Console Output

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/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U32.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_U32': soma.aims.Volume_U32, soma.aims.soma.aims.Volume_U32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U32.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_U32': soma.aims.Volume_U32, soma.aims.soma.aims.Volume_U32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U32.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.Transformation3d, soma.aims.soma.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U32.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_U32': soma.aims.Volume_U32, soma.aims.soma.aims.Volume_U32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U32.setRef:1: WARNING: more than one target found for cross-reference 'Volume_U32': soma.aims.Volume_U32, soma.aims.soma.aims.Volume_U32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.doit:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.doit:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.ref:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.Transformation3d, soma.aims.soma.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.Transformation3d, soma.aims.soma.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.setRef:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_DOUBLE.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_DOUBLE.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_FLOAT.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_HSV.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_POINT3DF.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_RGB.reset:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_RGB.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_RGBA.reset:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_RGBA.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_S16.reset:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_S16.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_S32.reset:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_S32.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U16.reset:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U16.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U32.reset:1: WARNING: more than one target found for cross-reference 'Volume_U32': soma.aims.Volume_U32, soma.aims.soma.aims.Volume_U32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U32.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U8.reset:1: WARNING: more than one target found for cross-reference 'Volume_U8': soma.aims.Volume_U8, soma.aims.soma.aims.Volume_U8
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U8.reset:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aims/lazy_read_data.py:docstring of soma.aims.lazy_read_data.LazyReadData:1: WARNING: more than one target found for cross-reference 'AllocatorContext': soma.aims.carto.AllocatorContext, soma.aims.carto.carto.AllocatorContext
/casa/host/build/python/soma/aimsalgo/lazy_resample_volume.py:docstring of soma.aimsalgo.lazy_resample_volume.LazyResampleVolume:1: WARNING: more than one target found for cross-reference 'aims.AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/sulci/graph_pointcloud.py:docstring of soma.aimsalgo.sulci.graph_pointcloud.build_split_graph:1: WARNING: more than one target found for cross-reference 'aims.Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/sulci/graph_pointcloud.py:docstring of soma.aimsalgo.sulci.graph_pointcloud.build_split_graph:1: WARNING: more than one target found for cross-reference 'aims.Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
generating indices... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,122::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,132::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
generating CAPSUL processes docs...
['/usr/bin/python3.10', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist', '--schema']
loading pickled environment... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,155::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,166::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,175::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,182::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
genindex [ 91%] Generating AimsInvertTransformation help file ...
py-modindex done
copying linked files... 
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writing additional pages... search done
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copying downloadable files... [ 50%] ../../../../../../build/build_files/aims-free/pyaims/python/pyaims_tutorial_nb.ipynb
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loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv...
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WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'doc/morphologist-ui-5.2/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/doc/morphologist-ui-5.2/objects.inv'
[ 91%] Built target axon-sphinx
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build succeeded, 351 warnings.

The HTML pages are in ../../../../share/doc/pyaims-5.2/sphinx.
[autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morpho_intersubject_status.MorphoInterSubjectStatus.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, sulpated.rst
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building [html]: targets for 64 source files that are out of date
updating environment: 0 added, 62 changed, 0 removed
reading sources... [  1%] process_docs/morphologist/capsul/index
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reading sources... [  6%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline
reading sources... [  8%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation
reading sources... [  9%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,903::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,915::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
reading sources... [ 11%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,925::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,925::INFO::pipeline: '15' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,925::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,926::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,927::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,928::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,929::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-19 05:54:21,961::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process/index.rst'...
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/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
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/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
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/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:118: WARNING: Citation [PERROT2009] is not referenced.
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done
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['/usr/bin/python3.10', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.sulci_labeling.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci', '--schema']
['/usr/bin/python3.10', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.pattern_classification.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci', '--schema']
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.. see:: :meth:`capsul.process.process.check_requirements`
/casa/host/src/capsul/master/capsul/pipeline/pipeline_nodes.py:docstring of capsul.pipeline.pipeline_nodes.ProcessNode.get_plug_value:1: WARNING: duplicate object description of capsul.pipeline.pipeline_nodes.ProcessNode.get_plug_value, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/pipeline_nodes.py:docstring of capsul.pipeline.pipeline_nodes.ProcessNode.get_trait:1: WARNING: duplicate object description of capsul.pipeline.pipeline_nodes.ProcessNode.get_trait, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/pipeline_nodes.py:docstring of capsul.pipeline.pipeline_nodes.ProcessNode.set_callback_on_plug:1: WARNING: duplicate object description of capsul.pipeline.pipeline_nodes.ProcessNode.set_callback_on_plug, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/pipeline_nodes.py:docstring of capsul.pipeline.pipeline_nodes.ProcessNode.set_plug_value:1: WARNING: duplicate object description of capsul.pipeline.pipeline_nodes.ProcessNode.set_plug_value, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/pipeline_tools.py:docstring of capsul.pipeline.pipeline_tools.write_fake_pipeline:8: ERROR: Unknown interpreted text role "warning".
