download done
installing demo_data.zip ...
* Import test data
Process Import T1 MRI started on 2025/11/01 04:34filein : /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_pipeline/data_unprocessed/sujet01/anatomy/sujet01.ima
fileout : /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_pipeline/db_morphologist/test/sujet01/t1mri/default_acquisition/sujet01.nii
encoding: Binary
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rescale : 0
format :
type : S16
objtype :
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ydim : 0
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imin : default
imax : default
omin : default
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reading /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_pipeline/data_unprocessed/sujet01/anatomy/sujet01.ima as Volume / S16...
reading done
convert to Volume / S16
converting data...
convert done
writing /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_pipeline/db_morphologist/test/sujet01/t1mri/default_acquisition/sujet01.nii...
done
Process Import T1 MRI finished on 2025/11/01 04:34 (1 seconds)(not doing ANN sulci recognition tests today)
* Check SPAM models installation
Process Check SPAM models installation started on 2025/11/01 04:34models: 6SPAM models are present.Process Check SPAM models installation finished on 2025/11/01 04:34 (0 seconds)* Run Morphologist
Process Morphologist 2023 started on 2025/11/01 04:34progress: 0.0 % ...progress: 0.0 % ...Left hemisphere point not specified - X axis flip will not be checkedOK, the image seems to be in the correct orientation.progress: 8.333333333333332 % ...progress: 8.333333333333332 % ...progress: 16.666666666666664 % ...progress: 25.0 % ...progress: 33.33333333333333 % ...Skip unselected node: Skull-stripped brain normalizationprogress: 41.66666666666667 % ...progress: 50.0 % ...progress: 58.333333333333336 % ...progress: 66.66666666666666 % ...progress: 66.66666666666666 % ...progress: 66.66666666666666 % ...Computing left hemisphere grey-white classification...progress: 67.26190476190476 % ...Detecting left hemisphere spherical inner cortical interface...progress: 67.85714285714285 % ...Reconstructing left hemisphere white mesh...progress: 68.45238095238095 % ...Computing left sulci skeleton and buried gyrus watershed...progress: 69.04761904761905 % ...Detecting left hemisphere spherical outer cortical surface...Reconstructing left hemisphere pial mesh...progress: 69.64285714285715 % ...Building left hemisphere attributed relational sulci graph...Process Hemisphere Sulci Voronoi started on 2025/11/01 04:36Process Hemisphere Sulci Voronoi finished on 2025/11/01 04:36 (17 seconds)Process Hemisphere Sulci Thickness and Volumes started on 2025/11/01 04:36Process Hemisphere Sulci Thickness and Volumes finished on 2025/11/01 04:37 (13
seconds)Talairach-AC/PC-Anatomist appended
progress: 70.23809523809524 % ...progress: 70.23809523809524 % ...progress: 70.23809523809524 % ...progress: 70.53571428571428 % ...progress: 70.53571428571428 % ...progress: 70.83333333333334 % ...progress: 70.83333333333334 % ...progress: 70.83333333333334 % ...progress: 70.83333333333334 % ...progress: 70.83333333333334 % ...progress: 70.83333333333334 % ...Computing right hemisphere grey-white classification...progress: 71.42857142857143 % ...Detecting right hemisphere spherical inner cortical interface...progress: 72.02380952380952 % ...Reconstructing right hemisphere white mesh...progress: 72.61904761904762 % ...Computing right sulci skeleton and buried gyrus watershed...progress: 73.21428571428572 % ...Detecting right hemisphere spherical outer cortical surface...Reconstructing right hemisphere pial mesh...progress: 73.80952380952381 % ...Building right hemisphere attributed relational sulci graph...Process Hemisphere Sulci Voronoi started on 2025/11/01 04:41Process Hemisphere Sulci Voronoi finished on 2025/11/01 04:41 (17 seconds)Process Hemisphere Sulci Thickness and Volumes started on 2025/11/01 04:41Process Hemisphere Sulci Thickness and Volumes finished on 2025/11/01 04:41 (13
seconds)Talairach-AC/PC-Anatomist appended
progress: 74.40476190476191 % ...progress: 74.40476190476191 % ...progress: 74.40476190476191 % ...progress: 74.70238095238095 % ...progress: 74.70238095238095 % ...progress: 75.0 % ...progress: 75.0 % ...progress: 75.0 % ...progress: 75.0 % ...progress: 75.0 % ...progress: 75.0 % ...Reading FGraph version 3.1
Reading FGraph version 3.1
progress: 83.33333333333334 % ...Extracting left and right CSF inside sulci.Process CSF Classif started on 2025/11/01 04:44Process CSF Classif finished on 2025/11/01 04:44 (15 seconds)Computing volumes.Reading FGraph version 3.1
Reading FGraph version 3.1
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2 components
component 1 : 6602396 points
subjectleft.WMright.WMboth.WMleft.GMright.GMboth.GMleft.CSFright.CSFboth.CSFleft.hemi_volumeright.hemi_volumeboth.brain_volumeboth.hemi_closed_volumeboth.eTIVboth.cerebellum_stem_volumeleft.brain_volumeright.brain_volumeleft.hull_arearight.hull_arealeft.skel_pointsright.skel_pointsleft.skel_labelled_pointsright.skel_labelled_pointslog_ratio.skel_pointslog_ratio.skel_labelled_pointsleft.gi_native_spaceleft.gi_talairach_spaceboth.gi_native_spaceboth.gi_talairach_spaceleft.fold_lengthright.fold_lengthboth.fold_lengthleft.mean_depthright.mean_depthboth.mean_depthleft.mean_thicknessright.mean_thicknessboth.mean_thicknessleft.mean_openingright.mean_openingboth.mean_openingboth.skel_pointsboth.skel_labelled_pointsleft.GM_arearight.GM_areaboth.GM_arealeft.WM_arearight.WM_areaboth.WM_areasujet01274622.706278323.605552946.311326422.63326002.865604746.23576861.39874417.703151279.102601045.336604326.4691347397.0851403757.4781607415.533142014.732641998.602645435.29749038.60249076.30147597478914266042777-0.006-0.0032.1252.1252.132.133932.44040.87973.212.56612.50712.5364.2224.1884.2050.650.6510.6519548885437124376.789123553.281247930.07102920.727102707.25205627.977progress: 91.66666666666666 % ...Morphologist reportfiltering...
after filtering: 1 components
Starting Anatomist.....
config file : /home/a-sac-ns-brainvisa/.anatomist/config/settings.cfg
This plugin does not support propagateSizeHints()
PyAnatomist Module present
PythonLauncher::runModules()
nifti transfo: 1
This plugin does not support propagateSizeHints()
Load transformation : overriding existing one
Multitexturing present
function glActiveTexture found.
function glClientActiveTexture found.
function glBlendEquation found.
function glTexImage3D found.
function glMultiTexCoord3f found.
function glBindFramebuffer found.
function glBindRenderbuffer found.
function glFramebufferTexture2D found.
function glGenFramebuffers found.
function glGenRenderbuffers found.
function glFramebufferRenderbuffer found.
function glRenderbufferStorage found.
function glCheckFramebufferStatus found.
function glDeleteRenderbuffers found.
function glDeleteFramebuffers found.
Number of texture units: 8
function glUniform1f found.
function glUniform1i found.
function glUniform4fv found.
function glGetUniformLocation found.
function glMultTransposeMatrixf found.
function glAttachShader found.
function glDetachShader found.
function glCompileShader found.
function glCreateProgram found.
function glCreateShader found.
function glDeleteProgram found.
function glDeleteShader found.
function glGetProgramiv found.
function glGetShaderiv found.
function glLinkProgram found.
function glShaderSource found.
function glUseProgram found.
GL_ARB_shadow present
GL_SGIX_shadow extension not available
GL_SGIX_depth_texture extension not available
GL_ARB_depth_texture extension present
GL_ARB_texture_cube_map extension present
GL_EXT_texture_cube_map extension present
Number of texture units: 8
This plugin does not support raise()
This plugin does not support propagateSizeHints()
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
snap 1 : OpenGL error: invalid operation
This plugin does not support propagateSizeHints()
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
snap 1 : OpenGL error: invalid operation
This plugin does not support propagateSizeHints()
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
snap 1 : OpenGL error: invalid operation
memory limit: 293609845555
Reading FGraph version 3.1
bounding box found : 116, 53, 15
203, 237, 114
memory limit: 293613489356
Reading FGraph version 3.1
bounding box found : 46, 52, 10
132, 238, 108
snap 1 : OpenGL error: invalid operation
global modules: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/share/anatomist-5.2/python_plugins
home modules: /home/a-sac-ns-brainvisa/.anatomist/python_plugins
loading module statsplotwindow
loading module gltf_io
Anatomist started.
loading module valuesplotwindow
loading module anacontrolmenu
loading module ana_image_math
loading module histogram
loading module modelGraphs
loading module infowindow
loading module volumepalettes
loading module profilewindow
loading module simple_controls
loading module gradientpalette
loading module bundles_small_brains
loading module bsa_proba
loading module paletteViewer
loading module selection
loading module foldsplit
loading module bundles_split_by_cortical_regions
loading module meshsplit
loading module measure
loading module save_resampled
loading module palettecontrols
all python modules loaded
Anatomist started.
