Started Running as brainvisa ---------------------------------------- $ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi-nightly/brainvisa-master-5.3/src/development/casa-distro/master/bin/casa_distro bv_maker name=cea-qt6-5.4 -- doc ---------------------------------------- Building docs in directory: /casa/host/build $ make -j32 doc [ 0%] Create "share/doc/0.0" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/3.0" [ 0%] Create "share/doc/5.3" [ 0%] Create "share/doc/." [ 0%] Create "share/doc/2.6" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/3.3" [ 0%] Create "share/doc/3.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Built target Brainvisa-usrdoc [ 0%] Built target capsul-usrdoc [ 0%] Built target disco-devdoc [ 0%] Built target soma-base-usrdoc [ 0%] Built target bioprocessing-usrdoc [ 0%] Built target neuro-forge-usrdoc [ 0%] Built target aims-gpl-usrdoc [ 0%] Built target soma-workflow-usrdoc [ 0%] Built target brainvisa-share-usrdoc [ 0%] Built target sulci-nonfree-usrdoc [ 0%] Built target disco-usrdoc [ 0%] Built target populse-db-usrdoc [ 0%] Built target highres-cortex-usrdoc [ 0%] Built target brainvisa-spm-usrdoc [ 0%] Built target casa-distro-usrdoc [ 0%] Built target cortical_surface-nonfree-usrdoc [ 0%] Built target morphologist-nonfree-usrdoc [ 0%] Built target soma-io-usrdoc [ 0%] Built target cortical_surface-gpl-usrdoc [ 0%] Built target morpho-deepsulci-usrdoc [ 0%] Built target constellation-gpl-usrdoc [ 0%] Built target brainrat-private-usrdoc [ 0%] Built target anatomist-gpl-usrdoc [ 0%] Create "share/doc/5.2" [ 0%] Built target constellation-nonfree-usrdoc [ 0%] Built target primatologist-gpl-usrdoc [ 0%] Create "share/doc/." [ 0%] Create "share/doc/0.0" [ 0%] Built target vidaIO-doxygen [ 0%] Create "share/doc/5.2" [ 0%] Built target brainvisa_freesurfer-usrdoc [ 0%] Create "share/doc/5.2" [ 0%] Built target ecat-doxygen [ 0%] Create "share/doc/6.0" [ 4%] Built target cartobase-doxygen [ 4%] Create "share/doc/5.2" [ 4%] Built target Brainvisa-devdoc [ 4%] Built target vip-doxygen [ 4%] Built target neuron-doxygen [ 4%] Built target anafold-doxygen [ 4%] Built target neuro-forge-devdoc [ 4%] Built target brainvisa-spm-devdoc [ 4%] Built target brainvisa-share-devdoc [ 4%] Built target aims-gpl-devdoc [ 4%] Built target brainvisa-cmake-devdoc [ 4%] Create "share/doc/5.2" [ 4%] Create "share/doc/5.2" [ 4%] Create "share/doc/5.2" [ 4%] Writing documentation to /casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/doc... [ 4%] Built target Brainvisa-doc [ 4%] Create "share/doc/5.2" [ 4%] Built target aims-free_target_17 [ 9%] Built target soma-io_target_6 [ 9%] Built target soma-io_target_7 [ 9%] Built target aims-free_target_2 [ 9%] Built target brainvisa_freesurfer-devdoc [ 9%] Built target brainrat-gpl-devdoc [ 9%] Built target aims-free_target_10 [ 9%] Built target constellation-gpl-devdoc [ 9%] Built target cortical_surface-gpl-devdoc [ 19%] Built target aims-free_target_16 [ 19%] Built target aims-free_target_14 [ 19%] Built target aims-free_target_13 [ 28%] Built target aims-free_target_31 [ 28%] Built target aims-free_target_23 [ 28%] Built target aims-free_target_18 [ 28%] Built target aims-free_target_32 [ 28%] Built target run_uic [ 28%] Built target highres-cortex_target_7 [ 33%] Built target morphologist-nonfree_target_1 [ 33%] Built target VipPreprocessing [ 33%] Built target morphologist-nonfree_target_2 [ 38%] Built target anatomist-free_target_1 [ 38%] Built target sulci-nonfree_target_1 [ 42%] Built target sulci-nonfree_target_4 [ 42%] Built target brainrat-private_target_7 [ 42%] Built target primatologist-gpl_target_7 [ 42%] Built target brainrat-private_target_6 [ 42%] Built target constellation-nonfree_target_1 [ 42%] Built target brainvisa-spm-doc [ 42%] Built target cortical_surface-nonfree_target_1 [ 42%] Built target bioprocessing_target_9 [ 42%] Built target cortical_surface-gpl-doc [ 42%] Built target constellation-gpl-doc [ 42%] Built target brainvisa_freesurfer-doc [ 42%] Built target disco-doc [ 42%] Built target ecat+-doxygen [ 42%] Built target neuro-forge-doc [ 42%] Built target soma-io-doxygen [ 42%] Create "share/doc/5.2" [ 42%] Built target graph-doxygen [ 42%] Built target brainvisa-share-doc [ 42%] Built target aims-gpl-doc [ 42%] Built target ecat [ 42%] Built target morphologist-nonfree-devdoc [ 42%] Built target vip-generated [ 47%] Built target cartodata-doxygen [ 47%] Built target neuron [ 47%] Built target ecat+ [ 47%] Built target cartobase_0 [ 47%] Built target morphologist-nonfree-doc [ 47%] Built target aimsdata-doxygen [ 47%] Built target neurlearn [ 47%] Built target neurmakenet [ 47%] Built target neurpatimport [ 47%] Built target EcatVolReverse [ 47%] Built target EcatVolMIProj [ 47%] Built target pyaims-doxygen [ 47%] Built target aimsalgo-doxygen [ 47%] Built target cartobase_1 [ 47%] Built target aimsgui-doxygen [ 47%] Built target brainrat-private-doxygen [ 47%] Built target primatologist-gpl-doxygen [ 47%] Built target cortical_surface-doxygen [ 47%] Built target sigraph-doxygen [ 47%] Built target constellation-doxygen [ 47%] Built target highres-cortex-doxygen [ 47%] Built target anatomist-doxygen [ 47%] Built target cartobase [ 47%] Create "share/doc/5.2" [ 47%] Create "share/doc/5.2" [ 47%] Create "share/doc/5.2" [ 47%] Create "share/doc/5.2" [ 47%] Built target bioprocessing-doxygen [ 47%] Create "share/doc/5.2" [ 47%] Create "share/doc/5.2" [ 47%] Built target pyanatomist-doxygen [ 47%] Built target brainrat-private-devdoc [ 47%] Built target cortical_surface-nonfree-devdoc [ 47%] Built target constellation-nonfree-devdoc [ 47%] Built target highres-cortex-devdoc [ 47%] Built target primatologist-gpl-devdoc [ 47%] Built target sulci-nonfree-devdoc [ 47%] Create "share/doc/5.2" [ 47%] Built target brainrat-private-doc [ 47%] Built target soma-io [ 47%] Built target