/casa/host/src/capsul/master/capsul/pipeline/topological_sort.py:docstring of capsul.pipeline.topological_sort.Graph.add_link:1: WARNING: duplicate object description of capsul.pipeline.topological_sort.Graph.add_link, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/topological_sort.py:docstring of capsul.pipeline.topological_sort.Graph.add_node:1: WARNING: duplicate object description of capsul.pipeline.topological_sort.Graph.add_node, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/topological_sort.py:docstring of capsul.pipeline.topological_sort.Graph.find_node:1: WARNING: duplicate object description of capsul.pipeline.topological_sort.Graph.find_node, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/topological_sort.py:docstring of capsul.pipeline.topological_sort.Graph.topological_sort:1: WARNING: duplicate object description of capsul.pipeline.topological_sort.Graph.topological_sort, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/topological_sort.py:docstring of capsul.pipeline.topological_sort.GraphNode.add_link_from:1: WARNING: duplicate object description of capsul.pipeline.topological_sort.GraphNode.add_link_from, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/topological_sort.py:docstring of capsul.pipeline.topological_sort.GraphNode.add_link_to:1: WARNING: duplicate object description of capsul.pipeline.topological_sort.GraphNode.add_link_to, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/topological_sort.py:docstring of capsul.pipeline.topological_sort.GraphNode.remove_link_from:1: WARNING: duplicate object description of capsul.pipeline.topological_sort.GraphNode.remove_link_from, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/pipeline/topological_sort.py:docstring of capsul.pipeline.topological_sort.GraphNode.remove_link_to:1: WARNING: duplicate object description of capsul.pipeline.topological_sort.GraphNode.remove_link_to, other instance in api/pipeline, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/process/process.py:docstring of capsul.process.process.NipypeProcess:32: WARNING: Bullet list ends without a blank line; unexpected unindent.
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.add_embedded_subpipeline:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.add_embedded_subpipeline, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.auto_dot_node_positions:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.auto_dot_node_positions, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.colored_parameters:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.colored_parameters, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.is_logical_view:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.is_logical_view, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.link_right_clicked:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.link_right_clicked, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.node_clicked:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.node_clicked, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.node_clicked_ctrl:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.node_clicked_ctrl, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.node_right_clicked:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.node_right_clicked, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.onLoadSubPipelineClicked:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.onLoadSubPipelineClicked, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.onOpenProcessController:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.onOpenProcessController, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.plug_clicked:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.plug_clicked, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.plug_right_clicked:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.plug_right_clicked, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.reset_initial_nodes_positions:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.reset_initial_nodes_positions, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.save_dot_image_ui:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.save_dot_image_ui, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.scene:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.scene, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.set_logical_view:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.set_logical_view, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.set_pipeline:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.set_pipeline, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.subpipeline_clicked:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.subpipeline_clicked, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.window:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.window, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.zoom_in:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.zoom_in, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/qt_gui/widgets/pipeline_developer_view.py:docstring of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.zoom_out:1: WARNING: duplicate object description of capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView.zoom_out, other instance in api/qt_gui, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/memory.py:docstring of capsul.study_config.memory.Memory.cache:1: WARNING: duplicate object description of