Status: OKobservable 0x618f47b739d0(N9anatomist7AVolumeIsEE) could not be removed from observer 0x618f47c575f8 (N9anatomist8Fusion2DE)
progress: 100.0 % ...Process Morphologist 2023 finished on 2025/11/01 04:44 (10 minutes 20 seconds)* Run CNN recognition
Process Morphologist 2023 started on 2025/11/01 04:45progress: 0.0 % ...Skip unselected node: Image orientation handlingprogress: 8.333333333333332 % ...Skip unselected node: T1 Bias Correctionprogress: 16.666666666666664 % ...Skip unselected node: Histogram analysisprogress: 25.0 % ...Skip unselected node: Compute Brain Maskprogress: 33.33333333333333 % ...Skip unselected node: Skull-stripped brain normalizationprogress: 41.66666666666667 % ...Skip unselected node: Split Brain Maskprogress: 50.0 % ...Skip unselected node: Talairach transformation from manual AC/PCprogress: 58.333333333333336 % ...Skip unselected node: Head Meshprogress: 66.66666666666666 % ...progress: 66.66666666666666 % ...progress: 66.66666666666666 % ...Skip unselected node: Grey White Classificationprogress: 67.26190476190476 % ...Skip unselected node: Grey White Topology Correctionprogress: 67.85714285714285 % ...Skip unselected node: Grey White Meshprogress: 68.45238095238095 % ...Skip unselected node: Sulci Skeleton and Rootsprogress: 69.04761904761905 % ...Skip unselected node: Pial Meshprogress: 69.64285714285715 % ...Skip unselected node: Cortical Folds Graphprogress: 70.23809523809524 % ...progress: 70.23809523809524 % ...soma-workflow starting in light mode
Workflow controller initialised
Soma-workflow temp directory: /home_local/a-sac-ns-brainvisa/tmp/axon_test_f1kymam9/tmp/soma_workflow_n95j7po4
del WorkflowController
progress: 70.83333333333334 % ...progress: 70.83333333333334 % ...progress: 70.83333333333334 % ...progress: 70.83333333333334 % ...Skip unselected node: Grey White Classificationprogress: 71.42857142857143 % ...Skip unselected node: Grey White Topology Correctionprogress: 72.02380952380952 % ...Skip unselected node: Grey White Meshprogress: 72.61904761904762 % ...Skip unselected node: Sulci Skeleton and Rootsprogress: 73.21428571428572 % ...Skip unselected node: Pial Meshprogress: 73.80952380952381 % ...Skip unselected node: Cortical Folds Graphprogress: 74.40476190476191 % ...progress: 74.40476190476191 % ...soma-workflow starting in light mode
Workflow controller initialised
Soma-workflow temp directory: /home_local/a-sac-ns-brainvisa/tmp/axon_test_f1kymam9/tmp/soma_workflow_2_e7ksa_
del WorkflowController
progress: 75.0 % ...progress: 75.0 % ...progress: 75.0 % ...progress: 75.0 % ...Reading FGraph version 3.3
Reading FGraph version 3.1
Warning: wrong filename_base in graph, trying to fix it
progress: 83.33333333333334 % ...Extracting left and right CSF inside sulci.Process CSF Classif started on 2025/11/01 04:46Process CSF Classif finished on 2025/11/01 04:47 (17 seconds)Computing volumes.Reading FGraph version 3.3
Reading FGraph version 3.1
Warning: wrong filename_base in graph, trying to fix it
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2 components
component 1 : 6602396 points
subjectleft.WMright.WMboth.WMleft.GMright.GMboth.GMleft.CSFright.CSFboth.CSFleft.hemi_volumeright.hemi_volumeboth.brain_volumeboth.hemi_closed_volumeboth.eTIVboth.cerebellum_stem_volumeleft.brain_volumeright.brain_volumeleft.hull_arearight.hull_arealeft.skel_pointsright.skel_pointsleft.skel_labelled_pointsright.skel_labelled_pointslog_ratio.skel_pointslog_ratio.skel_labelled_pointsleft.gi_native_spaceleft.gi_talairach_spaceboth.gi_native_spaceboth.gi_talairach_spaceleft.fold_lengthright.fold_lengthboth.fold_lengthleft.mean_depthright.mean_depthboth.mean_depthleft.mean_thicknessright.mean_thicknessboth.mean_thicknessleft.mean_openingright.mean_openingboth.mean_openingboth.skel_pointsboth.skel_labelled_pointsleft.GM_arearight.GM_areaboth.GM_arealeft.WM_arearight.WM_areaboth.WM_areasujet01274622.706278323.605552946.311326422.63326002.865604746.23589999.60274417.703164417.305601045.336604326.4691347397.0851403757.4781607415.533142014.732628860.398645435.29749038.60249076.30147597478914268942777-0.006-0.0022.1252.1252.1312.133931.44040.87972.212.57612.50712.5423.8374.1884.0120.7820.6510.7179548885466124376.789123553.281247930.07102920.727102707.25205627.977progress: 91.66666666666666 % ...Morphologist reportThis plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
filtering...
after filtering: 1 components
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
snap 1 : OpenGL error: invalid operation
This plugin does not support propagateSizeHints()
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
snap 1 : OpenGL error: invalid operation
This plugin does not support propagateSizeHints()
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
Load transformation : overriding existing one
snap 1 : OpenGL error: invalid operation
memory limit: 293127294156
Reading FGraph version 3.3
bounding box found : 116, 52, 14
203, 238, 114
Load transformation : overriding existing one
Load transformation : overriding existing one
memory limit: 293146784563
Reading FGraph version 3.1
Warning: wrong filename_base in graph, trying to fix it
bounding box found : 46, 52, 10
132, 238, 108
Load transformation : overriding existing one
Load transformation : overriding existing one
snap 1 : OpenGL error: invalid operation
Status: OKobservable 0x618f4f49ab40(N9anatomist7AVolumeIsEE) could not be removed from observer 0x618f50702318 (N9anatomist8Fusion2DE)
progress: 100.0 % ...Process Morphologist 2023 finished on 2025/11/01 04:47 (2 minutes 21 seconds)FAIL
======================================================================
FAIL: test_pipeline_results (__main__.TestMorphologistPipeline.test_pipeline_results)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/lib/python3.11/site-packages/brainvisa/tests/test_morphologist.py", line 478, in test_pipeline_results
self.assertTrue(
AssertionError: False is not true : The content of /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_pipeline/db_morphologist/test/sujet01/t1mri/default_acquisition/default_analysis/segmentation/brain_volumes_sujet01.csv in test is different from the reference results /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/ref/test_morphologist_pipeline/db_morphologist/test/sujet01/t1mri/default_acquisition/default_analysis/segmentation/brain_volumes_sujet01.csv.