cortical_surface-nonfree-doc Running Sphinx v7.2.6 Running Sphinx v7.2.6 [ 47%] Built target constellation-nonfree-doc [ 47%] Built target bioprocessing-devdoc Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 [ 47%] Built target primatologist-gpl-doc Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 [ 47%] Built target highres-cortex-doc Running Sphinx v7.2.6 Running Sphinx v7.2.6 /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/conf.py:166: SyntaxWarning: invalid escape sequence '\.' '/(%s)\.py' % ')|('.join(gallery_examples), [ 47%] Built target sulci-nonfree-doc Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 Running Sphinx v7.2.6 [ 47%] Built target cartodata [ 47%] Built target graph [ 47%] Built target bioprocessing-doc warning: Tag 'SYMBOL_CACHE_SIZE' at line 295 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 479 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 750 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 805 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1142 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1148 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1313 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1326 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1335 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 1359 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 1364 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1488 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source '/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/example' is not a readable file or directory... skipping. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:500: warning: include file stdint.h not found, perhaps you forgot to add its directory to INCLUDE_PATH? /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:501: warning: missing title after \defgroup NIFTI1_DATATYPES /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:541: warning: missing title after \defgroup NIFTI1_DATATYPE_ALIASES /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:703: warning: missing title after \defgroup NIFTI1_INTENT_CODES /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1189: warning: missing title after \defgroup NIFTI1_XFORM_CODES /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1253: warning: missing title after \defgroup NIFTI1_UNITS /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1394: warning: missing title after \defgroup NIFTI1_SLICE_ORDER /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:36: warning: include file stdint.h not found, perhaps you forgot to add its directory to INCLUDE_PATH? WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:40: warning: Compound cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:65: warning: Compound cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:43: warning: Compound cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:67: warning: Compound cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:61: warning: Compound cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:51: warning: Compound cifti::CiftiBrainModelsMap::SurfaceMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:56: warning: Compound cifti::CiftiBrainModelsMap::VolumeMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:102: warning: Compound cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:111: warning: Compound cifti::CiftiFile::WriteImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:42: warning: Compound cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:38: warning: Compound cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:44: warning: Compound cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:47: warning: Compound cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:40: warning: Compound cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:35: warning: Compound cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:37: warning: Compound cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Compact3DLookup.h:37: warning: Compound cifti::Compact3DLookup is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:39: warning: Compound cifti::CompactLookup is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:76: warning: Compound cifti::CompactLookup::const_iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:48: warning: Compound cifti::CompactLookup::iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:37: warning: Compound cifti::ConstFloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:48: warning: Compound cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:39: warning: Compound cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:44: warning: Compound cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MatrixFunctions.h:42: warning: Compound cifti::MatrixFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:44: warning: Compound cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:40: warning: Compound cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:38: warning: Compound cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:42: warning: Compound cifti::NiftiExtension is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:48: warning: Compound cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:49: warning: Compound cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:97: warning: Compound cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:36: warning: Compound cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:41: warning: Compound cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:35: warning: Compound cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:147: warning: Compound cifti::XmlAttributesResult is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:149: warning: Compound cifti::XmlAttributesResult::OptionalStatus is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.cxx:51: warning: no matching