capsul.study_config.memory.Memory.cache, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/memory.py:docstring of capsul.study_config.memory.Memory.clear:1: WARNING: duplicate object description of capsul.study_config.memory.Memory.clear, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/study_config.py:docstring of capsul.study_config.study_config.StudyConfig.get_trait:1: WARNING: duplicate object description of capsul.study_config.study_config.StudyConfig.get_trait, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/study_config.py:docstring of capsul.study_config.study_config.StudyConfig.get_trait_value:1: WARNING: duplicate object description of capsul.study_config.study_config.StudyConfig.get_trait_value, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/study_config.py:docstring of capsul.study_config.study_config.StudyConfig.reset_process_counter:1: WARNING: duplicate object description of capsul.study_config.study_config.StudyConfig.reset_process_counter, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/study_config.py:docstring of capsul.study_config.study_config.StudyConfig.run:1: WARNING: duplicate object description of capsul.study_config.study_config.StudyConfig.run, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/study_config.py:docstring of capsul.study_config.study_config.StudyConfig.set_study_configuration:1: WARNING: duplicate object description of capsul.study_config.study_config.StudyConfig.set_study_configuration, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/study_config.py:docstring of capsul.study_config.study_config.StudyConfig.set_trait_value:1: WARNING: duplicate object description of capsul.study_config.study_config.StudyConfig.set_trait_value, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/study_config.py:docstring of capsul.study_config.study_config.StudyConfig.update_study_configuration:1: WARNING: duplicate object description of capsul.study_config.study_config.StudyConfig.update_study_configuration, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/config_modules/somaworkflow_config.py:docstring of capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.connect_resource:1: WARNING: duplicate object description of capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.connect_resource, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/config_modules/somaworkflow_config.py:docstring of capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.disconnect_resource:1: WARNING: duplicate object description of capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.disconnect_resource, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/config_modules/somaworkflow_config.py:docstring of capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.get_resource_id:1: WARNING: duplicate object description of capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.get_resource_id, other instance in api/study_config, use :noindex: for one of them
/casa/host/src/capsul/master/capsul/study_config/config_modules/somaworkflow_config.py:docstring of capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.get_workflow_controller:1: WARNING: duplicate object description of capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.get_workflow_controller, other instance in api/study_config, use :noindex: for one of them
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[ 91%] Generating AimsTextureSmoothing help file ...
[ 91%] Generating AimsTextureThreshold help file ...
[ 91%] Generating AimsTextureVoronoi help file ...
[ 91%] Generating AimsTopologicalClassification help file ...
[ 91%] Generating AimsValidateFit help file ...
[ 91%] Generating AimsVeinExtraction help file ...
[ 91%] Generating AimsVFilter help file ...
[ 91%] Generating AimsVoiStat help file ...
[ 91%] Generating AimsVol2Tex help file ...
[ 91%] Generating AimsVoronoi help file ...
[ 91%] Generating AimsZCat help file ...
[ 91%] Generating AimsBundleSelectCenter help file ...
[ 91%] Generating AimsFovSplit help file ...
[ 91%] Generating AimsSumPETFrame help file ...
[ 91%] Generating AimsSiemensEPI2Volume help file ...
[ 91%] Generating AimsRegisterFFDEstimate help file ...
[ 91%] Generating AimsAttributedViewer help file ...
[ 91%] Generating AimsLabelSelector help file ...
[ 91%] Generating anatomist-bin help file ...
[ 91%] Generating mkhierarchy-anatomist help file ...
[ 91%] Generating ylLaplacian help file ...
[ 91%] Generating ylIsoCurvature help file ...
[ 91%] Generating ylAdvectEuclidean help file ...
[ 91%] Generating ylAdvectPath help file ...
[ 91%] Generating ylAdvectTubes help file ...
[ 91%] Generating ylAdvectValues help file ...
[ 91%] Generating ylPropagateAlongField help file ...
[ 91%] Generating ylLabelEachVoxel help file ...
[ 91%] Generating ylMergeCortexColumnRegions help file ...
[ 91%] Generating ylMakeTraversePseudoAreaMap help file ...
[ 91%] Generating ylUpwindDistance help file ...
[ 91%] Generating AimsRegisterFFDApply help file ...
[ 91%] Generating AimsRegisterFFDFromCoordImages help file ...
[ 91%] Generating AimsRegisterBMEstimate help file ...
[ 95%] Generating AimsPCAloc2 help file ...
[ 95%] Generating VipPreprocessing help file ...
[ 95%] Generating AimsRefineMesh help file ...
[ 95%] Generating VipClosing help file ...
[ 95%] Generating VipCovarianceMatrix help file ...
[ 95%] Generating VipDeriche help file ...
[ 95%] Generating VipDilation help file ...
[ 95%] Generating VipDistanceMap help file ...
[ 95%] Generating VipErosion help file ...
[ 95%] Generating VipExtEdge help file ...