----------------------------------------------------------------------
Ran 1 test in 810.177s
FAILED (failures=1)
RETURNCODE: False
The XKEYBOARD keymap compiler (xkbcomp) reports:
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> Warning: Could not resolve keysym XF86Keyboard
> Warning: Could not resolve keysym XF86MonBrightnessCycle
> Warning: Could not resolve keysym XF86BrightnessAuto
> Warning: Could not resolve keysym XF86DisplayOff
> Warning: Could not resolve keysym XF86WWAN
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> Warning: Could not resolve keysym XF86Info
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> Warning: Could not resolve keysym XF86ZoomReset
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> Warning: Could not resolve keysym XF86Presentation
> Warning: Could not resolve keysym XF86Database
> Warning: Could not resolve keysym XF86Voicemail
> Warning: Could not resolve keysym XF86Addressbook
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> Warning: Could not resolve keysym XF86SpellCheck
> Warning: Could not resolve keysym XF86ContextMenu
> Warning: Could not resolve keysym XF86MediaRepeat
> Warning: Could not resolve keysym XF8610ChannelsUp
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> Warning: Could not resolve keysym XF86Images
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> Warning: Could not resolve keysym XF86FnRightShift
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> Warning: Could not resolve keysym XF86NumericPound
> Warning: Could not resolve keysym XF86NumericA
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> Warning: Could not resolve keysym XF86CameraFocus
> Warning: Could not resolve keysym XF86WPSButton
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> Warning: Could not resolve keysym XF86CameraUp
> Warning: Could not resolve keysym XF86CameraDown
> Warning: Could not resolve keysym XF86CameraLeft
> Warning: Could not resolve keysym XF86CameraRight
> Warning: Could not resolve keysym XF86AttendantOn
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> Warning: Could not resolve keysym XF86AttendantToggle
> Warning: Could not resolve keysym XF86LightsToggle
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> Warning: Could not resolve keysym XF86Buttonconfig
> Warning: Could not resolve keysym XF86Taskmanager
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> Warning: Could not resolve keysym XF86ControlPanel
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> Warning: Could not resolve keysym XF86Screensaver
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> Warning: Could not resolve keysym XF86Assistant
> Warning: Could not resolve keysym XF86EmojiPicker
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> Warning: Could not resolve keysym XF86CameraAccessEnable
> Warning: Could not resolve keysym XF86CameraAccessDisable
> Warning: Could not resolve keysym XF86CameraAccessToggle
> Warning: Could not resolve keysym XF86BrightnessMin
> Warning: Could not resolve keysym XF86BrightnessMax
> Warning: Could not resolve keysym XF86KbdInputAssistPrev
> Warning: Could not resolve keysym XF86KbdInputAssistNext
> Warning: Could not resolve keysym XF86KbdInputAssistPrevgroup
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> Warning: Could not resolve keysym XF86KbdInputAssistAccept
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> Warning: Could not resolve keysym XF86RootMenu
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> Warning: Could not resolve keysym XF86Numeric11
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> Warning: Could not resolve keysym XF86AudioDesc
> Warning: Could not resolve keysym XF863DMode
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> Warning: Could not resolve keysym XF86StopRecord
> Warning: Could not resolve keysym XF86PauseRecord
> Warning: Could not resolve keysym XF86VOD
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> Warning: Could not resolve keysym XF86Data
> Warning: Could not resolve keysym XF86OnScreenKeyboard
> Warning: Could not resolve keysym XF86PrivacyScreenToggle
> Warning: Could not resolve keysym XF86SelectiveScreenshot
> Warning: Could not resolve keysym XF86NextElement
> Warning: Could not resolve keysym XF86PreviousElement
> Warning: Could not resolve keysym XF86AutopilotEngageToggle
> Warning: Could not resolve keysym XF86MarkWaypoint
> Warning: Could not resolve keysym XF86Sos
> Warning: Could not resolve keysym XF86NavChart
> Warning: Could not resolve keysym XF86FishingChart
> Warning: Could not resolve keysym XF86SingleRangeRadar
> Warning: Could not resolve keysym XF86DualRangeRadar
> Warning: Could not resolve keysym XF86RadarOverlay
> Warning: Could not resolve keysym XF86TraditionalSonar
> Warning: Could not resolve keysym XF86ClearvuSonar
> Warning: Could not resolve keysym XF86SidevuSonar
> Warning: Could not resolve keysym XF86NavInfo
> Warning: Could not resolve keysym XF86Macro1
> Warning: Could not resolve keysym XF86Macro2
> Warning: Could not resolve keysym XF86Macro3
> Warning: Could not resolve keysym XF86Macro4
> Warning: Could not resolve keysym XF86Macro5
> Warning: Could not resolve keysym XF86Macro6
> Warning: Could not resolve keysym XF86Macro7
> Warning: Could not resolve keysym XF86Macro8
> Warning: Could not resolve keysym XF86Macro9
> Warning: Could not resolve keysym XF86Macro10
> Warning: Could not resolve keysym XF86Macro11
> Warning: Could not resolve keysym XF86Macro12
> Warning: Could not resolve keysym XF86Macro13
> Warning: Could not resolve keysym XF86Macro14
> Warning: Could not resolve keysym XF86Macro15
> Warning: Could not resolve keysym XF86Macro16
> Warning: Could not resolve keysym XF86Macro17
> Warning: Could not resolve keysym XF86Macro18
> Warning: Could not resolve keysym XF86Macro19
> Warning: Could not resolve keysym XF86Macro20
> Warning: Could not resolve keysym XF86Macro21
> Warning: Could not resolve keysym XF86Macro22
> Warning: Could not resolve keysym XF86Macro23
> Warning: Could not resolve keysym XF86Macro24
> Warning: Could not resolve keysym XF86Macro25
> Warning: Could not resolve keysym XF86Macro26
> Warning: Could not resolve keysym XF86Macro27
> Warning: Could not resolve keysym XF86Macro28
> Warning: Could not resolve keysym XF86Macro29
> Warning: Could not resolve keysym XF86Macro30
> Warning: Could not resolve keysym XF86MacroRecordStart
> Warning: Could not resolve keysym XF86MacroRecordStop
> Warning: Could not resolve keysym XF86MacroPresetCycle
> Warning: Could not resolve keysym XF86MacroPreset1
> Warning: Could not resolve keysym XF86MacroPreset2
> Warning: Could not resolve keysym XF86MacroPreset3
> Warning: Could not resolve keysym XF86KbdLcdMenu1
> Warning: Could not resolve keysym XF86KbdLcdMenu2
> Warning: Could not resolve keysym XF86KbdLcdMenu3
> Warning: Could not resolve keysym XF86KbdLcdMenu4
> Warning: Could not resolve keysym XF86KbdLcdMenu5
Errors from xkbcomp are not fatal to the X server
Exception ignored in: <function TemporaryDirectory.__del__ at 0x758f70e24ea0>
Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/lib/python3.11/site-packages/brainvisa/data/neuroDiskItems.py", line 2669, in __del__
TypeError: 'NoneType' object is not callable
Exiting Anatomist --- Goodbye.
Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake/bin/bv_run_pixi_env.py", line 75, in <module>
subprocess.check_call(cmd, cwd=wd, env=env)
File "/usr/lib/python3.12/subprocess.py", line 413, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['pixi', 'run', '--frozen', 'sh', '-c', 'timeout -k 10 5400 python3.11 -m brainvisa.tests.test_morphologist --no-ann --test_mode=run']' returned non-zero exit status 1.
================================================================================
FAILED with exit code 1
================================================================================
----------------------------------------
$ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake/bin/bv_run_pixi_env.py run name=brainvisa-sf-6.0_user env=BRAINVISA_TEST_RUN_DATA_DIR=/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test,BRAINVISA_TEST_REF_DATA_DIR=/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/ref -- sh -c 'timeout -k 10 5400 python3.11 -m morphologist.tests.test_morphologist_capsul'
----------------------------------------
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/lib/python3.11/site-packages/morphologist/tests/test_morphologist_capsul.py']
Starting tests under /home_local/a-sac-ns-brainvisa/tmp/axon_test_u1u_ckhd
Loading toolbox baby
Loading toolbox bioprocessing
Loading toolbox brainrat
Loading toolbox constellation
Loading toolbox cortical_surface
Loading toolbox data management
Loading toolbox disco
Loading toolbox freesurfer
Loading toolbox highres_cortex
