Started
Running as brainvisa
----------------------------------------
$ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=brainvisa-sf-6.0 -- sources
----------------------------------------
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Depuis https://github.com/brainvisa/anatomist-free
bbf793cb..a5711c85 master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Mise à jour bbf793cb..a5711c85
Fast-forward
shared/rgb/Mouse_ABA_v3.dim | 5 +++++
shared/rgb/Mouse_ABA_v3.ima | Bin 0 -> 3981 bytes
shared/rgb/Mouse_ABA_v3.ima.minf | 6 ++++++
3 files changed, 11 insertions(+)
create mode 100644 shared/rgb/Mouse_ABA_v3.dim
create mode 100644 shared/rgb/Mouse_ABA_v3.ima
create mode 100644 shared/rgb/Mouse_ABA_v3.ima.minf
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/axon
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/bioprocessing
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Depuis https://bioproj.extra.cea.fr/git/bioprocessing
47145d2..1efaef3 master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Mise à jour 47145d2..1efaef3
Fast-forward
.../DigitalAtlasHierarchyGenerateFromJson.py | 180 +++++++++++++++------
1 file changed, 130 insertions(+), 50 deletions(-)
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainrat-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainrat-private
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-share
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-spm
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa_freesurfer
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/capsul
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/constellation-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/constellation-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/cortical_surface-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/cortical_surface-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/disco
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/highres-cortex
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-baby
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-ui
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/nuclear_imaging-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/nuclear_imaging-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/populse-db
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/primatologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Depuis https://bioproj.extra.cea.fr/git/primatologist-gpl
bcee21e..c0d8b66 master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Mise à jour bcee21e..c0d8b66
Fast-forward
.../processes/analysis/HierarchicalRoiAnalysis.py | 25 ++++++++++++++++------
1 file changed, 18 insertions(+), 7 deletions(-)
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-base
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-io
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-workflow
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/sulci-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
Summary of Git repositories in /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src
============================================================================================
┌───── * uncommitted working tree changes
│┌──── + uncommitted index changes
││┌─── $ stash present
│││┌── % untracked files
││││ ┌ HEAD
││││ │ ┌ update status
││││ │ │ ┌ bv_maker upstream state
││││ │ │ │ ┌ Git upstream state
││││ │ │ │ │┌ Directory
master (ead93684) ✓ U= aims-free
master (87e39e9) ✓ U= aims-gpl
master (a5711c85) ✓ U= anatomist-free
master (d3663a1) ✓ U= anatomist-gpl
master (d2865cc4) ✓ U= axon
master (1efaef3) ✓ U= bioprocessing
master (863e579) ✓ U= brainrat-gpl
master (20f9016) ✓ U= brainrat-private
master (c924c10) ✓ U= brainvisa-cmake
master (c924c10) ✓ U= brainvisa-cmake
master (869819a) ✓ U= brainvisa-share
master (e77cda3) ✓ U= brainvisa-spm
master (80716f7) ✓ U= brainvisa_freesurfer
master (048dae00) ✓ U= capsul
master (5bb66e6) ✓ U= constellation-gpl
master (ccb3558) ✓ U= constellation-nonfree
master (0ac8a75) ✓ U= cortical_surface-gpl
master (c20dd90) ✓ U= cortical_surface-nonfree
master (e28a829) ✓ U= disco
master (4bb7822) ✓ U= highres-cortex
master (e72510d) ✓ U= morpho-deepsulci
master (081d314) ✓ U= morphologist-baby
master (4333dbf9) ✓ U= morphologist-gpl
master (c8cf86b) ✓ U= morphologist-nonfree
master (c22bab8) ✓ U= morphologist-ui
master (8b414ab2) ✓ U= nuclear_imaging-gpl
master (70608fe) ✓ U= nuclear_imaging-nonfree
master (6ab5f80) ✓ U= populse-db
master (c0d8b66) ✓ U= primatologist-gpl
master (f6a92dc) ✓ U= soma-base
master (edd62eb) ✓ U= soma-io
master (9e731d2) ✓ U= soma-workflow
master (cb2e0eb) ✓ U= sulci-nonfree
bv_maker summary:
OK step sources: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src, started: 2025/10/10 03:47, stopped: 2025/10/10 03:47
All went good.
Finished: SUCCESS