class member found for void CiftiBrainModelsMap::addSurfaceModel(const int64_t &numberOfNodes, const cifti::StructureEnum::Enum &structure, const vector< int64_t > &nodeList) Possible candidates: 'void cifti::CiftiBrainModelsMap::addSurfaceModel(const int64_t &numberOfNodes, const StructureEnum::Enum &structure, const float *roi=NULL)' at line 93 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h 'void cifti::CiftiBrainModelsMap::addSurfaceModel(const int64_t &numberOfNodes, const StructureEnum::Enum &structure, const std::vector< int64_t > &nodeList)' at line 94 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.cxx:236: warning: no matching class member found for void CiftiXML::readXML(const vector< char > &text) Possible candidates: 'void cifti::CiftiXML::readXML(XmlReader &xml)' at line 86 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h 'void cifti::CiftiXML::readXML(const std::vector< char > &text)' at line 87 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.cxx:60: warning: no matching class member found for VolumeSpace::VolumeSpace(int64_t[3] dims[3], const vector< vector< float > > &sform) Possible candidates: 'cifti::VolumeSpace::VolumeSpace()' at line 56 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h 'cifti::VolumeSpace::VolumeSpace(const int64_t dims[3], const std::vector< std::vector< float > > &sform)' at line 57 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h 'cifti::VolumeSpace::VolumeSpace(const int64_t dims[3], const float sform[12])' at line 58 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.cxx:70: warning: no matching class member found for void VolumeSpace::setSpace(int64_t[3] dims[3], const vector< vector< float > > &sform) Possible candidates: 'void cifti::VolumeSpace::setSpace(const int64_t dims[3], const std::vector< std::vector< float > > &sform)' at line 59 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h 'void cifti::VolumeSpace::setSpace(const int64_t dims[3], const float sform[12])' at line 60 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:217: warning: no matching class member found for void CiftiFile::getRow(float *dataOut, const vector< int64_t > &indexSelect, const bool &tolerateShortRead) const Possible candidates: 'void cifti::CiftiFile::getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead=false) const' at line 77 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'void cifti::CiftiFile::getRow(float *dataOut, const int64_t &index, const bool &tolerateShortRead=false) const' at line 96 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::ReadImplInterface::getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead) const =0' at line 105 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:252: warning: no matching class member found for void CiftiFile::setRow(const float *dataIn, const vector< int64_t > &indexSelect) Possible candidates: 'void cifti::CiftiFile::setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)' at line 90 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'void cifti::CiftiFile::setRow(const float *dataIn, const int64_t &index)' at line 99 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::WriteImplInterface::setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)=0' at line 114 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:330: warning: documented symbol 'CiftiMemoryImpl::CiftiMemoryImpl' was not declared or defined. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:336: warning: no uniquely matching class member found for void CiftiMemoryImpl::getRow(float *dataOut, const vector< int64_t > &indexSelect, const bool &) const Possible candidates: 'void cifti::CiftiFile::getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead=false) const' at line 77 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'void cifti::CiftiFile::getRow(float *dataOut, const int64_t &index, const bool &tolerateShortRead=false) const' at line 96 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::ReadImplInterface::getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead) const =0' at line 105 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:346: warning: no uniquely matching class member found for void CiftiMemoryImpl::getColumn(float *dataOut, const int64_t &index) const Possible candidates: 'void cifti::CiftiFile::getColumn(float *dataOut, const int64_t &index) const' at line 87 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::ReadImplInterface::getColumn(float *dataOut, const int64_t &index) const =0' at line 106 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:359: warning: no uniquely matching class member found for void CiftiMemoryImpl::setRow(const float *dataIn, const vector< int64_t > &indexSelect) Possible candidates: 'void cifti::CiftiFile::setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)' at line 90 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'void cifti::CiftiFile::setRow(const float *dataIn, const int64_t &index)' at line 99 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::WriteImplInterface::setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)=0' at line 114 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:369: warning: no uniquely matching class member found for void CiftiMemoryImpl::setColumn(const float *dataIn, const int64_t &index) Possible candidates: 'void cifti::CiftiFile::setColumn(const float *dataIn, const int64_t &index)' at line 93 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::WriteImplInterface::setColumn(const float *dataIn, const int64_t &index)=0' at line 115 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:382: warning: documented symbol 'CiftiOnDiskImpl::CiftiOnDiskImpl' was not declared or defined. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:427: warning: documented symbol 'CiftiOnDiskImpl::CiftiOnDiskImpl' was not declared or defined. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:458: warning: no uniquely matching class member found for void CiftiOnDiskImpl::getRow(float *dataOut, const vector< int64_t > &indexSelect, const bool &tolerateShortRead) const Possible candidates: 'void cifti::CiftiFile::getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead=false) const' at line 77 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'void cifti::CiftiFile::getRow(float *dataOut, const int64_t &index, const bool &tolerateShortRead=false) const' at line 96 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::ReadImplInterface::getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead) const =0' at line 105 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:463: warning: no uniquely matching class member found for void CiftiOnDiskImpl::getColumn(float *dataOut, const int64_t &index) const Possible candidates: 'void cifti::CiftiFile::getColumn(float *dataOut, const int64_t &index) const' at line 87 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::ReadImplInterface::getColumn(float *dataOut, const int64_t &index) const =0' at line 106 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:477: warning: no uniquely matching class member found for void CiftiOnDiskImpl::setRow(const float *dataIn, const vector< int64_t > &indexSelect) Possible candidates: 'void cifti::CiftiFile::setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)' at line 90 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'void cifti::CiftiFile::setRow(const float *dataIn, const int64_t &index)' at line 99 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::WriteImplInterface::setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)=0' at line 114 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:482: warning: no uniquely matching class member found for void CiftiOnDiskImpl::setColumn(const float *dataIn, const int64_t &index) Possible candidates: 'void cifti::CiftiFile::setColumn(const float *dataIn, const int64_t &index)' at line 93 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h 'virtual void cifti::CiftiFile::WriteImplInterface::setColumn(const float *dataIn, const int64_t &index)=0' at line 115 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:51: warning: no matching class member found for FloatMatrix::FloatMatrix(const vector< vector< float > > &matrixIn) Possible candidates: 'cifti::FloatMatrix::FloatMatrix()' at line 68 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h 'cifti::FloatMatrix::FloatMatrix(const std::vector< std::vector< float > > &matrixIn)' at line 70 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h 'cifti::FloatMatrix::FloatMatrix(const int64_t &rows, const int64_t &cols)' at line 72 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:281: warning: no matching class member found for FloatMatrixRowRef::FloatMatrixRowRef(vector< float > &therow) Possible candidates: 'friend class cifti::ConstFloatMatrixRowRef::FloatMatrixRowRef' at line 45 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h 'cifti::FloatMatrixRowRef::FloatMatrixRowRef()' at line 51 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h 'cifti::FloatMatrixRowRef::FloatMatrixRowRef(FloatMatrixRowRef &right)' at line 53 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h 'cifti::FloatMatrixRowRef::FloatMatrixRowRef(std::vector< float > &therow)' at line 54 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:336: warning: no matching class member found for ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const vector< float > &therow) Possible candidates: 'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef()' at line 40 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h 'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const ConstFloatMatrixRowRef &right)' at line 42 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h 'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const std::vector< float > &therow)' at line 43 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.cxx:35: warning: no matching file member found for XmlAttributesResult cifti::XmlReader_parseAttributes(XmlReader &xml, const vector< AString > &mandatoryNames, const vector< AString > &optionalNames) Possible candidates: 'XmlAttributesResult XmlReader_parseAttributes(XmlReader &xml, const std::vector< AString > &mandatoryNames, const std::vector< AString > &optionalNames=std::vector< AString >())' at line 162 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h [ 52%] Built target aimsdata loading pickled environment... loading pickled environment... [ 52%] Built target AimsConnectComp [ 52%] Built target AimsAverage [ 52%] Built target AimsFileInfo [ 52%] Built target AimsFileConvert [ 52%] Built target AimsFiberOversampler [ 52%] Built target AimsChannelExtract [ 52%] Built target DiscoFFDMetrics [ 52%] Built target AimsComposeTransformation loading pickled environment... /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:506: warning: Member DT_NONE (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:507: warning: Member DT_UNKNOWN (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:508: warning: Member DT_BINARY (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:509: warning: Member DT_UNSIGNED_CHAR (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:510: warning: Member DT_SIGNED_SHORT (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:511: warning: Member DT_SIGNED_INT (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:512: warning: Member DT_FLOAT (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:513: warning: Member DT_COMPLEX (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:514: warning: Member DT_DOUBLE (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:515: warning: Member DT_RGB (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:516: warning: Member DT_ALL (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:519: warning: Member DT_UINT8 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:520: warning: Member DT_INT16 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:521: warning: Member DT_INT32 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:522: warning: Member DT_FLOAT32 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:523: warning: Member DT_COMPLEX64 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:524: warning: Member DT_FLOAT64 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:525: warning: Member DT_RGB24 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:528: warning: Member DT_INT8 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:529: warning: Member DT_UINT16 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:530: warning: Member DT_UINT32 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:531: warning: Member DT_INT64 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:532: warning: Member DT_UINT64 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:533: warning: Member DT_FLOAT128 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:534: warning: Member DT_COMPLEX128 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:535: warning: Member DT_COMPLEX256 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:707: warning: Member NIFTI_INTENT_CORREL (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:895: warning: Member NIFTI_INTENT_VECTOR (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1288: warning: Member XYZT_TO_SPACE(xyzt) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1289: warning: Member XYZT_TO_TIME(xyzt) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1292: warning: Member SPACE_TIME_TO_XYZT(ss, tt) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1385: warning: Member DIM_INFO_TO_FREQ_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1386: warning: Member DIM_INFO_TO_PHASE_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1387: warning: Member DIM_INFO_TO_SLICE_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1390: warning: Member FPS_INTO_DIM_INFO(fd, pd, sd) (macro definition) of group NIFTI1_UNITS is not documented. done /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:306: warning: Member extension[4] (variable) of struct cifti::nifti1_extender is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1399: warning: Member NIFTI_SLICE_UNKNOWN (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1400: warning: Member NIFTI_SLICE_SEQ_INC (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1401: warning: Member NIFTI_SLICE_SEQ_DEC (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1402: warning: Member NIFTI_SLICE_ALT_INC (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1403: warning: Member NIFTI_SLICE_ALT_DEC (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1404: warning: Member NIFTI_SLICE_ALT_INC2 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1405: warning: Member NIFTI_SLICE_ALT_DEC2 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:225: warning: Member nifti_1_header (typedef) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:307: warning: Member nifti1_extender (typedef) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:317: warning: Member nifti1_extension (typedef) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:117: warning: Member nifti_2_header (typedef) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:116: warning: Member AString_split(const AString &input, const char &delim) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:117: warning: Member AString_split_whitespace(const AString &input) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:118: warning: Member AString_toInt(const AString &input, bool &ok) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:119: warning: Member AString_toFloat(const AString &input, bool &ok) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:69: warning: Member operator*(const float &left, const Vector3D &right) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:159: warning: Member XmlReader_readElementText(XmlReader &xml) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:160: warning: Member XmlReader_readNextStartElement(XmlReader &xml) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:161: warning: Member XmlReader_elementName(XmlReader &xml) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:162: warning: Member XmlReader_parseAttributes(XmlReader &xml, const std::vector< AString > &mandatoryNames, const std::vector< AString > &optionalNames=std::vector< AString >()) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:163: warning: Member XmlReader_checkEndElement(XmlReader &xml, const AString &elementName) (function) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:506: warning: Member DT_NONE (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:507: warning: Member DT_UNKNOWN (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:508: warning: Member DT_BINARY (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:509: warning: Member DT_UNSIGNED_CHAR (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:510: warning: Member DT_SIGNED_SHORT (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:511: warning: Member DT_SIGNED_INT (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:512: warning: Member DT_FLOAT (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:513: warning: Member DT_COMPLEX (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:514: warning: Member DT_DOUBLE (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:515: warning: Member DT_RGB (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:516: warning: Member DT_ALL (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:519: warning: Member DT_UINT8 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:520: warning: Member DT_INT16 