/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,739::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,740::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,741::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,741::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,743::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,743::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,744::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,745::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,746::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,747::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,748::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,750::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,750::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,751::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,752::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,758::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,759::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,760::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,760::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,761::INFO::process: '40' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,761::INFO::Writing module 'capsul' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:53,761::INFO::Index: an index has been written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul.
generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist', '--schema']
chargement des traductions [en]... fait
generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist', '--schema']
chargement des traductions [en]... fait
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... fait
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,462::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,462::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,462::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,462::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,463::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,463::INFO::Found '4' process(es) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,463::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'...
chargement de l'inventaire intersphinx 'somabase' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv ...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,464::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyana' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyanatomist-5.2/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyanatomist-5.2/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyanatomist-5.2/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'somaworkflow' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,465::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,465::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,466::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,466::INFO::process: '4' files written for module 'pattern_classification' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,466::INFO::Writing module 'pattern_classification' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-09-19 03:51:54,466::INFO::Index: an index has been written for module 'pattern_classification' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification.
[autosummary] engendrement d’un auto-sommaire pour : index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst
construction en cours [mo] : cibles périmées pour les fichiers po 0
écriture...
construction [html] : cibles périmées pour les fichiers sources 57
mise à jour de l'environnement : 0 ajouté(s), 57 modifié(s), 0 supprimé(s)
lecture des sources... [ 2%] process_docs/morphologist/capsul/index
lecture des sources... [ 4%] process_docs/morphologist/capsul/pipeline/index
lecture des sources... [ 5%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... lecture des sources... [ 7%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline
fait
lecture des sources... [ 9%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation
chargement de l'inventaire intersphinx 'somabase' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyana' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyanatomist-5.2/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyanatomist-5.2/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyanatomist-5.2/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'somaworkflow' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv ...
chargement de l'inventaire intersphinx 'morphouiusr' de doc/morphologist-ui-5.2/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv'
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[autosummary] engendrement d’un auto-sommaire pour : index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, sulpated.rst
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:70: WARNING: libellé dupliqué morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:70: WARNING: libellé dupliqué morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:30: WARNING: libellé dupliqué morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:66: WARNING: libellé dupliqué morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/index.rst:129: WARNING: La citation [TUCHOLKA2008] n'est pas référencée [ref.citation]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/index.rst:134: WARNING: La citation [KELLER2009] n'est pas référencée [ref.citation]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/index.rst:139: WARNING: La citation [VAROQUAUX2010] n'est pas référencée [ref.citation]
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WARNING: Failed to import deepsulci.pattern_classification.method.svm.
Possible hints:
* AttributeError: module 'deepsulci.pattern_classification.method' has no attribute 'svm'
* ModuleNotFoundError: No module named 'pcl'
pcl.registration missing !
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WARNING: autodoc: failed to import module 'svm' from module 'deepsulci.pattern_classification.method'; the following exception was raised:
['Traceback (most recent call last):\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/lib/python3.11/importlib/__init__.py", line 126, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "<frozen importlib._bootstrap>", line 1206, in _gcd_import\n', ' File "<frozen importlib._bootstrap>", line 1178, in _find_and_load\n', ' File "<frozen importlib._bootstrap>", line 1149, in _find_and_load_unlocked\n', ' File "<frozen importlib._bootstrap>", line 690, in _load_unlocked\n', ' File "<frozen importlib._bootstrap_external>", line 940, in exec_module\n', ' File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>\n import pcl\n', "ModuleNotFoundError: No module named 'pcl'\n"] [autodoc.import_object]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] Aucun fichier ou dossier de ce nom: '../../../src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/pipeline/index.rst'. [docutils]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:21: WARNING: libellé dupliqué pipelines, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:26: WARNING: libellé dupliqué buildingblocks, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.resnet_labeling.patterndeeplabeling, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:32: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:47: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.resnet_training.patterndeeptraining, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:56: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:84: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.snipe_labeling.patternsnipelabeling, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:33: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:53: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.snipe_training.patternsnipetraining, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:50: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:74: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] Aucun fichier ou dossier de ce nom: '../../../src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/pipeline/index.rst'. [docutils]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:21: WARNING: libellé dupliqué pipelines, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:26: WARNING: libellé dupliqué buildingblocks, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:11: WARNING: libellé dupliqué deepsulci.sulci_labeling.capsul.error_computation.errorcomputation, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:38: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:55: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation]
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[100%] Built target capsul-devdoc
[100%] Built target capsul-doc
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
snap 1 : OpenGL error: invalid operation
lecture des sources... [ 5%] auto_examples/activateaction
lecture des sources... [ 7%] auto_examples/addMenuEntry
lecture des sources... [ 10%] auto_examples/aimsvolumetest
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QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/home_local/a-sac-ns-brainvisa/tmp/runtime-a-sac-ns-brainvisa'
error: XDG_RUNTIME_DIR is invalid or not set in the environment.
