embedding documentation hyperlinks for auto_examples... [ 92%] anaevensimplerviewer.html
embedding documentation hyperlinks for auto_examples... [ 96%] anagraphannotate.html
embedding documentation hyperlinks for auto_examples... [100%] aimsvolumetest.html
La compilation a réussi, 5 avertissements.
Les pages HTML sont dans ../../../share/doc/pyanatomist-5.2/sphinx.
PyAnatomist Module present
PythonLauncher::runModules()
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,208::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,251::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,286::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,322::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,336::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'.
The XKEYBOARD keymap compiler (xkbcomp) reports:
> Warning: Could not resolve keysym XF86AudioPreset
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> Warning: Could not resolve keysym XF86EmojiPicker
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> Warning: Could not resolve keysym XF86CameraAccessToggle
> Warning: Could not resolve keysym XF86BrightnessMin
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> Warning: Could not resolve keysym XF86NavInfo
> Warning: Could not resolve keysym XF86Macro1
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> Warning: Could not resolve keysym XF86MacroRecordStart
> Warning: Could not resolve keysym XF86MacroRecordStop
> Warning: Could not resolve keysym XF86MacroPresetCycle
> Warning: Could not resolve keysym XF86MacroPreset1
> Warning: Could not resolve keysym XF86MacroPreset2
> Warning: Could not resolve keysym XF86MacroPreset3
> Warning: Could not resolve keysym XF86KbdLcdMenu1
> Warning: Could not resolve keysym XF86KbdLcdMenu2
> Warning: Could not resolve keysym XF86KbdLcdMenu3
> Warning: Could not resolve keysym XF86KbdLcdMenu4
> Warning: Could not resolve keysym XF86KbdLcdMenu5
Errors from xkbcomp are not fatal to the X server
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,377::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,378::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,419::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,456::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,477::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:21,506::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'.
[ 96%] Built target anatomist-gpl-sphinx
[ 96%] Create "share/doc/5.2"
[ 96%] Built target anatomist-gpl-devdoc
[ 96%] Built target anatomist-gpl-doc
Process2 execution, a: 0.000000, b: blop
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,149::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,149::INFO::Found '3' process(es) in 'deepsulci.sulci_labeling.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,149::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,150::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,151::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.training.SulciDeepTraining'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,152::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,152::INFO::process: '3' files written for module 'sulci_labeling' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,152::INFO::Writing module 'sulci_labeling' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:24,152::INFO::Index: an index has been written for module 'sulci_labeling' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:25,196::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:25,242::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:25,242::INFO::Summary: '14' files written for module 'capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:25,759::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:25,759::INFO::Found '40' process(es) in 'morphologist.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:25,760::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:26,074::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:26,119::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:26,182::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:26,183::INFO::Summary: '14' files written for module 'capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:26,667::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:26,667::INFO::Found '40' process(es) in 'morphologist.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:26,668::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:27,545::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:27,546::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:27,546::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:27,546::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_view.py::2025-10-09 03:50:27,547::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,450::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,455::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,502::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,508::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,542::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,584::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,594::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,614::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,623::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,632::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:28,638::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,048::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,053::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,100::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,106::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,139::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,142::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,153::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,162::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,162::INFO::pipeline: '14' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,162::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,163::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,164::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,164::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,165::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,166::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,166::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,167::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,167::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,168::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,168::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,169::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,170::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,173::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,174::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,174::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,175::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,175::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,176::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,177::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,177::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,178::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,178::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,179::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,179::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,180::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,181::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,181::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,181::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,182::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,182::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,183::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,183::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,184::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,185::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,185::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,186::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,186::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,190::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,191::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,191::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,192::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,192::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,192::INFO::process: '40' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,192::INFO::Writing module 'capsul' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,192::INFO::Index: an index has been written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,211::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,221::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,229::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:29,235::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist', '--schema']
chargement des traductions [en]... fait
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... fait
chargement de l'inventaire intersphinx 'somabase' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv'
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[autosummary] engendrement d’un auto-sommaire pour : index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, sulpated.rst
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:30,001::INFO::pipeline: '14' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:30,001::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:30,004::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:30,004::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:30,008::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
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Écriture des pages additionnelles... search fait
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Export de l'index de recherche en English (code: en)... fait
Export de l'inventaire des objets... fait
La compilation a réussi, 19 avertissements.
