Console Output
Started
Running as brainvisa
----------------------------------------
$ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin/casa_distro bv_maker name=cea-master-5.3 -- sources
----------------------------------------
Updating git repository /casa/host/src/aims/aims-free/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/aims/aims-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/anatomist/anatomist-free/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/brainvisa/anatomist-free
40987e03..bbf793cb master -> origin/master
9d863c58..66f2c6ad shader-revamp -> origin/shader-revamp
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Updating 40987e03..bbf793cb
Fast-forward
src/lib/color/minipalette.cc | 23 ++++++++++++++++++++---
src/lib/object/Object.cc | 1 -
2 files changed, 20 insertions(+), 4 deletions(-)
Updating git repository /casa/host/src/anatomist/anatomist-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/axon/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/bioprocessing/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/brainrat-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/brainrat-private/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainrat/primatologist-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
From https://bioproj.extra.cea.fr/git/primatologist-gpl
f30acde..bcee21e master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Updating f30acde..bcee21e
Fast-forward
.../processes/analysis/HierarchicalRoiAnalysis.py | 10 ++++++++--
python/primatologist/morphology.py | 6 ++++--
2 files changed, 12 insertions(+), 4 deletions(-)
Updating git repository /casa/host/src/brainvisa-share/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/brainvisa-spm/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/capsul/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/populse/capsul
- [deleted] (none) -> origin/pre-commit-ci-update-config
c8bcedee..a447e53d gh-pages -> origin/gh-pages
168f4a3c..048dae00 master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Updating 168f4a3c..048dae00
Fast-forward
.pre-commit-config.yaml | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/constellation/constellation-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/constellation/constellation-nonfree/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/brainvisa_freesurfer/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/cortical_surface-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/cortical_surface/cortical_surface-nonfree/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/development/brainvisa-cmake/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/development/casa-distro/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/development/neuro-forge/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/main
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/disco/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Using BioProj credentials stored in svn.secret (username 'brainvisa-admin')
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/highres-cortex/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/morphologist/morpho-deepsulci/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-gpl/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-nonfree/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/morphologist-ui/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/morphologist/sulci-nonfree/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/populse/populse_db/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
From https://github.com/populse/populse_db
e2cee05..6ab5f80 master -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Updating e2cee05..6ab5f80
Fast-forward
.pre-commit-config.yaml | 2 +-
python/populse_db/server.py | 1 -
python/populse_db/test/test_storage.py | 13 ++++++-------
3 files changed, 7 insertions(+), 9 deletions(-)
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/soma/soma-base/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Updating git repository /casa/host/src/soma/soma-io/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
Updating git repository /casa/host/src/soma/soma-workflow/master
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Already up to date.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit
Summary of Git repositories in /casa/host/src
=============================================
┌───── * uncommitted working tree changes
│┌──── + uncommitted index changes
││┌─── $ stash present
│││┌── % untracked files
││││ ┌ HEAD
││││ │ ┌ update status
││││ │ │ ┌ bv_maker upstream state
││││ │ │ │ ┌ Git upstream state
││││ │ │ │ │┌ Directory
master (ead93684) ✓ U= aims/aims-free/master
master (87e39e9) ✓ U= aims/aims-gpl/master
master (bbf793cb) ✓ U= anatomist/anatomist-free/master
master (d3663a1) ✓ U= anatomist/anatomist-gpl/master
master (d2865cc4) ✓ U= axon/master
master (47145d2) ✓ U= brainrat/bioprocessing/master
master (863e579) ✓ U= brainrat/brainrat-gpl/master
master (20f9016) ✓ U= brainrat/brainrat-private/master
master (bcee21e) ✓ U= brainrat/primatologist-gpl/master
master (869819a) ✓ U= brainvisa-share/master
master (e77cda3) ✓ U= brainvisa-spm/master
master (048dae00) ✓ U= capsul/master
master (5bb66e6) ✓ U= constellation/constellation-gpl/master
master (ccb3558) ✓ U= constellation/constellation-nonfree/master
master (80716f7) ✓ U= cortical_surface/brainvisa_freesurfer/master
master (0ac8a75) ✓ U= cortical_surface/cortical_surface-gpl/master
master (c20dd90) ✓ U= cortical_surface/cortical_surface-nonfree/master
master (c924c10) ✓ U= development/brainvisa-cmake/master
master (d0e4e2e) ✓ U= development/casa-distro/master
main (8e7e630) ✓ U= development/neuro-forge/master
master (e28a829) ✓ U= disco/master
master (4bb7822) ✓ U= highres-cortex/master
master (e72510d) ✓ U= morphologist/morpho-deepsulci/master
master (4333dbf9) ✓ U= morphologist/morphologist-gpl/master
master (c8cf86b) ✓ U= morphologist/morphologist-nonfree/master
master (c22bab8) ✓ U= morphologist/morphologist-ui/master
master (cb2e0eb) ✓ U= morphologist/sulci-nonfree/master
master (6ab5f80) ✓ U= populse/populse_db/master
master (f6a92dc) ✓ U= soma/soma-base/master
master (edd62eb) ✓ U= soma/soma-io/master
master (9e731d2) ✓ U= soma/soma-workflow/master
bv_maker summary:
OK step sources: /casa/host/src, started: 2025/10/08 04:59, stopped: 2025/10/08 04:59
All went good.
Finished: SUCCESS
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