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/home_local/a-sac-ns-brainvisa/tmp/runtime-a-sac-ns-brainvisa'
error: XDG_RUNTIME_DIR is invalid or not set in the environment.
Starting Anatomist.....
config file : /home/a-sac-ns-brainvisa/.anatomist/config/settings.cfg
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
PyAnatomist Module present
PythonLauncher::runModules()
Multitexturing present
function glActiveTexture found.
function glClientActiveTexture found.
function glBlendEquation found.
function glTexImage3D found.
function glMultiTexCoord3f found.
function glBindFramebuffer found.
function glBindRenderbuffer found.
function glFramebufferTexture2D found.
function glGenFramebuffers found.
function glGenRenderbuffers found.
function glFramebufferRenderbuffer found.
function glRenderbufferStorage found.
function glCheckFramebufferStatus found.
function glDeleteRenderbuffers found.
function glDeleteFramebuffers found.
Number of texture units: 8
function glUniform1f found.
function glUniform1i found.
function glUniform4fv found.
function glGetUniformLocation found.
function glMultTransposeMatrixf found.
function glAttachShader found.
function glDetachShader found.
function glCompileShader found.
function glCreateProgram found.
function glCreateShader found.
function glDeleteProgram found.
function glDeleteShader found.
function glGetProgramiv found.
function glGetShaderiv found.
function glLinkProgram found.
function glShaderSource found.
function glUseProgram found.
GL_ARB_shadow present
GL_SGIX_shadow extension not available
GL_SGIX_depth_texture extension not available
GL_ARB_depth_texture extension present
GL_ARB_texture_cube_map extension present
GL_EXT_texture_cube_map extension present
Number of texture units: 8
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
observable 0x5708036fb3b0(N9anatomist7AVolumeIsEE) could not be removed from observer 0x57083b930858 (N9anatomist8Fusion2DE)
nifti transfo: 2
ATransformSet::unregisterObserver: ref 0x5708441b2310 not found
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
nifti transfo: 2
ATransformSet::unregisterObserver: ref 0x57084ba64430 not found
nifti transfo: 2
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
memory limit: 375822185267
Warning: wrong filename_base in graph, trying to fix it
bounding box found : 0, 0, 0
255, 255, 123
This plugin does not support propagateSizeHints()
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This plugin does not support propagateSizeHints()
lecture des sources... [ 98%] pyanatomist_wip
lecture des sources... [100%] sg_execution_times
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/anatomist/cpp/followerobject.py:docstring of anatomist.cpp.followerobject:6: WARNING: Inline literal start-string without end-string. [docutils]
WARNING: autodoc: failed to import module 'altas_viewer' from module 'anatomist'; the following exception was raised:
['Traceback (most recent call last):\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'anatomist.altas_viewer'\n"] [autodoc.import_object]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/anatomist/cpp/__init__.py:docstring of anatomist.cpp.newexecute:5: WARNING: Inline strong start-string without end-string. [docutils]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:20: WARNING: File not found: 'pyanatomist_base.html#anatomist.base.Anatomist' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:20: WARNING: File not found: 'pyanatomist_base.html#anatomist.base.Anatomist.AObject' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:20: WARNING: File not found: 'pyanatomist_base.html#anatomist.base.Anatomist.AWindow' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:583: WARNING: File not found: '../../anatomist/dev_doc/commands.html' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:588: WARNING: File not found: 'pyanatomist_direct.html' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:588: WARNING: File not found: 'pyanatomist_socket.html' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:590: WARNING: File not found: 'pyanatomist_threaded.html' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:599: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:762: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#load-an-object' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:857: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#view-an-object' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1325: WARNING: File not found: 'pyanatomist_base.html#anatomist.base.Anatomist.AWindow.camera' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1348: WARNING: File not found: 'pyanatomist_base.html#anatomist.base.Anatomist.AItem.getInfos' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1391: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#zoom-translation-and-rotation-of-a-volume' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1484: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#read-header-information-voxel-size-dimension-image' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1510: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#modification-of-color-palette' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1651: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#view-meshes' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1677: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#superimposing-objects' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1705: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#change-the-mesh-material' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1840: WARNING: File not found: 'pyanatomist_base.html#anatomist.base.Anatomist.fusionObjects' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1842: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#fusion-between-2-volumes' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:1979: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#load-a-transformation' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2004: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#load-an-existing-referential' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2166: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#load-referential-information-from-file-header' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2296: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#display-a-graph-of-roi' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2301: WARNING: File not found: 'pyanatomist_base.html#anatomist.base.Anatomist.execute' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2303: WARNING: File not found: '../../anatomist/dev_doc/commands.html' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2305: WARNING: File not found: '../../anatomist/dev_doc/commands.html#fusion2dparams' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2356: WARNING: File not found: '../../anatomist/doxygen/index.html' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2358: WARNING: File not found: 'pyanatomist_pyaims_tutorial.html' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2360: WARNING: File not found: '../../anatomist/user_doc/anatomist_tutorial.html#anasimpleviewer' [nbsphinx.localfile]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_tutorial_nb.ipynb:2360: WARNING: File not found: 'pyanatomist_examples.html#simple-viewer' [nbsphinx.localfile]
recherche des fichiers périmés... aucun résultat trouvé
Environnement de sérialisation... fait
vérification de la cohérence... /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_addons.rst: WARNING: Le document n'est inclus dans aucune toctree. [toc.not_included]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_base.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_base
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_cpp.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_cpp
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_direct.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_direct
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_headless.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_headless
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_howto.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_howto
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_notebook.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_notebook
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_pyaims_tutorial.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_pyaims_tutorial
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_socket.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_socket
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_threaded.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_threaded
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_wip.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_wip
fait
documents en préparation... fait
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Copie des fichiers statiques...