[ 95%] Generating VipFileDump help file ...
[ 95%] Generating VipFoetusHomotopicSnake help file ...
[ 95%] Generating VipFoldArg help file ...
[ 95%] Generating VipFoldArgAtt help file ...
[ 95%] Generating VipGeometry help file ...
[ 95%] Generating AimsPCAloc help file ...
[ 95%] Generating AimsPCAfilter help file ...
[ 95%] Generating VipGetBrain help file ...
[ 95%] Generating VipBiasCorrection help file ...
[ 95%] Generating VipGreyStatFromClassif help file ...
[ 95%] Generating VipGreyWhiteClassif help file ...
[ 95%] Generating VipHistoAnalysis help file ...
[ 95%] Generating VipHomotopic help file ...
[ 95%] Generating VipHomotopicSnake help file ...
[ 95%] Generating VipHyste help file ...
[ 95%] Generating VipLabelArg help file ...
[ 95%] Generating VipLabelContour help file ...
[ 95%] Generating VipLabelMatching help file ...
[ 95%] Generating VipLabelOverlap help file ...
[ 95%] Generating VipListLabel help file ...
[ 95%] Generating VipMatching help file ...
[ 95%] Generating VipMinimizeInformation help file ...
[ 95%] Generating VipMerge help file ...
[ 95%] Generating VipMoment help file ...
[ 95%] Generating VipOpenFold help file ...
[ 95%] Generating VipPca help file ...
[ 95%] Generating VipOpening help file ...
[ 95%] Generating VipSetPointValue help file ...
[ 95%] Generating VipSkeleton help file ...
[ 95%] Generating VipSplitBrain help file ...
[ 95%] Generating VipSwapEndian help file ...
[ 95%] Generating VipT1BiasCorrection help file ...
[ 95%] Generating VipTalairachCoordinates help file ...
[ 95%] Generating VipTopoClassifMeaning help file ...
[ 95%] Generating VipGetHead help file ...
[ 95%] Generating VipTopoClassification help file ...
[ 95%] Generating vip_test_well_composed_configurations help file ...
[ 95%] Generating neurlearn help file ...
[ 95%] Generating neurpatimport help file ...
[ 95%] Generating vip_test_well_composed_topology help file ...
[ 95%] Generating neurmakenet help file ...
[ 95%] Generating readFolds help file ...
[ 95%] Generating siChangeModels help file ...
[ 95%] Generating VipTalairachTransform help file ...
[ 95%] Generating siCopyNames help file ...
[ 95%] Generating siDivNameList help file ...
[ 95%] Generating siEnergy help file ...
[ 95%] Generating AimsParamCorrectDti help file ...
[ 95%] Generating siError help file ...
[ 95%] Generating siFlip help file ...
[ 95%] Generating siErrorStats help file ...
[ 95%] Generating siFunctionalGraphs help file ...
[ 95%] Generating siGraph2Label help file ...
[ 95%] Generating sigraph-config help file ...
[ 95%] Generating siLearn help file ...
[ 95%] Generating siLyxErrors help file ...
[ 95%] Generating siMakeColoredHierarchy help file ...
[ 95%] Generating siMakeModel help file ...
[ 95%] Generating siMakeParcellationHierarchy help file ...
[ 95%] Generating siMergeModels help file ...
[ 95%] Generating siDomTrain help file ...
[ 95%] Generating siMeshSulciOperture help file ...
[ 95%] Generating siMkModelEdges help file ...
[ 95%] Generating siMeshSulciProjection help file ...
[ 95%] Generating siMorpho help file ...
[ 95%] Generating siMultilabelCompare help file ...
[ 95%] Generating siParcellation help file ...
[ 95%] Generating siPutTextureInModel help file ...
[ 95%] Generating siPIDcommand help file ...
[ 95%] Generating siRelax help file ...
[ 95%] Generating siRevert help file ...
[ 95%] Generating siTestModels help file ...
[ 95%] Generating siSulcalParcellation help file ...
[ 95%] Generating siTriangModel help file ...
[ 95%] Generating siTryGauss help file ...
[ 95%] Generating AimsReadDpy help file ...
[ 95%] Generating bioReadDpy help file ...
[ 95%] Generating AimsAdaptiveSelVoxel help file ...
[ 95%] Generating AimsAxialProjection help file ...
[ 95%] Generating AimsBorderGenerate help file ...
[ 95%] Generating AimsBorderInfo help file ...