Loading toolbox morphologist
Loading toolbox nuclearimaging
Loading toolbox primatologist
Loading toolbox spm
Loading toolbox structural_analysis
Loading toolbox tools
Loading toolbox viewers
Loading toolbox My processes
The log file for this session is
'/home_local/a-sac-ns-brainvisa/tmp/axon_test_u1u_ckhd/bv_home/brainvisa.log'QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/home_local/a-sac-ns-brainvisa/tmp/axon_test_u1u_ckhd/tmp/runtime-a-sac-ns-brainvisa'
The XKEYBOARD keymap compiler (xkbcomp) reports:
> Warning: Could not resolve keysym XF86AudioPreset
> Warning: Could not resolve keysym XF86Keyboard
> Warning: Could not resolve keysym XF86MonBrightnessCycle
> Warning: Could not resolve keysym XF86BrightnessAuto
> Warning: Could not resolve keysym XF86DisplayOff
> Warning: Could not resolve keysym XF86WWAN
> Warning: Could not resolve keysym XF86RFKill
> Warning: Could not resolve keysym XF86Info
> Warning: Could not resolve keysym XF86FullScreen
> Warning: Could not resolve keysym XF86AspectRatio
> Warning: Could not resolve keysym XF86DVD
> Warning: Could not resolve keysym XF86Audio
> Warning: Could not resolve keysym XF86ChannelUp
> Warning: Could not resolve keysym XF86ChannelDown
> Warning: Could not resolve keysym XF86Break
> Warning: Could not resolve keysym XF86VideoPhone
> Warning: Could not resolve keysym XF86ZoomReset
> Warning: Could not resolve keysym XF86Editor
> Warning: Could not resolve keysym XF86GraphicsEditor
> Warning: Could not resolve keysym XF86Presentation
> Warning: Could not resolve keysym XF86Database
> Warning: Could not resolve keysym XF86Voicemail
> Warning: Could not resolve keysym XF86Addressbook
> Warning: Could not resolve keysym XF86DisplayToggle
> Warning: Could not resolve keysym XF86SpellCheck
> Warning: Could not resolve keysym XF86ContextMenu
> Warning: Could not resolve keysym XF86MediaRepeat
> Warning: Could not resolve keysym XF8610ChannelsUp
> Warning: Could not resolve keysym XF8610ChannelsDown
> Warning: Could not resolve keysym XF86Images
> Warning: Could not resolve keysym XF86NotificationCenter
> Warning: Could not resolve keysym XF86PickupPhone
> Warning: Could not resolve keysym XF86HangupPhone
> Warning: Could not resolve keysym XF86Fn
> Warning: Could not resolve keysym XF86Fn_Esc
> Warning: Could not resolve keysym XF86FnRightShift
> Warning: Could not resolve keysym XF86Numeric0
> Warning: Could not resolve keysym XF86Numeric1
> Warning: Could not resolve keysym XF86Numeric2
> Warning: Could not resolve keysym XF86Numeric3
> Warning: Could not resolve keysym XF86Numeric4
> Warning: Could not resolve keysym XF86Numeric5
> Warning: Could not resolve keysym XF86Numeric6
> Warning: Could not resolve keysym XF86Numeric7
> Warning: Could not resolve keysym XF86Numeric8
> Warning: Could not resolve keysym XF86Numeric9
> Warning: Could not resolve keysym XF86NumericStar
> Warning: Could not resolve keysym XF86NumericPound
> Warning: Could not resolve keysym XF86NumericA
> Warning: Could not resolve keysym XF86NumericB
> Warning: Could not resolve keysym XF86NumericC
> Warning: Could not resolve keysym XF86NumericD
> Warning: Could not resolve keysym XF86CameraFocus
> Warning: Could not resolve keysym XF86WPSButton
> Warning: Could not resolve keysym XF86CameraZoomIn
> Warning: Could not resolve keysym XF86CameraZoomOut
> Warning: Could not resolve keysym XF86CameraUp
> Warning: Could not resolve keysym XF86CameraDown
> Warning: Could not resolve keysym XF86CameraLeft
> Warning: Could not resolve keysym XF86CameraRight
> Warning: Could not resolve keysym XF86AttendantOn
> Warning: Could not resolve keysym XF86AttendantOff
> Warning: Could not resolve keysym XF86AttendantToggle
> Warning: Could not resolve keysym XF86LightsToggle
> Warning: Could not resolve keysym XF86ALSToggle
> Warning: Could not resolve keysym XF86RotationLockToggle
> Warning: Could not resolve keysym XF86Buttonconfig
> Warning: Could not resolve keysym XF86Taskmanager
> Warning: Could not resolve keysym XF86Journal
> Warning: Could not resolve keysym XF86ControlPanel
> Warning: Could not resolve keysym XF86AppSelect
> Warning: Could not resolve keysym XF86Screensaver
> Warning: Could not resolve keysym XF86VoiceCommand
> Warning: Could not resolve keysym XF86Assistant
> Warning: Could not resolve keysym XF86EmojiPicker
> Warning: Could not resolve keysym XF86Dictate
> Warning: Could not resolve keysym XF86CameraAccessEnable
> Warning: Could not resolve keysym XF86CameraAccessDisable
> Warning: Could not resolve keysym XF86CameraAccessToggle
> Warning: Could not resolve keysym XF86BrightnessMin
> Warning: Could not resolve keysym XF86BrightnessMax
> Warning: Could not resolve keysym XF86KbdInputAssistPrev
> Warning: Could not resolve keysym XF86KbdInputAssistNext
> Warning: Could not resolve keysym XF86KbdInputAssistPrevgroup
> Warning: Could not resolve keysym XF86KbdInputAssistNextgroup
> Warning: Could not resolve keysym XF86KbdInputAssistAccept
> Warning: Could not resolve keysym XF86KbdInputAssistCancel
> Warning: Could not resolve keysym XF86RightUp
> Warning: Could not resolve keysym XF86RightDown
> Warning: Could not resolve keysym XF86LeftUp
> Warning: Could not resolve keysym XF86LeftDown
> Warning: Could not resolve keysym XF86RootMenu
> Warning: Could not resolve keysym XF86MediaTopMenu
> Warning: Could not resolve keysym XF86Numeric11
> Warning: Could not resolve keysym XF86Numeric12
> Warning: Could not resolve keysym XF86AudioDesc
> Warning: Could not resolve keysym XF863DMode
> Warning: Could not resolve keysym XF86NextFavorite
> Warning: Could not resolve keysym XF86StopRecord
> Warning: Could not resolve keysym XF86PauseRecord
> Warning: Could not resolve keysym XF86VOD
> Warning: Could not resolve keysym XF86Unmute
> Warning: Could not resolve keysym XF86FastReverse
> Warning: Could not resolve keysym XF86SlowReverse
> Warning: Could not resolve keysym XF86Data
> Warning: Could not resolve keysym XF86OnScreenKeyboard
> Warning: Could not resolve keysym XF86PrivacyScreenToggle
> Warning: Could not resolve keysym XF86SelectiveScreenshot
> Warning: Could not resolve keysym XF86NextElement
> Warning: Could not resolve keysym XF86PreviousElement
> Warning: Could not resolve keysym XF86AutopilotEngageToggle
> Warning: Could not resolve keysym XF86MarkWaypoint
> Warning: Could not resolve keysym XF86Sos
> Warning: Could not resolve keysym XF86NavChart
> Warning: Could not resolve keysym XF86FishingChart
> Warning: Could not resolve keysym XF86SingleRangeRadar
> Warning: Could not resolve keysym XF86DualRangeRadar
> Warning: Could not resolve keysym XF86RadarOverlay
> Warning: Could not resolve keysym XF86TraditionalSonar
> Warning: Could not resolve keysym XF86ClearvuSonar
> Warning: Could not resolve keysym XF86SidevuSonar
> Warning: Could not resolve keysym XF86NavInfo
> Warning: Could not resolve keysym XF86Macro1
> Warning: Could not resolve keysym XF86Macro2
> Warning: Could not resolve keysym XF86Macro3
> Warning: Could not resolve keysym XF86Macro4
> Warning: Could not resolve keysym XF86Macro5
> Warning: Could not resolve keysym XF86Macro6
> Warning: Could not resolve keysym XF86Macro7
> Warning: Could not resolve keysym XF86Macro8
> Warning: Could not resolve keysym XF86Macro9
> Warning: Could not resolve keysym XF86Macro10
> Warning: Could not resolve keysym XF86Macro11
> Warning: Could not resolve keysym XF86Macro12
> Warning: Could not resolve keysym XF86Macro13
> Warning: Could not resolve keysym XF86Macro14
> Warning: Could not resolve keysym XF86Macro15
> Warning: Could not resolve keysym XF86Macro16
> Warning: Could not resolve keysym XF86Macro17
> Warning: Could not resolve keysym XF86Macro18
> Warning: Could not resolve keysym XF86Macro19
> Warning: Could not resolve keysym XF86Macro20
> Warning: Could not resolve keysym XF86Macro21
> Warning: Could not resolve keysym XF86Macro22
> Warning: Could not resolve keysym XF86Macro23
> Warning: Could not resolve keysym XF86Macro24
> Warning: Could not resolve keysym XF86Macro25
> Warning: Could not resolve keysym XF86Macro26
> Warning: Could not resolve keysym XF86Macro27
> Warning: Could not resolve keysym XF86Macro28
> Warning: Could not resolve keysym XF86Macro29
> Warning: Could not resolve keysym XF86Macro30
> Warning: Could not resolve keysym XF86MacroRecordStart
> Warning: Could not resolve keysym XF86MacroRecordStop
> Warning: Could not resolve keysym XF86MacroPresetCycle
> Warning: Could not resolve keysym XF86MacroPreset1
> Warning: Could not resolve keysym XF86MacroPreset2
> Warning: Could not resolve keysym XF86MacroPreset3
> Warning: Could not resolve keysym XF86KbdLcdMenu1
> Warning: Could not resolve keysym XF86KbdLcdMenu2
> Warning: Could not resolve keysym XF86KbdLcdMenu3
> Warning: Could not resolve keysym XF86KbdLcdMenu4
