
#include <cartobase/smart/rcptr.h>
//----------------------------------------------------------------------------
 
//============================================================================
//   F O R W A R D   D E C L A R A T I O N S
//============================================================================
 
namespace obso_temp {
 
//============================================================================
//   U T I L I T I E S
//============================================================================
 
  template< typename T1, typename T2>
  inline bool pair_key_comparer( const std::pair<T1, T2>& p1,
                                 const std::pair<T1, T2>& p2 )
  {
    return p1.first < p2.first;
  }
 
  // Get Dpy learning database syntax
  carto::SyntaxSet & getDpySyntax();
 
  // Get Dpy learning database reader helpers
  soma::PythonReader::HelperSet & getDpyReaderHelpers();
 
  // Get brain mask from RGB image
  template <typename T>
  AimsData<int16_t> getBrainMask( const AimsData<T> &image,
                                  byte channel = GreenChannel);
 
//============================================================================
//   C O M P A R E R
//============================================================================
 
  template<class T>
  class ImageComparer
  {
    public:
 
      ImageComparer();
 
      virtual ~ImageComparer() {}
 
      virtual AimsData<double> compare( const std::list<std::string> &imageFiles,
                                        const std::list<std::string> &graphFiles,
                                        const std::vector<uint32_t> &labels,
                                        const std::vector<std::string> &rois );
  };
 
} // namespace obso_temp
 
#endif