[ 95%] Generating AimsCenterSlices help file ...
[ 95%] Generating AimsFeaturesExtraction help file ...
[ 95%] Generating AimsFovAdapt help file ...
[ 95%] Generating AimsGL2Activity help file ...
[ 95%] Generating AimsIndividStackSlices help file ...
[ 95%] Generating AimsInterSliceNormalize help file ...
[ 95%] Generating AimsManualRegistration help file ...
[ 95%] Generating AimsMidPlaneAlign help file ...
[ 95%] Generating bioDetectSlices help file ...
[ 95%] Generating bioModelClassify help file ...
[ 95%] Generating bioModelGenerate help file ...
[ 95%] Generating AimsAmyloidLoadAvgDistNeigh help file ...
[ 95%] Generating AimsAffineRegister help file ...
[ 95%] Generating AimsAmyloidDensity help file ...
[ 95%] Generating AimsAmyloidLoadInvSurfVor help file ...
[ 95%] Generating AimsAmyloidDetection help file ...
[ 95%] Generating AimsAmyloidFiltering help file ...
[ 95%] Generating AimsAmyloidMRIDetection help file ...
[ 95%] Generating AimsBinaryBoundingBox help file ...
[ 95%] Generating AimsAreaNbConnectCompRatio help file ...
[ 95%] Generating AimsBorderCrop help file ...
[ 95%] Generating AimsBorderLineProj help file ...
[ 95%] Generating AimsBinaryBorder help file ...
[ 95%] Generating AimsBoundingBoxCalculation help file ...
[ 95%] Generating AimsBoundingBoxExtraction help file ...
[ 95%] Generating AimsComponentFeaturesProcess help file ...
[ 95%] Generating AimsComponentFeaturesVisualize help file ...
[ 95%] Generating AimsComponentFeaturesMapGenerate help file ...
[ 95%] Generating AimsCorrectImages help file ...
[ 95%] Generating AimsChannelProcess help file ...
[ 95%] Generating AimsCreateFieldsFromMotion help file ...
[ 95%] Generating AimsEntropicThresholding help file ...
[ 95%] Generating AimsEqualizer help file ...
[ 95%] Generating AimsFovCentering help file ...
[ 95%] Generating AimsGenerateVolume help file ...
[ 95%] Generating AimsGridCalibrate help file ...
[ 95%] Generating AimsGridGenerate help file ...
[ 95%] Generating AimsHeightFiltering help file ...
[ 95%] Generating AimsIndexCluster help file ...
[ 95%] Generating AimsIndividSlices help file ...
[ 95%] Generating AimsInterlaceVolumes help file ...
[ 95%] Generating AimsInterpolate help file ...
[ 95%] Generating AimsLabelReorder help file ...
[ 95%] Generating AimsMaskContour help file ...
[ 95%] Generating AimsMergeFFDLabels help file ...
[ 95%] Generating AimsMeshMatching help file ...
[ 95%] Generating AimsMIBucketRegister help file ...
[ 95%] Generating AimsMidPlaneMask help file ...
[ 95%] Generating AimsMosaic help file ...
[ 95%] Generating AimsMultiRecal help file ...
[ 95%] Generating AimsOverlapInfo help file ...
[ 95%] Generating AimsRebuildComp help file ...
[ 95%] Generating AimsResampleFromFieldsData help file ...
[ 95%] Generating AimsRgbToHsv help file ...
[ 95%] Generating AimsRoiOverlap help file ...
[ 95%] Generating AimsSamplingInfo help file ...
[ 95%] Generating AimsSegment2Modes help file ...
[ 95%] Generating AimsSeparateComp help file ...
[ 95%] Generating AimsStereologySampling help file ...
[ 95%] Generating AimsStereotaxy help file ...
[ 95%] Generating AimsSubSamplingConservative help file ...
[ 95%] Generating AimsWatershed help file ...
[ 95%] Generating AimsSeededWatershed help file ...
[ 95%] Generating bioCellBoundingBoxesGenerate help file ...
[ 95%] Generating bioCellEvaluate help file ...
[ 95%] Generating bioClusterStatistics help file ...
[ 95%] Generating bioComponentConnexe help file ...
[ 95%] Generating bioCorrectMissingLabels help file ...
[ 95%] Generating bioExtractAmyloidLoad help file ...
[ 95%] Generating bioExtractDice help file ...