> Warning: Could not resolve keysym XF86KbdLcdMenu5
Errors from xkbcomp are not fatal to the X server
The XKEYBOARD keymap compiler (xkbcomp) reports:
> Warning: Could not resolve keysym XF86AudioPreset
> Warning: Could not resolve keysym XF86Keyboard
> Warning: Could not resolve keysym XF86MonBrightnessCycle
> Warning: Could not resolve keysym XF86BrightnessAuto
> Warning: Could not resolve keysym XF86DisplayOff
> Warning: Could not resolve keysym XF86WWAN
> Warning: Could not resolve keysym XF86RFKill
> Warning: Could not resolve keysym XF86Info
> Warning: Could not resolve keysym XF86FullScreen
> Warning: Could not resolve keysym XF86AspectRatio
> Warning: Could not resolve keysym XF86DVD
> Warning: Could not resolve keysym XF86Audio
> Warning: Could not resolve keysym XF86ChannelUp
> Warning: Could not resolve keysym XF86ChannelDown
> Warning: Could not resolve keysym XF86Break
> Warning: Could not resolve keysym XF86VideoPhone
> Warning: Could not resolve keysym XF86ZoomReset
> Warning: Could not resolve keysym XF86Editor
> Warning: Could not resolve keysym XF86GraphicsEditor
> Warning: Could not resolve keysym XF86Presentation
> Warning: Could not resolve keysym XF86Database
> Warning: Could not resolve keysym XF86Voicemail
> Warning: Could not resolve keysym XF86Addressbook
> Warning: Could not resolve keysym XF86DisplayToggle
> Warning: Could not resolve keysym XF86SpellCheck
> Warning: Could not resolve keysym XF86ContextMenu
> Warning: Could not resolve keysym XF86MediaRepeat
> Warning: Could not resolve keysym XF8610ChannelsUp
> Warning: Could not resolve keysym XF8610ChannelsDown
> Warning: Could not resolve keysym XF86Images
> Warning: Could not resolve keysym XF86NotificationCenter
> Warning: Could not resolve keysym XF86PickupPhone
> Warning: Could not resolve keysym XF86HangupPhone
> Warning: Could not resolve keysym XF86Fn
> Warning: Could not resolve keysym XF86Fn_Esc
> Warning: Could not resolve keysym XF86FnRightShift
> Warning: Could not resolve keysym XF86Numeric0
> Warning: Could not resolve keysym XF86Numeric1
> Warning: Could not resolve keysym XF86Numeric2
> Warning: Could not resolve keysym XF86Numeric3
> Warning: Could not resolve keysym XF86Numeric4
> Warning: Could not resolve keysym XF86Numeric5
> Warning: Could not resolve keysym XF86Numeric6
> Warning: Could not resolve keysym XF86Numeric7
> Warning: Could not resolve keysym XF86Numeric8
> Warning: Could not resolve keysym XF86Numeric9
> Warning: Could not resolve keysym XF86NumericStar
> Warning: Could not resolve keysym XF86NumericPound
> Warning: Could not resolve keysym XF86NumericA
> Warning: Could not resolve keysym XF86NumericB
> Warning: Could not resolve keysym XF86NumericC
> Warning: Could not resolve keysym XF86NumericD
> Warning: Could not resolve keysym XF86CameraFocus
> Warning: Could not resolve keysym XF86WPSButton
> Warning: Could not resolve keysym XF86CameraZoomIn
> Warning: Could not resolve keysym XF86CameraZoomOut
> Warning: Could not resolve keysym XF86CameraUp
> Warning: Could not resolve keysym XF86CameraDown
> Warning: Could not resolve keysym XF86CameraLeft
> Warning: Could not resolve keysym XF86CameraRight
> Warning: Could not resolve keysym XF86AttendantOn
> Warning: Could not resolve keysym XF86AttendantOff
> Warning: Could not resolve keysym XF86AttendantToggle
> Warning: Could not resolve keysym XF86LightsToggle
> Warning: Could not resolve keysym XF86ALSToggle
> Warning: Could not resolve keysym XF86RotationLockToggle
> Warning: Could not resolve keysym XF86Buttonconfig
> Warning: Could not resolve keysym XF86Taskmanager
> Warning: Could not resolve keysym XF86Journal
> Warning: Could not resolve keysym XF86ControlPanel
> Warning: Could not resolve keysym XF86AppSelect
> Warning: Could not resolve keysym XF86Screensaver
> Warning: Could not resolve keysym XF86VoiceCommand
> Warning: Could not resolve keysym XF86Assistant
> Warning: Could not resolve keysym XF86EmojiPicker
> Warning: Could not resolve keysym XF86Dictate
> Warning: Could not resolve keysym XF86CameraAccessEnable
> Warning: Could not resolve keysym XF86CameraAccessDisable
> Warning: Could not resolve keysym XF86CameraAccessToggle
> Warning: Could not resolve keysym XF86BrightnessMin
> Warning: Could not resolve keysym XF86BrightnessMax
> Warning: Could not resolve keysym XF86KbdInputAssistPrev
> Warning: Could not resolve keysym XF86KbdInputAssistNext
> Warning: Could not resolve keysym XF86KbdInputAssistPrevgroup
> Warning: Could not resolve keysym XF86KbdInputAssistNextgroup
> Warning: Could not resolve keysym XF86KbdInputAssistAccept
> Warning: Could not resolve keysym XF86KbdInputAssistCancel
> Warning: Could not resolve keysym XF86RightUp
> Warning: Could not resolve keysym XF86RightDown
> Warning: Could not resolve keysym XF86LeftUp
> Warning: Could not resolve keysym XF86LeftDown
> Warning: Could not resolve keysym XF86RootMenu
> Warning: Could not resolve keysym XF86MediaTopMenu
> Warning: Could not resolve keysym XF86Numeric11
> Warning: Could not resolve keysym XF86Numeric12
> Warning: Could not resolve keysym XF86AudioDesc
> Warning: Could not resolve keysym XF863DMode
> Warning: Could not resolve keysym XF86NextFavorite
> Warning: Could not resolve keysym XF86StopRecord
> Warning: Could not resolve keysym XF86PauseRecord
> Warning: Could not resolve keysym XF86VOD
> Warning: Could not resolve keysym XF86Unmute
> Warning: Could not resolve keysym XF86FastReverse
> Warning: Could not resolve keysym XF86SlowReverse
> Warning: Could not resolve keysym XF86Data
> Warning: Could not resolve keysym XF86OnScreenKeyboard
> Warning: Could not resolve keysym XF86PrivacyScreenToggle
> Warning: Could not resolve keysym XF86SelectiveScreenshot
> Warning: Could not resolve keysym XF86NextElement
> Warning: Could not resolve keysym XF86PreviousElement
> Warning: Could not resolve keysym XF86AutopilotEngageToggle
> Warning: Could not resolve keysym XF86MarkWaypoint
> Warning: Could not resolve keysym XF86Sos
> Warning: Could not resolve keysym XF86NavChart
> Warning: Could not resolve keysym XF86FishingChart
> Warning: Could not resolve keysym XF86SingleRangeRadar
> Warning: Could not resolve keysym XF86DualRangeRadar
> Warning: Could not resolve keysym XF86RadarOverlay
> Warning: Could not resolve keysym XF86TraditionalSonar
> Warning: Could not resolve keysym XF86ClearvuSonar
> Warning: Could not resolve keysym XF86SidevuSonar
> Warning: Could not resolve keysym XF86NavInfo
> Warning: Could not resolve keysym XF86Macro1
> Warning: Could not resolve keysym XF86Macro2
> Warning: Could not resolve keysym XF86Macro3
> Warning: Could not resolve keysym XF86Macro4
> Warning: Could not resolve keysym XF86Macro5
> Warning: Could not resolve keysym XF86Macro6
> Warning: Could not resolve keysym XF86Macro7
> Warning: Could not resolve keysym XF86Macro8
> Warning: Could not resolve keysym XF86Macro9
> Warning: Could not resolve keysym XF86Macro10
> Warning: Could not resolve keysym XF86Macro11
> Warning: Could not resolve keysym XF86Macro12
> Warning: Could not resolve keysym XF86Macro13
> Warning: Could not resolve keysym XF86Macro14
> Warning: Could not resolve keysym XF86Macro15
> Warning: Could not resolve keysym XF86Macro16
> Warning: Could not resolve keysym XF86Macro17
> Warning: Could not resolve keysym XF86Macro18
> Warning: Could not resolve keysym XF86Macro19
> Warning: Could not resolve keysym XF86Macro20
> Warning: Could not resolve keysym XF86Macro21
> Warning: Could not resolve keysym XF86Macro22
> Warning: Could not resolve keysym XF86Macro23
> Warning: Could not resolve keysym XF86Macro24
> Warning: Could not resolve keysym XF86Macro25
> Warning: Could not resolve keysym XF86Macro26
> Warning: Could not resolve keysym XF86Macro27
> Warning: Could not resolve keysym XF86Macro28
> Warning: Could not resolve keysym XF86Macro29
> Warning: Could not resolve keysym XF86Macro30
> Warning: Could not resolve keysym XF86MacroRecordStart
> Warning: Could not resolve keysym XF86MacroRecordStop
> Warning: Could not resolve keysym XF86MacroPresetCycle
> Warning: Could not resolve keysym XF86MacroPreset1
> Warning: Could not resolve keysym XF86MacroPreset2
> Warning: Could not resolve keysym XF86MacroPreset3
> Warning: Could not resolve keysym XF86KbdLcdMenu1
> Warning: Could not resolve keysym XF86KbdLcdMenu2
> Warning: Could not resolve keysym XF86KbdLcdMenu3
> Warning: Could not resolve keysym XF86KbdLcdMenu4
> Warning: Could not resolve keysym XF86KbdLcdMenu5
Errors from xkbcomp are not fatal to the X server
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/home_local/a-sac-ns-brainvisa/tmp/axon_test_u1u_ckhd/tmp/runtime-a-sac-ns-brainvisa'
Qt WebEngine seems to be initialized from a plugin. Please set Qt::AA_ShareOpenGLContexts using QCoreApplication::setAttribute before constructing QGuiApplication.
