Started
Running as brainvisa
----------------------------------------
$ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin/casa_distro bv_maker name=cea-5.1-5.3 -- sources
----------------------------------------
$ svn cleanup /casa/host/src
$ svn propset svn:externals --file /casa/host/src/bv_maker.externals /casa/host/src
property 'svn:externals' set on '.'
$ svn commit -m '' /casa/host/src
$ svn update /casa/host/src
Updating '.':
At revision 1.
Updating git repository /casa/host/src/aims/aims-free/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/aims/aims-gpl/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/anatomist/anatomist-free/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/anatomist-free
eb1eed71..40987e03 master -> origin/master
9cebab62..45dce5e0 soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/anatomist/anatomist-gpl/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/anatomist-gpl
f719dd1..d3663a1 master -> origin/master
f719dd1..d3663a1 soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/axon/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/axon
a3d2bd38..d46d8795 capsul3 -> origin/capsul3
b5dd9aa4..d2865cc4 master -> origin/master
b5dd9aa4..c095f412 soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/bioprocessing/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
From https://bioproj.extra.cea.fr/git/bioprocessing
6e03999..47145d2 master -> origin/master
cd93edb..5e792cc soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/brainrat-gpl/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/brainrat-private/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
From https://bioproj.extra.cea.fr/git/brainrat-private
e9670b4..20f9016 master -> origin/master
dfe33cb..bdc7ecc soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/primatologist-gpl/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
From https://bioproj.extra.cea.fr/git/primatologist-gpl
8e590b0..337168a soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainvisa-share/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainvisa-spm/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/brainvisa-spm
273f2ca..e77cda3 master -> origin/master
6645742..aea93ed soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/capsul/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/populse/capsul
202acf08..9ee73bad gh-pages -> origin/gh-pages
3e888b11..168f4a3c master -> origin/master
21157d9d..74e1ec4d soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/brainvisa-5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/constellation/constellation-gpl/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/constellation-gpl
ea5df9f..5bb66e6 master -> origin/master
19a0e51..d2925bb soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/constellation/constellation-nonfree/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/brainvisa_freesurfer/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/brainvisa_freesurfer
a40875d..80716f7 master -> origin/master
7b11ac3..ede7efd soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/cortical_surface-gpl/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/cortical_surface-gpl
04f5e7e..0ac8a75 master -> origin/master
1894cf3..7623124 soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/cortical_surface-nonfree/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/development/brainvisa-cmake/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/brainvisa-cmake
679f6b1..c924c10 master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/development/casa-distro/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/casa-distro
d76dac8..e33367f gh-pages -> origin/gh-pages
69ef51d..d0e4e2e master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/brainvisa-5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/disco/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
From https://bioproj.extra.cea.fr/git/brainvisa-disco
186f84c..e28a829 master -> origin/master
9f37b38..fe4df47 soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/highres-cortex/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/neurospin/highres-cortex
a2d6a7d..4bb7822 master -> origin/master
ce77394..a6f7bef soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/morphologist/morpho-deepsulci/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-baby/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
From https://bioproj.extra.cea.fr/git/brainvisa-t1mri/morphologist-baby
25f60fe..081d314 master -> origin/master
f161357..f70333d soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-gpl/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-nonfree/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/morphologist-nonfree
6c1a547..99c9085 soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-ui/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/sulci-nonfree/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/populse/populse_db/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/populse/populse_db
a5b230b..9efe650 soma-env-6.0 -> origin/soma-env-6.0
5dee718..38152e3 storage_server -> origin/storage_server
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/brainvisa-5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/soma/soma-base/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/populse/soma-base
07c6662..bc5d03d soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/soma/soma-io/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/soma-io
9a978e0..edd62eb master -> origin/master
879a81e..e341d27 soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/soma/soma-workflow/5.1
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/populse/soma-workflow
2c48804..ac05fa4 gh-pages -> origin/gh-pages
030d946..9e731d2 master -> origin/master
030d946..4488fb1 soma-env-6.0 -> origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/brainvisa-5.1
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Summary of Git repositories in /casa/host/src
=============================================
┌───── * uncommitted working tree changes
│┌──── + uncommitted index changes
││┌─── $ stash present
│││┌── % untracked files
││││ ┌ HEAD
││││ │ ┌ update status
││││ │ │ ┌ bv_maker upstream state
││││ │ │ │ ┌ Git upstream state
││││ │ │ │ │┌ Directory
5.1 (c2aa88e3) ✓ U= aims/aims-free/5.1
5.1 (97376ef) ✓ U= aims/aims-gpl/5.1
5.1 (bbcb1b7e) ✓ U= anatomist/anatomist-free/5.1
% 5.1 (8ad4fe7) ✓ U= anatomist/anatomist-gpl/5.1
5.1 (f8ddb5ff) ✓ U= axon/5.1
5.1 (67f7662) ✓ U= brainrat/bioprocessing/5.1
5.1 (26036c5) ✓ U= brainrat/brainrat-gpl/5.1
5.1 (5816a10) ✓ U= brainrat/brainrat-private/5.1
5.1 (71ccab2) ✓ U= brainrat/primatologist-gpl/5.1
5.1 (112628e) ✓ U= brainvisa-share/5.1
5.1 (e540f63) ✓ U= brainvisa-spm/5.1
brainvisa-5.1 (495854fb) ✓ U= capsul/5.1
5.1 (aa5b480) ✓ U= constellation/constellation-gpl/5.1
5.1 (8f35114) ✓ U= constellation/constellation-nonfree/5.1
5.1 (3e48f1b) ✓ U= cortical_surface/brainvisa_freesurfer/5.1
5.1 (acc2806) ✓ U= cortical_surface/cortical_surface-gpl/5.1
5.1 (c419f93) ✓ U= cortical_surface/cortical_surface-nonfree/5.1
% 5.1 (e6c18a8) ✓ U= development/brainvisa-cmake/5.1
brainvisa-5.1 (29a3fc4) ✓ U= development/casa-distro/5.1
5.1 (444a944) ✓ U= disco/5.1
5.1 (73138d2) ✓ U= highres-cortex/5.1
5.1 (ef06c33) ✓ U= morphologist/morpho-deepsulci/5.1
5.1 (febf614) ✓ U= morphologist/morphologist-baby/5.1
5.1 (1a7b0109) ✓ U= morphologist/morphologist-gpl/5.1
5.1 (fa7dbd4) ✓ U= morphologist/morphologist-nonfree/5.1
5.1 (840bb59) ✓ U= morphologist/morphologist-ui/5.1
5.1 (7d0c502) ✓ U= morphologist/sulci-nonfree/5.1
brainvisa-5.1 (9010826) ✓ U= populse/populse_db/5.1
5.1 (e53c049) ✓ U= soma/soma-base/5.1
5.1 (d4d6445) ✓ U= soma/soma-io/5.1
brainvisa-5.1 (0513d80) ✓ U= soma/soma-workflow/5.1
bv_maker summary:
OK step sources: /casa/host/src, started: 2025/10/06 04:55, stopped: 2025/10/06 04:55
All went good.
Finished: SUCCESS