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/doc/pyanatomist-5.2/sphinx/_static/documentation_options.js
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/doc/pyanatomist-5.2/sphinx/_static/language_data.js
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/doc/pyanatomist-5.2/sphinx/_static/basic.css
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/doc/pyanatomist-5.2/sphinx/_static/classic.css
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/doc/pyanatomist-5.2/sphinx/_static/sidebar.js
Copie des fichiers statiques: fait
copie des fichiers complémentaires...
copie des fichiers complémentaires: fait
copie des ressources: fait
écriture... [ 2%] ana_notebook
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génération des index... genindex py-modindex fait
copying linked files...
copying notebooks ... [ 50%] ana_notebook.ipynb
copying notebooks ... [100%] pyanatomist_tutorial_nb.ipynb
Coloration syntaxique du code du module...[ 7%] _thread
Coloration syntaxique du code du module...[ 13%] anatomist
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Écriture des pages additionnelles... search fait
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Export de l'index de recherche en English (code: en)... fait
Export de l'inventaire des objets... fait
Sphinx-Gallery successfully executed 1 out of 1 file subselected by:
gallery_conf["filename_pattern"] = '/(anagraphannotate)|(aimsvolumetest)|(anaevensimplerviewer)|(control)|(ellipsoid)|(fusion3D)|(graph)|(graph_building)|(meshtest)|(nomenclatureselection)|(selection)|(volumetest)\\.py'
gallery_conf["ignore_pattern"] = '__init__\\.py'
after excluding 11 files that had previously been run (based on MD5).
embedding documentation hyperlinks...
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embedding documentation hyperlinks for auto_examples... [ 8%] nomenclatureselection.html
embedding documentation hyperlinks for auto_examples... [ 12%] sphere.html
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embedding documentation hyperlinks for auto_examples... [ 20%] customcommands.html
embedding documentation hyperlinks for auto_examples... [ 24%] fusion.html
embedding documentation hyperlinks for auto_examples... [ 28%] texturedrawing.html
embedding documentation hyperlinks for auto_examples... [ 32%] customopenglobject.html
embedding documentation hyperlinks for auto_examples... [ 36%] activateaction.html
embedding documentation hyperlinks for auto_examples... [ 40%] control.html
embedding documentation hyperlinks for auto_examples... [ 44%] addMenuEntry.html
embedding documentation hyperlinks for auto_examples... [ 48%] graph.html
embedding documentation hyperlinks for auto_examples... [ 52%] events.html
embedding documentation hyperlinks for auto_examples... [ 56%] fusion3D.html
embedding documentation hyperlinks for auto_examples... [ 60%] bvProcessSocket.html
embedding documentation hyperlinks for auto_examples... [ 64%] volumetest.html
embedding documentation hyperlinks for auto_examples... [ 68%] meshtest.html
embedding documentation hyperlinks for auto_examples... [ 72%] anatomistapiTests.html
embedding documentation hyperlinks for auto_examples... [ 76%] ellipsoid.html
embedding documentation hyperlinks for auto_examples... [ 80%] selection.html
embedding documentation hyperlinks for auto_examples... [ 84%] volumeMeasures.html
embedding documentation hyperlinks for auto_examples... [ 88%] index.html
embedding documentation hyperlinks for auto_examples... [ 92%] anaevensimplerviewer.html
embedding documentation hyperlinks for auto_examples... [ 96%] anagraphannotate.html
embedding documentation hyperlinks for auto_examples... [100%] aimsvolumetest.html
La compilation a réussi, 37 avertissements.
Les pages HTML sont dans ../../../share/doc/pyanatomist-5.2/sphinx.
Exiting Anatomist --- Goodbye.
The XKEYBOARD keymap compiler (xkbcomp) reports:
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Errors from xkbcomp are not fatal to the X server
[100%] Built target anatomist-gpl-sphinx
[100%] Create "share/doc/5.2"
[100%] Built target anatomist-gpl-devdoc
[100%] Built target anatomist-gpl-doc
[100%] Built target devdoc
[100%] Built target bv_doc_index
[100%] Built target axon-doc
[100%] Built target doc
bv_maker summary:
OK step doc: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build, started: 2025/09/19 03:51, stopped: 2025/09/19 03:52
All went good.
Finished: SUCCESS
![[Jenkins]](/builds/static/478a8f5f/images/svgs/logo.svg){kind=logo}