The XKEYBOARD keymap compiler (xkbcomp) reports:
> Warning: Could not resolve keysym XF86AudioPreset
> Warning: Could not resolve keysym XF86Keyboard
> Warning: Could not resolve keysym XF86MonBrightnessCycle
> Warning: Could not resolve keysym XF86BrightnessAuto
> Warning: Could not resolve keysym XF86DisplayOff
> Warning: Could not resolve keysym XF86WWAN
> Warning: Could not resolve keysym XF86RFKill
> Warning: Could not resolve keysym XF86Info
> Warning: Could not resolve keysym XF86FullScreen
> Warning: Could not resolve keysym XF86AspectRatio
> Warning: Could not resolve keysym XF86DVD
> Warning: Could not resolve keysym XF86Audio
> Warning: Could not resolve keysym XF86ChannelUp
> Warning: Could not resolve keysym XF86ChannelDown
> Warning: Could not resolve keysym XF86Break
> Warning: Could not resolve keysym XF86VideoPhone
> Warning: Could not resolve keysym XF86ZoomReset
> Warning: Could not resolve keysym XF86Editor
> Warning: Could not resolve keysym XF86GraphicsEditor
> Warning: Could not resolve keysym XF86Presentation
> Warning: Could not resolve keysym XF86Database
> Warning: Could not resolve keysym XF86Voicemail
> Warning: Could not resolve keysym XF86Addressbook
> Warning: Could not resolve keysym XF86DisplayToggle
> Warning: Could not resolve keysym XF86SpellCheck
> Warning: Could not resolve keysym XF86ContextMenu
> Warning: Could not resolve keysym XF86MediaRepeat
> Warning: Could not resolve keysym XF8610ChannelsUp
> Warning: Could not resolve keysym XF8610ChannelsDown
> Warning: Could not resolve keysym XF86Images
> Warning: Could not resolve keysym XF86NotificationCenter
> Warning: Could not resolve keysym XF86PickupPhone
> Warning: Could not resolve keysym XF86HangupPhone
> Warning: Could not resolve keysym XF86Fn
> Warning: Could not resolve keysym XF86Fn_Esc
> Warning: Could not resolve keysym XF86FnRightShift
> Warning: Could not resolve keysym XF86Numeric0
> Warning: Could not resolve keysym XF86Numeric1
> Warning: Could not resolve keysym XF86Numeric2
> Warning: Could not resolve keysym XF86Numeric3
> Warning: Could not resolve keysym XF86Numeric4
> Warning: Could not resolve keysym XF86Numeric5
> Warning: Could not resolve keysym XF86Numeric6
> Warning: Could not resolve keysym XF86Numeric7
> Warning: Could not resolve keysym XF86Numeric8
> Warning: Could not resolve keysym XF86Numeric9
> Warning: Could not resolve keysym XF86NumericStar
> Warning: Could not resolve keysym XF86NumericPound
> Warning: Could not resolve keysym XF86NumericA
> Warning: Could not resolve keysym XF86NumericB
> Warning: Could not resolve keysym XF86NumericC
> Warning: Could not resolve keysym XF86NumericD
> Warning: Could not resolve keysym XF86CameraFocus
> Warning: Could not resolve keysym XF86WPSButton
> Warning: Could not resolve keysym XF86CameraZoomIn
> Warning: Could not resolve keysym XF86CameraZoomOut
> Warning: Could not resolve keysym XF86CameraUp
> Warning: Could not resolve keysym XF86CameraDown
> Warning: Could not resolve keysym XF86CameraLeft
> Warning: Could not resolve keysym XF86CameraRight
> Warning: Could not resolve keysym XF86AttendantOn
> Warning: Could not resolve keysym XF86AttendantOff
> Warning: Could not resolve keysym XF86AttendantToggle
> Warning: Could not resolve keysym XF86LightsToggle
> Warning: Could not resolve keysym XF86ALSToggle
> Warning: Could not resolve keysym XF86RotationLockToggle
> Warning: Could not resolve keysym XF86Buttonconfig
> Warning: Could not resolve keysym XF86Taskmanager
> Warning: Could not resolve keysym XF86Journal
> Warning: Could not resolve keysym XF86ControlPanel
> Warning: Could not resolve keysym XF86AppSelect
> Warning: Could not resolve keysym XF86Screensaver
> Warning: Could not resolve keysym XF86VoiceCommand
> Warning: Could not resolve keysym XF86Assistant
> Warning: Could not resolve keysym XF86EmojiPicker
> Warning: Could not resolve keysym XF86Dictate
> Warning: Could not resolve keysym XF86CameraAccessEnable
> Warning: Could not resolve keysym XF86CameraAccessDisable
> Warning: Could not resolve keysym XF86CameraAccessToggle
> Warning: Could not resolve keysym XF86BrightnessMin
> Warning: Could not resolve keysym XF86BrightnessMax
> Warning: Could not resolve keysym XF86KbdInputAssistPrev
> Warning: Could not resolve keysym XF86KbdInputAssistNext
> Warning: Could not resolve keysym XF86KbdInputAssistPrevgroup
> Warning: Could not resolve keysym XF86KbdInputAssistNextgroup
> Warning: Could not resolve keysym XF86KbdInputAssistAccept
> Warning: Could not resolve keysym XF86KbdInputAssistCancel
> Warning: Could not resolve keysym XF86RightUp
> Warning: Could not resolve keysym XF86RightDown
> Warning: Could not resolve keysym XF86LeftUp
> Warning: Could not resolve keysym XF86LeftDown
> Warning: Could not resolve keysym XF86RootMenu
> Warning: Could not resolve keysym XF86MediaTopMenu
> Warning: Could not resolve keysym XF86Numeric11
> Warning: Could not resolve keysym XF86Numeric12
> Warning: Could not resolve keysym XF86AudioDesc
> Warning: Could not resolve keysym XF863DMode
> Warning: Could not resolve keysym XF86NextFavorite
> Warning: Could not resolve keysym XF86StopRecord
> Warning: Could not resolve keysym XF86PauseRecord
> Warning: Could not resolve keysym XF86VOD
> Warning: Could not resolve keysym XF86Unmute
> Warning: Could not resolve keysym XF86FastReverse
> Warning: Could not resolve keysym XF86SlowReverse
> Warning: Could not resolve keysym XF86Data
> Warning: Could not resolve keysym XF86OnScreenKeyboard
> Warning: Could not resolve keysym XF86PrivacyScreenToggle
> Warning: Could not resolve keysym XF86SelectiveScreenshot
> Warning: Could not resolve keysym XF86NextElement
> Warning: Could not resolve keysym XF86PreviousElement
> Warning: Could not resolve keysym XF86AutopilotEngageToggle
> Warning: Could not resolve keysym XF86MarkWaypoint
> Warning: Could not resolve keysym XF86Sos
> Warning: Could not resolve keysym XF86NavChart
> Warning: Could not resolve keysym XF86FishingChart
> Warning: Could not resolve keysym XF86SingleRangeRadar
> Warning: Could not resolve keysym XF86DualRangeRadar
> Warning: Could not resolve keysym XF86RadarOverlay
> Warning: Could not resolve keysym XF86TraditionalSonar
> Warning: Could not resolve keysym XF86ClearvuSonar
> Warning: Could not resolve keysym XF86SidevuSonar
> Warning: Could not resolve keysym XF86NavInfo
> Warning: Could not resolve keysym XF86Macro1
> Warning: Could not resolve keysym XF86Macro2
> Warning: Could not resolve keysym XF86Macro3
> Warning: Could not resolve keysym XF86Macro4
> Warning: Could not resolve keysym XF86Macro5
> Warning: Could not resolve keysym XF86Macro6
> Warning: Could not resolve keysym XF86Macro7
> Warning: Could not resolve keysym XF86Macro8
> Warning: Could not resolve keysym XF86Macro9
> Warning: Could not resolve keysym XF86Macro10
> Warning: Could not resolve keysym XF86Macro11
> Warning: Could not resolve keysym XF86Macro12
> Warning: Could not resolve keysym XF86Macro13
> Warning: Could not resolve keysym XF86Macro14
> Warning: Could not resolve keysym XF86Macro15
> Warning: Could not resolve keysym XF86Macro16
> Warning: Could not resolve keysym XF86Macro17
> Warning: Could not resolve keysym XF86Macro18
> Warning: Could not resolve keysym XF86Macro19
> Warning: Could not resolve keysym XF86Macro20
> Warning: Could not resolve keysym XF86Macro21
> Warning: Could not resolve keysym XF86Macro22
> Warning: Could not resolve keysym XF86Macro23
> Warning: Could not resolve keysym XF86Macro24
> Warning: Could not resolve keysym XF86Macro25
> Warning: Could not resolve keysym XF86Macro26
> Warning: Could not resolve keysym XF86Macro27
> Warning: Could not resolve keysym XF86Macro28
> Warning: Could not resolve keysym XF86Macro29
> Warning: Could not resolve keysym XF86Macro30
> Warning: Could not resolve keysym XF86MacroRecordStart
> Warning: Could not resolve keysym XF86MacroRecordStop
> Warning: Could not resolve keysym XF86MacroPresetCycle
> Warning: Could not resolve keysym XF86MacroPreset1
> Warning: Could not resolve keysym XF86MacroPreset2
> Warning: Could not resolve keysym XF86MacroPreset3
> Warning: Could not resolve keysym XF86KbdLcdMenu1
> Warning: Could not resolve keysym XF86KbdLcdMenu2
> Warning: Could not resolve keysym XF86KbdLcdMenu3
> Warning: Could not resolve keysym XF86KbdLcdMenu4
> Warning: Could not resolve keysym XF86KbdLcdMenu5
Errors from xkbcomp are not fatal to the X server
Attribute Qt::AA_ShareOpenGLContexts must be set before QCoreApplication is created.