[ 95%] Generating bioFindCellSeeds help file ...
[ 95%] Generating bioMacGetSingleBrain help file ...
[ 95%] Generating bioPrepareData4DlIndiv help file ...
[ 95%] Generating bioRenumberConnectComp help file ...
[ 95%] Generating bioStatDominanceAppli help file ...
[ 95%] Generating bioVoxelFeatures help file ...
[ 95%] Generating AimsAdaptiveGaussianSmoothing help file ...
[ 95%] Generating AimsEdgeExtract help file ...
[ 95%] Generating AimsExtremaMap help file ...
[ 95%] Generating AimsRegionGrowingExtrema help file ...
[ 95%] Generating AimsSigmaImageCalculate help file ...
[ 95%] Generating bioVoxelWiseStatistics help file ...
[ 95%] Generating AimsSegmentationEM help file ...
[ 95%] Generating AimsSelectGradPoints help file ...
[ 95%] Generating AimsRegisterQNEstimate help file ...
[ 95%] Generating bioKMeans help file ...
[ 95%] Generating constelBundlesFiltering help file ...
[ 95%] Generating AimsSparseMatrixSmoothing help file ...
[ 95%] Generating constelConnectionDensityTexture help file ...
[ 95%] Generating constelConnectivityMatrix help file ...
[ 95%] Generating constelFibersLengths help file ...
[ 95%] Generating constelMeanConnectivityProfileFromMatrix help file ...
[ 95%] Generating constelSelectBundlesFromNames help file ...
[ 95%] Generating constelSelectFibersFromMesh help file ...
[ 95%] Generating AimsConstraintCleaner help file ...
[ 95%] Generating AimsGyriStuff help file ...
[ 95%] Generating AimsFlattenCortex help file ...
[ 95%] Generating AimsParameterizeGyri help file ...
[ 95%] Generating AimsParameterizeSulcus help file ...
[ 95%] Generating AimsPlotOnSPhericalAtlas help file ...
[ 95%] Generating AimsSulcusCorticalSnake help file ...
[ 95%] Generating AimsTextureToAtlas help file ...
[ 95%] Generating surfTexActivationSimulation help file ...
[ 95%] Generating surfStructuralAnalysis help file ...
[ 95%] Generating AimsCheck2DCoordinates help file ...
[ 95%] Generating AimsMeshToAtlas help file ...
[ 95%] Generating AimsSulcusNormalizeDepthProfile help file ...
[ 95%] Generating AimsConformalMapping help file ...
[ 95%] Generating AimsMeshCoordinatesToDecimated help file ...
[ 95%] Generating AimsExtractGyrus help file ...
[ 95%] Generating AimsMeshToMeshPoint help file ...
[ 95%] Generating AimsPlotCoordinatesOnMesh help file ...
[ 95%] Generating PlotFociForValidation help file ...
[ 95%] Generating AimsCoordinatesToIndex help file ...
[ 95%] Generating AimsGyriRegularization help file ...
[ 95%] Generating AimsGroupGyri help file ...
[ 95%] Generating AimsGeodesicPath help file ...
[ 95%] Generating AimsInterpolateVolumeToSurface help file ...
[100%] Generating AimsSulcalLines help file ...
[100%] Generating AimsTextureCompare help file ...
[100%] Generating AimsExactDepthArea help file ...
[100%] Generating AimsCoordinatesToTexture help file ...
[100%] Generating AimsCoordinatesTextureToMesh help file ...
[100%] Generating AimsCoordinateGridMesh help file ...
[100%] Generating AimsMeshMedianSurface help file ...
[100%] Generating AimsFunctionProjection help file ...
[100%] Generating AimsCorticalThickness help file ...
[100%] Generating AimsMeshIsoLine help file ...
[100%] Generating AimsCorticalReferential help file ...
[100%] Generating documentation commands help index ...
[100%] Built target bv_commands_doc
[100%] Create "share/doc/2.6"
[100%] Built target capsul-devdoc
[100%] Built target devdoc
[100%] Built target capsul-doc
Generating BrainVISA processes documentation
[100%] Built target bv_ontology_doc
[100%] Built target bv_doc_index
[100%] Built target axon-doc
[100%] Built target doc

bv_maker summary:
OK          step doc: /casa/host/build, started: 2025/11/19 05:54, stopped: 2025/11/19 05:56
All went good.

Finished: SUCCESS