Started Running as brainvisa ---------------------------------------- $ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin/casa_distro bv_maker name=cea-master-5.3 -- sources ---------------------------------------- Updating git repository /casa/host/src/aims/aims-free/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' From https://github.com/brainvisa/aims-free ccde4039..5bfc5e14 master -> origin/master $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Updating ccde4039..5bfc5e14 Fast-forward ecat/src/lib/kernel/matpkg.c | 13 ++++--------- ecat/src/lib/kernel/matpkg.h | 24 +++++++++++++----------- ecat/src/lib/kernel/matrix.c | 25 +++++++++++-------------- ecat/src/lib/kernel/matrix.h | 1 + ecat/src/lib/kernel/matrix_extra.c | 13 ++----------- ecat/src/lib/lib_compress/compress.c | 12 +++--------- ecat/src/lib/lib_compress/compress.h | 14 +++++++++----- ecat/src/lib/lib_compress/uvlc.h | 6 ++++-- ecat/src/lib/lib_compress/z_matrix.c | 2 +- 9 files changed, 48 insertions(+), 62 deletions(-) Updating git repository /casa/host/src/aims/aims-gpl/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/anatomist/anatomist-free/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/anatomist/anatomist-gpl/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/axon/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/brainrat/bioprocessing/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' Using BioProj credentials stored in svn.secret (username 'brainvisa-admin') $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/brainrat/brainrat-gpl/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' Using BioProj credentials stored in svn.secret (username 'brainvisa-admin') $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/brainrat/brainrat-private/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' Using BioProj credentials stored in svn.secret (username 'brainvisa-admin') $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/brainrat/primatologist-gpl/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' Using BioProj credentials stored in svn.secret (username 'brainvisa-admin') $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/brainvisa-share/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/brainvisa-spm/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/capsul/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /casa/host/src/constellation/constellation-gpl/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/constellation/constellation-nonfree/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/cortical_surface/brainvisa_freesurfer/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/cortical_surface/cortical_surface-gpl/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/cortical_surface/cortical_surface-nonfree/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/development/brainvisa-cmake/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /casa/host/src/development/casa-distro/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /casa/host/src/development/neuro-forge/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/main $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/disco/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' Using BioProj credentials stored in svn.secret (username 'brainvisa-admin') $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /casa/host/src/highres-cortex/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /casa/host/src/morphologist/morpho-deepsulci/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/morphologist/morphologist-gpl/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/morphologist/morphologist-nonfree/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/morphologist/morphologist-ui/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/morphologist/sulci-nonfree/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/populse/populse_db/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' From https://github.com/populse/populse_db 57633a4..82437e8 pre-commit-ci-update-config -> origin/pre-commit-ci-update-config $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /casa/host/src/soma/soma-base/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /casa/host/src/soma/soma-io/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Already up to date. Updating git repository /casa/host/src/soma/soma-workflow/master $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' From https://github.com/populse/soma-workflow 378997d..9086676 gh-pages -> origin/gh-pages 978078c..b83186e master -> origin/master 672ccf9..4e1ebcf pre-commit-ci-update-config -> origin/pre-commit-ci-update-config $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Updating 978078c..b83186e Fast-forward .pre-commit-config.yaml | 8 +- python/soma_workflow/client.py | 81 +++++++++++---------- python/soma_workflow/client_types.py | 135 ++++++++++++++++------------------ python/soma_workflow/engine.py | 137 +++++++++++++++++------------------ 4 files changed, 179 insertions(+), 182 deletions(-) $ pre-commit install pre-commit installed at .git/hooks/pre-commit Summary of Git repositories in /casa/host/src ============================================= ┌───── * uncommitted working tree changes │┌──── + uncommitted index changes ││┌─── $ stash present │││┌── % untracked files ││││ ┌ HEAD ││││ │ ┌ update status ││││ │ │ ┌ bv_maker upstream state ││││ │ │ │ ┌ Git upstream state ││││ │ │ │ │┌ Directory master (5bfc5e14) ✓ U= aims/aims-free/master master (87e39e9) ✓ U= aims/aims-gpl/master master (e414bea7) ✓ U= anatomist/anatomist-free/master % master (fa70746) ✓ U= anatomist/anatomist-gpl/master master (f997fc8a) ✓ U= axon/master master (bb16881) ✓ U= brainrat/bioprocessing/master master (9a3882e) ✓ U= brainrat/brainrat-gpl/master master (e9670b4) ✓ U= brainrat/brainrat-private/master master (f30acde) ✓ U= brainrat/primatologist-gpl/master master (869819a) ✓ U= brainvisa-share/master master (273f2ca) ✓ U= brainvisa-spm/master master (3fd2e485) ✓ U= capsul/master master (ea5df9f) ✓ U= constellation/constellation-gpl/master master (ccb3558) ✓ U= constellation/constellation-nonfree/master master (a40875d) ✓ U= cortical_surface/brainvisa_freesurfer/master master (04f5e7e) ✓ U= cortical_surface/cortical_surface-gpl/master master (c20dd90) ✓ U= cortical_surface/cortical_surface-nonfree/master master (6551b6a) ✓ U= development/brainvisa-cmake/master master (69ef51d) ✓ U= development/casa-distro/master main (016fe62) ✓ U= development/neuro-forge/master master (186f84c) ✓ U= disco/master master (a2d6a7d) ✓ U= highres-cortex/master master (e72510d) ✓ U= morphologist/morpho-deepsulci/master master (4333dbf9) ✓ U= morphologist/morphologist-gpl/master master (c8cf86b) ✓ U= morphologist/morphologist-nonfree/master master (c22bab8) ✓ U= morphologist/morphologist-ui/master master (cb2e0eb) ✓ U= morphologist/sulci-nonfree/master master (f271e95) ✓ U= populse/populse_db/master master (f6a92dc) ✓ U= soma/soma-base/master master (9a978e0) ✓ U= soma/soma-io/master master (b83186e) ✓ U= soma/soma-workflow/master bv_maker summary: OK step sources: /casa/host/src, started: 2025/08/26 04:59, stopped: 2025/08/26 04:59 All went good. Finished: SUCCESS