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/home_local/a-sac-ns-brainvisa/tmp/axon_test_u1u_ckhd/tmp/runtime-a-sac-ns-brainvisa'
Qt offscreen does not work.
Cannot allocate an OpenGL context. Using Xvfb if possible.
using DISPLAY=:1
VirtualGL found.
exec: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/lib/python3.11/site-packages/brainvisa/toolboxes/constellation/startup.py
Database
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/share/constellation-5.2/constellation_atlas_hcp_200s/constellation_matrix
must be updated because the database file is too old.Database
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/share/constellation-5.2/constellation_atlas_hcp_200s/freesurfer_gyri
must be updated because the database file is too old.exec: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/lib/python3.11/site-packages/brainvisa/toolboxes/disco/startup.py
exec: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/lib/python3.11/site-packages/brainvisa/toolboxes/morphologist/startup.py
SPM dir: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/spm12/spm12_mcr/spm/spm12
spmtemplates: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/spm12/spm12_mcr/spm/spm12
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/spm12/spm12_mcr/spm/spm12:
parse directories and insert items/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/spm12/spm12_mcr/spm/spm12:
8 files are stored as 8 DiskItems in 0 secondsGenerating database tables for
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/share/brainvisa-share-5.2/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/share/brainvisa-share-5.2:
parse directories and insert items/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/share/brainvisa-share-5.2:
197 files are stored as 184 DiskItems in 0 secondstest_pipeline_results (__main__.TestMorphologistCapsul.test_pipeline_results) ... * Check SPAM models installation
Process Check SPAM models installation started on 2025/11/01 04:47models: 6SPAM models are present.Process Check SPAM models installation finished on 2025/11/01 04:47 (0 seconds)* Create test database
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/db_morphologist:
parse directories and insert items/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/db_morphologist:
2 files are stored as 2 DiskItems in 0 secondsGenerating database tables for
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/db_morphologist/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/db_morphologist:
parse directories and insert items/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/db_morphologist:
2 files are stored as 2 DiskItems in 0 secondsdownload dir: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/share/brainvisa_demo
install dir: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul
already downloaded, skipping download.
installing demo_data.zip ...
* Import test data
Process Import T1 MRI started on 2025/11/01 04:47filein : /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/data_unprocessed/sujet01/anatomy/sujet01.ima
fileout : /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/db_morphologist/test/sujet01/t1mri/default_acquisition/sujet01.nii
encoding: Binary
normal : 0
rescale : 0
format :
type : S16
objtype :
xdim : 0
ydim : 0
zdim : 0
imin : default
imax : default
omin : default
omax : default
reading /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/data_unprocessed/sujet01/anatomy/sujet01.ima as Volume / S16...
reading done
convert to Volume / S16
converting data...
convert done
writing /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/db_morphologist/test/sujet01/t1mri/default_acquisition/sujet01.nii...
done
Process Import T1 MRI finished on 2025/11/01 04:47 (1 seconds)* create process
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
* Run Morphologist_Capsul to get test results
Process Morphologist CAPSUL iteration started on 2025/11/01 04:47Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
progress: 0.0 % ...Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
progress: 100.0 % ...jobs: 28 real, 28 total including barriersProcess Morphologist CAPSUL iteration finished on 2025/11/01 04:47 (2 seconds)workflow: /home_local/a-sac-ns-brainvisa/tmp/axon_test_u1u_ckhd/tmp/bv_4ud63f8i.workflow
soma-workflow starting in light mode
** Workflow status OK
Workflow controller initialised
* running Morphologist...
* finished.
* Run Morphologist_Capsul CNN sulci recognition
Process Morphologist CAPSUL iteration started on 2025/11/01 04:55progress: 0.0 % ...progress: 100.0 % ...jobs: 6 real, 6 total including barriersProcess Morphologist CAPSUL iteration finished on 2025/11/01 04:55 (0 seconds)** Workflow status OK
FAIL
workflow: /home_local/a-sac-ns-brainvisa/tmp/axon_test_u1u_ckhd/tmp/bv_4ud63f8i.workflow
* running CNN...
* finished.
** No failed jobs.
del WorkflowController
======================================================================
FAIL: test_pipeline_results (__main__.TestMorphologistCapsul.test_pipeline_results)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/lib/python3.11/site-packages/morphologist/tests/test_morphologist_capsul.py", line 358, in test_pipeline_results
self.assertTrue(
AssertionError: False is not true : The content of /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/test/test_morphologist_capsul/db_morphologist/test/sujet01/t1mri/default_acquisition/capsul/segmentation/brain_volumes_sujet01.csv in test is different from the reference results /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/tests/ref/test_morphologist_pipeline/db_morphologist/test/sujet01/t1mri/default_acquisition/default_analysis/segmentation/brain_volumes_sujet01.csv.
