Console Output
Started
Running as brainvisa
----------------------------------------
$ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin/casa_distro bv_maker name=cea-master-5.3 -- sources
----------------------------------------
Updating git repository /casa/host/src/aims/aims-free/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/aims/aims-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/anatomist/anatomist-free/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/anatomist/anatomist-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/axon/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/axon
193f3999..228593d2 master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Updating 193f3999..228593d2
Fast-forward
.../data management/processes/database_qc_table.py | 69 ++++++++++++++++++++-
python/brainvisa/processing/axon_fso_to_fom.py | 12 ++--
share/icons/code_bad.png | Bin 0 -> 5666 bytes
share/icons/code_ok.png | Bin 0 -> 5543 bytes
share/icons/code_suspicious.png | Bin 0 -> 5714 bytes
share/icons/code_warning.png | Bin 0 -> 5621 bytes
6 files changed, 74 insertions(+), 7 deletions(-)
create mode 100644 share/icons/code_bad.png
create mode 100644 share/icons/code_ok.png
create mode 100644 share/icons/code_suspicious.png
create mode 100644 share/icons/code_warning.png
Updating git repository /casa/host/src/brainrat/bioprocessing/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/brainrat-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/brainrat-private/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/primatologist-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainvisa-share/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainvisa-spm/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/capsul/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/constellation/constellation-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/constellation/constellation-nonfree/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/brainvisa_freesurfer/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/cortical_surface-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/cortical_surface-nonfree/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/development/brainvisa-cmake/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/development/casa-distro/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/development/neuro-forge/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/neurospin/neuro-forge
4d717e9..7acf283 main -> origin/main
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/main
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Updating 4d717e9..7acf283
Fast-forward
README.md | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
Updating git repository /casa/host/src/disco/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/highres-cortex/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/morphologist/morpho-deepsulci/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/morphologist-gpl
be67ac93..54ad2d79 master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Updating be67ac93..54ad2d79
Fast-forward
.../processes/morphologist_qc_table.py | 23 +++++++++++++++++++---
.../processes/morphometry/morpho_report.py | 4 ++--
2 files changed, 22 insertions(+), 5 deletions(-)
Updating git repository /casa/host/src/morphologist/morphologist-nonfree/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-ui/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/sulci-nonfree/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/populse/populse_db/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/soma/soma-base/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/soma/soma-io/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/soma/soma-workflow/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Summary of Git repositories in /casa/host/src
=============================================
┌───── * uncommitted working tree changes
│┌──── + uncommitted index changes
││┌─── $ stash present
│││┌── % untracked files
││││ ┌ HEAD
││││ │ ┌ update status
││││ │ │ ┌ bv_maker upstream state
││││ │ │ │ ┌ Git upstream state
││││ │ │ │ │┌ Directory
master (b97849be) ✓ U= aims/aims-free/master
master (87e39e9) ✓ U= aims/aims-gpl/master
master (84ba56b0) ✓ U= anatomist/anatomist-free/master
% master (1d3513c) ✓ U= anatomist/anatomist-gpl/master
master (228593d2) ✓ U= axon/master
master (bb16881) ✓ U= brainrat/bioprocessing/master
master (6d8b347) ✓ U= brainrat/brainrat-gpl/master
master (e9670b4) ✓ U= brainrat/brainrat-private/master
master (f30acde) ✓ U= brainrat/primatologist-gpl/master
master (38f65ef) ✓ U= brainvisa-share/master
master (fc46c08) ✓ U= brainvisa-spm/master
master (d6e0ba76) ✓ U= capsul/master
master (ea5df9f) ✓ U= constellation/constellation-gpl/master
master (ccb3558) ✓ U= constellation/constellation-nonfree/master
master (a40875d) ✓ U= cortical_surface/brainvisa_freesurfer/master
master (04f5e7e) ✓ U= cortical_surface/cortical_surface-gpl/master
master (c20dd90) ✓ U= cortical_surface/cortical_surface-nonfree/master
master (e78d206) ✓ U= development/brainvisa-cmake/master
master (6041af0) ✓ U= development/casa-distro/master
main (7acf283) ✓ U= development/neuro-forge/master
master (186f84c) ✓ U= disco/master
master (a2d6a7d) ✓ U= highres-cortex/master
master (e72510d) ✓ U= morphologist/morpho-deepsulci/master
master (54ad2d79) ✓ U= morphologist/morphologist-gpl/master
master (c8cf86b) ✓ U= morphologist/morphologist-nonfree/master
master (c22bab8) ✓ U= morphologist/morphologist-ui/master
master (cb2e0eb) ✓ U= morphologist/sulci-nonfree/master
master (79ff912) ✓ U= populse/populse_db/master
master (d82b6e4) ✓ U= soma/soma-base/master
master (472aead) ✓ U= soma/soma-io/master
master (5c2efcc) ✓ U= soma/soma-workflow/master
bv_maker summary:
OK step sources: /casa/host/src, started: 2025/04/25 06:06, stopped: 2025/04/25 06:06
All went good.
Finished: SUCCESS
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