Started Running as brainvisa ---------------------------------------- $ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=brainvisa-sf-6.0 -- configure ---------------------------------------- Obtaining file:///home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/populse-db Installing build dependencies: started Installing build dependencies: finished with status 'done' Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Getting requirements to build editable: started Getting requirements to build editable: finished with status 'done' Preparing editable metadata (pyproject.toml): started Preparing editable metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: populse-db Building editable for populse-db (pyproject.toml): started Building editable for populse-db (pyproject.toml): finished with status 'done' Created wheel for populse-db: filename=populse_db-3.0.10-0.editable-py3-none-any.whl size=10540 sha256=9076ba801ef5c87c54fdec84fcdd8ba1ceb6e46748e74f55ed659f3219d2f3f3 Stored in directory: /home_local/a-sac-ns-brainvisa/tmp/pip-ephem-wheel-cache-7n7xlehy/wheels/2f/c5/c9/cd61bf49bb117c70772fef2c5fc2b02b234bcd0f496b13f8cc Successfully built populse-db Installing collected packages: populse-db Successfully installed populse-db-3.0.10 $ cmake -DPIXI=/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0 -DCMAKE_BUILD_TYPE:STRING=Release /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build Using Pixi environment located in /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0 -- Use specific CMake code for Linux -- Configuring component brainvisa-cmake from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake" -- Configuring component brainvisa-share from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-share" -- Found PythonInterp: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11 (Required is at least version "2") -- Configuring component soma-base from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-base" CMake Deprecation Warning at /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-base/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring component soma-io from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-io" -- Checking for one of the modules 'openslide' -- Configuring component soma-workflow from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-workflow" -- LibDRMAA was not found. -- Configuring component capsul from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/build_files/capsul_src" -- Configuring component populse-db from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/build_files/populse-db_src" -- Configuring component aims-free from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free" -- Checking for one of the modules 'openslide' -- Found PythonInterp: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11 CMake Deprecation Warning at /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free/aimsgui/src/CiftiLib-1.5.1/CMakeLists.txt:7 (CMAKE_POLICY): The OLD behavior for policy CMP0045 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. RUN MAKETEMPLATES: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/aims-5.2/sip/maketemplates.py;-i;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free/pyaims/src/sip/generatedtypes.py;-p;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free/pyaims/src/sip;-o;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/aims-5.2/sip;-t;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free/pyaims/src/sip/typessub.py;-l;-m;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/moc;-P;cpp -C;-D;SIP_MODULE="PyQt5.sip";-D;SIP_ABI_MAJOR_VERSION=12 -- Configuring component aims-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-gpl" -- Checking for one of the modules 'openslide' CMake Warning (dev) at /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-gpl/pyaimsgui/src/sip_gui/CMakeLists.txt:27 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring component anatomist-free from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-free" -- Checking for one of the modules 'openslide' VTK5 and Qt5+ are not supported. The VTK plugin is disabled. WARNING: anatomist modules anavtk will not be build because VTK or vtkINRIA3D library has not been found -- Configuring component anatomist-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl" -- Checking for one of the modules 'openslide' -- Checking for one of the modules 'openslide' CMake Warning (dev) at /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/src/sip/CMakeLists.txt:24 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring component axon from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/axon" -- Checking for one of the modules 'openslide' SIP VERSION: 6.7.12 -- Configuring component brainvisa-spm from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-spm" -- Configuring component highres-cortex from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/highres-cortex" -- Checking for one of the modules 'openslide' -- Found OpenMP: TRUE (found version "4.5") -- Configuring component morphologist-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-nonfree" -- Checking for one of the modules 'openslide' -- Checking for one of the modules 'openslide' -- Configuring component morphologist-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl" -- Checking for one of the modules 'openslide' -- Configuring component morphologist-baby from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-baby" -- Checking for one of the modules 'openslide' -- Checking for one of the modules 'openslide' -- Configuring component sulci-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/sulci-nonfree" -- Checking for one of the modules 'openslide' -- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR) -- Checking for one of the modules 'openslide' -- Configuring component morphologist-ui from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-ui" -- Checking for one of the modules 'openslide' -- Checking for one of the modules 'openslide' -- Configuring component morpho-deepsulci from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci" -- Checking for one of the modules 'openslide' -- Checking for one of the modules 'openslide' -- Configuring component brainrat-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainrat-gpl" -- Checking for one of the modules 'openslide' -- Configuring component brainrat-private from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainrat-private" -- Checking for one of the modules 'openslide' -- Configuring component bioprocessing from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/bioprocessing" -- Found OpenMP: TRUE (found version "4.5") -- Checking for one of the modules 'openslide' -- Configuring component primatologist-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/primatologist-gpl" -- Checking for one of the modules 'openslide' -- Configuring component constellation-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/constellation-gpl" -- Configuring component constellation-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/constellation-nonfree" -- Checking for one of the modules 'openslide' -- Checking for one of the modules 'openslide' -- Configuring component cortical_surface-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/cortical_surface-nonfree" -- Checking for one of the modules 'openslide' -- Configuring component cortical_surface-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/cortical_surface-gpl" -- Configuring component brainvisa_freesurfer from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa_freesurfer" -- Configuring component nuclear_imaging-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/nuclear_imaging-gpl" -- Configuring component nuclear_imaging-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/nuclear_imaging-nonfree" -- Checking for one of the modules 'openslide' -- Configuring component disco from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/disco" -- Checking for one of the modules 'openslide' -- Checking for one of the modules 'openslide' -- Checking for one of the modules 'openslide' -- Configuring done (13.1s) -- Generating done (2.9s) -- Build files have been written to: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build bv_maker summary: OK step configure: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build, started: 2025/08/30 03:47, stopped: 2025/08/30 03:47 All went good. Finished: SUCCESS