----------------------------------------------------------------------
Ran 1 test in 579.185s
FAILED (failures=1)
RETURNCODE: False
The XKEYBOARD keymap compiler (xkbcomp) reports:
> Warning: Could not resolve keysym XF86AudioPreset
> Warning: Could not resolve keysym XF86Keyboard
> Warning: Could not resolve keysym XF86MonBrightnessCycle
> Warning: Could not resolve keysym XF86BrightnessAuto
> Warning: Could not resolve keysym XF86DisplayOff
> Warning: Could not resolve keysym XF86WWAN
> Warning: Could not resolve keysym XF86RFKill
> Warning: Could not resolve keysym XF86Info
> Warning: Could not resolve keysym XF86FullScreen
> Warning: Could not resolve keysym XF86AspectRatio
> Warning: Could not resolve keysym XF86DVD
> Warning: Could not resolve keysym XF86Audio
> Warning: Could not resolve keysym XF86ChannelUp
> Warning: Could not resolve keysym XF86ChannelDown
> Warning: Could not resolve keysym XF86Break
> Warning: Could not resolve keysym XF86VideoPhone
> Warning: Could not resolve keysym XF86ZoomReset
> Warning: Could not resolve keysym XF86Editor
> Warning: Could not resolve keysym XF86GraphicsEditor
> Warning: Could not resolve keysym XF86Presentation
> Warning: Could not resolve keysym XF86Database
> Warning: Could not resolve keysym XF86Voicemail
> Warning: Could not resolve keysym XF86Addressbook
> Warning: Could not resolve keysym XF86DisplayToggle
> Warning: Could not resolve keysym XF86SpellCheck
> Warning: Could not resolve keysym XF86ContextMenu
> Warning: Could not resolve keysym XF86MediaRepeat
> Warning: Could not resolve keysym XF8610ChannelsUp
> Warning: Could not resolve keysym XF8610ChannelsDown
> Warning: Could not resolve keysym XF86Images
> Warning: Could not resolve keysym XF86NotificationCenter
> Warning: Could not resolve keysym XF86PickupPhone
> Warning: Could not resolve keysym XF86HangupPhone
> Warning: Could not resolve keysym XF86Fn
> Warning: Could not resolve keysym XF86Fn_Esc
> Warning: Could not resolve keysym XF86FnRightShift
> Warning: Could not resolve keysym XF86Numeric0
> Warning: Could not resolve keysym XF86Numeric1
> Warning: Could not resolve keysym XF86Numeric2
> Warning: Could not resolve keysym XF86Numeric3
> Warning: Could not resolve keysym XF86Numeric4
> Warning: Could not resolve keysym XF86Numeric5
> Warning: Could not resolve keysym XF86Numeric6
> Warning: Could not resolve keysym XF86Numeric7
> Warning: Could not resolve keysym XF86Numeric8
> Warning: Could not resolve keysym XF86Numeric9
> Warning: Could not resolve keysym XF86NumericStar
> Warning: Could not resolve keysym XF86NumericPound
> Warning: Could not resolve keysym XF86NumericA
> Warning: Could not resolve keysym XF86NumericB
> Warning: Could not resolve keysym XF86NumericC
> Warning: Could not resolve keysym XF86NumericD
> Warning: Could not resolve keysym XF86CameraFocus
> Warning: Could not resolve keysym XF86WPSButton
> Warning: Could not resolve keysym XF86CameraZoomIn
> Warning: Could not resolve keysym XF86CameraZoomOut
> Warning: Could not resolve keysym XF86CameraUp
> Warning: Could not resolve keysym XF86CameraDown
> Warning: Could not resolve keysym XF86CameraLeft
> Warning: Could not resolve keysym XF86CameraRight
> Warning: Could not resolve keysym XF86AttendantOn
> Warning: Could not resolve keysym XF86AttendantOff
> Warning: Could not resolve keysym XF86AttendantToggle
> Warning: Could not resolve keysym XF86LightsToggle
> Warning: Could not resolve keysym XF86ALSToggle
> Warning: Could not resolve keysym XF86RotationLockToggle
> Warning: Could not resolve keysym XF86Buttonconfig
> Warning: Could not resolve keysym XF86Taskmanager
> Warning: Could not resolve keysym XF86Journal
> Warning: Could not resolve keysym XF86ControlPanel
> Warning: Could not resolve keysym XF86AppSelect
> Warning: Could not resolve keysym XF86Screensaver
> Warning: Could not resolve keysym XF86VoiceCommand
> Warning: Could not resolve keysym XF86Assistant
> Warning: Could not resolve keysym XF86EmojiPicker
> Warning: Could not resolve keysym XF86Dictate
> Warning: Could not resolve keysym XF86CameraAccessEnable
> Warning: Could not resolve keysym XF86CameraAccessDisable
> Warning: Could not resolve keysym XF86CameraAccessToggle
> Warning: Could not resolve keysym XF86BrightnessMin
> Warning: Could not resolve keysym XF86BrightnessMax
> Warning: Could not resolve keysym XF86KbdInputAssistPrev
> Warning: Could not resolve keysym XF86KbdInputAssistNext
> Warning: Could not resolve keysym XF86KbdInputAssistPrevgroup
> Warning: Could not resolve keysym XF86KbdInputAssistNextgroup
> Warning: Could not resolve keysym XF86KbdInputAssistAccept
> Warning: Could not resolve keysym XF86KbdInputAssistCancel
> Warning: Could not resolve keysym XF86RightUp
> Warning: Could not resolve keysym XF86RightDown
> Warning: Could not resolve keysym XF86LeftUp
> Warning: Could not resolve keysym XF86LeftDown
> Warning: Could not resolve keysym XF86RootMenu
> Warning: Could not resolve keysym XF86MediaTopMenu
> Warning: Could not resolve keysym XF86Numeric11
> Warning: Could not resolve keysym XF86Numeric12
> Warning: Could not resolve keysym XF86AudioDesc
> Warning: Could not resolve keysym XF863DMode
> Warning: Could not resolve keysym XF86NextFavorite
> Warning: Could not resolve keysym XF86StopRecord
> Warning: Could not resolve keysym XF86PauseRecord
> Warning: Could not resolve keysym XF86VOD
> Warning: Could not resolve keysym XF86Unmute
> Warning: Could not resolve keysym XF86FastReverse
> Warning: Could not resolve keysym XF86SlowReverse
> Warning: Could not resolve keysym XF86Data
> Warning: Could not resolve keysym XF86OnScreenKeyboard
> Warning: Could not resolve keysym XF86PrivacyScreenToggle
> Warning: Could not resolve keysym XF86SelectiveScreenshot
> Warning: Could not resolve keysym XF86NextElement
> Warning: Could not resolve keysym XF86PreviousElement
> Warning: Could not resolve keysym XF86AutopilotEngageToggle
> Warning: Could not resolve keysym XF86MarkWaypoint
> Warning: Could not resolve keysym XF86Sos
> Warning: Could not resolve keysym XF86NavChart
> Warning: Could not resolve keysym XF86FishingChart
> Warning: Could not resolve keysym XF86SingleRangeRadar
> Warning: Could not resolve keysym XF86DualRangeRadar
> Warning: Could not resolve keysym XF86RadarOverlay
> Warning: Could not resolve keysym XF86TraditionalSonar
> Warning: Could not resolve keysym XF86ClearvuSonar
> Warning: Could not resolve keysym XF86SidevuSonar
> Warning: Could not resolve keysym XF86NavInfo
> Warning: Could not resolve keysym XF86Macro1
> Warning: Could not resolve keysym XF86Macro2
> Warning: Could not resolve keysym XF86Macro3
> Warning: Could not resolve keysym XF86Macro4
> Warning: Could not resolve keysym XF86Macro5
> Warning: Could not resolve keysym XF86Macro6
> Warning: Could not resolve keysym XF86Macro7
> Warning: Could not resolve keysym XF86Macro8
> Warning: Could not resolve keysym XF86Macro9
> Warning: Could not resolve keysym XF86Macro10
> Warning: Could not resolve keysym XF86Macro11
> Warning: Could not resolve keysym XF86Macro12
> Warning: Could not resolve keysym XF86Macro13
> Warning: Could not resolve keysym XF86Macro14
> Warning: Could not resolve keysym XF86Macro15
> Warning: Could not resolve keysym XF86Macro16
> Warning: Could not resolve keysym XF86Macro17
> Warning: Could not resolve keysym XF86Macro18
> Warning: Could not resolve keysym XF86Macro19
> Warning: Could not resolve keysym XF86Macro20
> Warning: Could not resolve keysym XF86Macro21
> Warning: Could not resolve keysym XF86Macro22
> Warning: Could not resolve keysym XF86Macro23
> Warning: Could not resolve keysym XF86Macro24
> Warning: Could not resolve keysym XF86Macro25
> Warning: Could not resolve keysym XF86Macro26
> Warning: Could not resolve keysym XF86Macro27
> Warning: Could not resolve keysym XF86Macro28
> Warning: Could not resolve keysym XF86Macro29
> Warning: Could not resolve keysym XF86Macro30
> Warning: Could not resolve keysym XF86MacroRecordStart
> Warning: Could not resolve keysym XF86MacroRecordStop
> Warning: Could not resolve keysym XF86MacroPresetCycle
> Warning: Could not resolve keysym XF86MacroPreset1
> Warning: Could not resolve keysym XF86MacroPreset2
> Warning: Could not resolve keysym XF86MacroPreset3
> Warning: Could not resolve keysym XF86KbdLcdMenu1
> Warning: Could not resolve keysym XF86KbdLcdMenu2
> Warning: Could not resolve keysym XF86KbdLcdMenu3
> Warning: Could not resolve keysym XF86KbdLcdMenu4
> Warning: Could not resolve keysym XF86KbdLcdMenu5
Errors from xkbcomp are not fatal to the X server
Exception ignored in: <function TemporaryDirectory.__del__ at 0x780aa0db6660>
Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0_user/.pixi/envs/default/lib/python3.11/site-packages/brainvisa/data/neuroDiskItems.py", line 2669, in __del__
TypeError: 'NoneType' object is not callable
Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake/bin/bv_run_pixi_env.py", line 75, in <module>
subprocess.check_call(cmd, cwd=wd, env=env)
File "/usr/lib/python3.12/subprocess.py", line 413, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['pixi', 'run', '--frozen', 'sh', '-c', 'timeout -k 10 5400 python3.11 -m morphologist.tests.test_morphologist_capsul']' returned non-zero exit status 1.
================================================================================
FAILED with exit code 1
Finished: FAILURE
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