Les pages HTML sont dans ../../share/doc/morphologist-5.2/user_doc.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,150::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,150::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,151::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,151::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,151::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,151::INFO::Found '4' process(es) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,151::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,152::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,153::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,153::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,154::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,154::INFO::process: '4' files written for module 'pattern_classification' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,154::INFO::Writing module 'pattern_classification' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2025-10-09 03:50:31,154::INFO::Index: an index has been written for module 'pattern_classification' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification.
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generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.sulci_labeling.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci', '--schema']
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.pattern_classification.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci', '--schema']
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WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-base-5.3/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyaims-5.2/sphinx/objects.inv'
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chargement de l'inventaire intersphinx 'somaworkflow' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyanatomist-5.2/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/pyanatomist-5.2/sphinx/objects.inv'
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intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/share/doc/soma-workflow-3.3/sphinx/objects.inv'
[autosummary] engendrement d’un auto-sommaire pour : api.rst, index.rst, process_docs/deepsulci/pattern_classification/index.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst, process_docs/deepsulci/pattern_classification/process/index.rst, process_docs/deepsulci/sulci_labeling/index.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst, process_docs/deepsulci/sulci_labeling/process/index.rst
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:30: WARNING: libellé dupliqué morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:70: WARNING: libellé dupliqué morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
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WARNING: Failed to import deepsulci.pattern_classification.method.svm.
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* AttributeError: module 'deepsulci.pattern_classification.method' has no attribute 'svm'
* ModuleNotFoundError: No module named 'pcl'
pcl.registration missing !
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WARNING: autodoc: failed to import module 'svm' from module 'deepsulci.pattern_classification.method'; the following exception was raised:
['Traceback (most recent call last):\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/lib/python3.11/importlib/__init__.py", line 126, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "<frozen importlib._bootstrap>", line 1206, in _gcd_import\n', ' File "<frozen importlib._bootstrap>", line 1178, in _find_and_load\n', ' File "<frozen importlib._bootstrap>", line 1149, in _find_and_load_unlocked\n', ' File "<frozen importlib._bootstrap>", line 690, in _load_unlocked\n', ' File "<frozen importlib._bootstrap_external>", line 940, in exec_module\n', ' File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>\n import pcl\n', "ModuleNotFoundError: No module named 'pcl'\n"] [autodoc.import_object]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] Aucun fichier ou dossier de ce nom: '../../../src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/pipeline/index.rst'. [docutils]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:21: WARNING: libellé dupliqué pipelines, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:26: WARNING: libellé dupliqué buildingblocks, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.resnet_labeling.patterndeeplabeling, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:32: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:47: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.resnet_training.patterndeeptraining, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining]
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:84: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.snipe_labeling.patternsnipelabeling, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:33: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:53: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.snipe_training.patternsnipetraining, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:50: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:74: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:23: CRITICAL: Problems with "include" directive path:
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:55: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation]
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst:36: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst:69: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst:11: WARNING: libellé dupliqué deepsulci.sulci_labeling.capsul.training.sulcideeptraining, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst:60: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst:88: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining]
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul/doc/source/tutorial/capsul_tutorial.ipynb:1724: ERROR: Duplicate substitution definition name: "xml pipeline". [docutils]
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Coloration syntaxique du code du module...[ 71%] capsul.qt_gui.widgets.viewer_widget
Coloration syntaxique du code du module...[ 72%] capsul.sphinxext.layoutdocgen
Coloration syntaxique du code du module...[ 73%] capsul.sphinxext.load_pilots
Coloration syntaxique du code du module...[ 74%] capsul.sphinxext.pipelinedocgen
Coloration syntaxique du code du module...[ 76%] capsul.sphinxext.usecasesdocgen
Coloration syntaxique du code du module...[ 77%] capsul.study_config.config_modules.attributes_config
Coloration syntaxique du code du module...[ 78%] capsul.study_config.config_modules.brainvisa_config
Coloration syntaxique du code du module...[ 79%] capsul.study_config.config_modules.fom_config
Coloration syntaxique du code du module...[ 81%] capsul.study_config.config_modules.freesurfer_config
Coloration syntaxique du code du module...[ 82%] capsul.study_config.config_modules.fsl_config
Coloration syntaxique du code du module...[ 83%] capsul.study_config.config_modules.matlab_config
Coloration syntaxique du code du module...[ 85%] capsul.study_config.config_modules.nipype_config
Coloration syntaxique du code du module...[ 86%] capsul.study_config.config_modules.smartcaching_config
Coloration syntaxique du code du module...[ 87%] capsul.study_config.config_modules.somaworkflow_config
Coloration syntaxique du code du module...[ 88%] capsul.study_config.config_modules.spm_config
Coloration syntaxique du code du module...[ 90%] capsul.study_config.config_utils
Coloration syntaxique du code du module...[ 91%] capsul.study_config.memory
Coloration syntaxique du code du module...[ 92%] capsul.study_config.process_instance
Coloration syntaxique du code du module...[ 94%] capsul.study_config.run
Coloration syntaxique du code du module...[ 95%] capsul.study_config.study_config
Coloration syntaxique du code du module...[ 96%] capsul.subprocess.fsl
Coloration syntaxique du code du module...[ 97%] capsul.subprocess.spm
Coloration syntaxique du code du module...[ 99%] capsul.utils.finder
Coloration syntaxique du code du module...[100%] capsul.utils.version_utils
Écriture des pages additionnelles... search fait
copie des images... [ 6%] tutorial/images/capsul_pipeline1.jpg
copie des images... [ 11%] tutorial/images/capsul_controller1.jpg
copie des images... [ 17%] tutorial/images/capsul_pipeline2.jpg
copie des images... [ 22%] tutorial/images/capsul_pipeline_xml2.jpg
copie des images... [ 28%] tutorial/images/capsul_pipeline_xml2_controller.jpg
copie des images... [ 33%] tutorial/images/capsul_pipeline_xml1.jpg
copie des images... [ 39%] tutorial/images/capsul_pipeline_xml1_controller.jpg
copie des images... [ 44%] tutorial/images/capsul_pipeline3.jpg
copie des images... [ 50%] tutorial/images/capsul_iter1.jpg
copie des images... [ 56%] tutorial/images/capsul_pipeline5.jpg
copie des images... [ 61%] tutorial/images/capsul_pipeline6.jpg
copie des images... [ 67%] tutorial/images/capsul_pipeline6b.jpg
copie des images... [ 72%] tutorial/images/capsul_pipeline7.jpg
copie des images... [ 78%] tutorial/images/capsul_fom1.jpg
copie des images... [ 83%] tutorial/images/capsul_fom1_compl.jpg
copie des images... [ 89%] tutorial/images/capsul_fom1_controller.jpg
copie des images... [ 94%] tutorial/images/capsul_fom2.jpg
copie des images... [100%] tutorial/images/capsul_fom2_compl.jpg
Export de l'index de recherche en English (code: en)... fait
Export de l'inventaire des objets... fait
La compilation a réussi, 4 avertissements.
Les pages HTML sont dans ../../share/doc/capsul-2.6.
[100%] Built target capsul-sphinx
[100%] Create "share/doc/2.6"
[100%] Built target capsul-devdoc
[100%] Built target devdoc
[100%] Built target capsul-doc
[100%] Built target bv_doc_index
[100%] Built target axon-doc
[100%] Built target doc
bv_maker summary:
OK step doc: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build, started: 2025/10/09 03:50, stopped: 2025/10/09 03:50
All went good.
Finished: SUCCESS
![[Jenkins]](/builds/static/478a8f5f/images/svgs/logo.svg){kind=logo}