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:521: warning: Member DT_INT32 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:522: warning: Member DT_FLOAT32 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:523: warning: Member DT_COMPLEX64 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:524: warning: Member DT_FLOAT64 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:525: warning: Member DT_RGB24 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:528: warning: Member DT_INT8 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:529: warning: Member DT_UINT16 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:530: warning: Member DT_UINT32 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:531: warning: Member DT_INT64 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:532: warning: Member DT_UINT64 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:533: warning: Member DT_FLOAT128 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:534: warning: Member DT_COMPLEX128 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:535: warning: Member DT_COMPLEX256 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:707: warning: Member NIFTI_INTENT_CORREL (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:895: warning: Member NIFTI_INTENT_VECTOR (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1399: warning: Member NIFTI_SLICE_UNKNOWN (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1400: warning: Member NIFTI_SLICE_SEQ_INC (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1401: warning: Member NIFTI_SLICE_SEQ_DEC (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1402: warning: Member NIFTI_SLICE_ALT_INC (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1403: warning: Member NIFTI_SLICE_ALT_DEC (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1404: warning: Member NIFTI_SLICE_ALT_INC2 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1405: warning: Member NIFTI_SLICE_ALT_DEC2 (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:38: warning: Member NIFTI_INTENT_CONNECTIVITY_UNKNOWN (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:39: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:40: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_TIME (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:41: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_SERIES (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:42: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:43: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_TIME (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:44: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_SERIES (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:45: warning: Member NIFTI_INTENT_CONNECTIVITY_CONNECTIVITY_TRAJECTORY (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:46: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_TRAJECTORY (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:47: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_SCALARS (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:48: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_LABELS (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:49: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_SCALAR (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:50: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_DENSE (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:51: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_PARCELLATED (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:52: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_PARCELLATED_SERIES (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:53: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_PARCELLATED_SCALAR (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:55: warning: Member NIFTI_ECODE_CIFTI (variable) of namespace cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:43: warning: Member OpenMode (enumeration) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:56: warning: Member open(const AString &filename, const OpenMode &opmode=READ) (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:57: warning: Member close() (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:58: warning: Member getFilename() const (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:59: warning: Member getOpenForRead() (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:60: warning: Member getOpenForWrite() (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:61: warning: Member seek(const int64_t &position) (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:62: warning: Member pos() (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:63: warning: Member read(void *dataOut, const int64_t &count, int64_t *numRead=NULL) (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:64: warning: Member write(const void *dataIn, const int64_t &count) (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:70: warning: Member open(const AString &filename, const OpenMode &opmode)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:71: warning: Member close()=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:72: warning: Member getFilename() const (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:73: warning: Member seek(const int64_t &position)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:74: warning: Member pos()=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:75: warning: Member read(void *dataOut, const int64_t &count, int64_t *numRead)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. [ 52%] Built target AimsGraphConvert /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:76: warning: Member write(const void *dataIn, const int64_t &count)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:68: warning: Member m_fileName (variable) of class cifti::BinaryFile::ImplInterface is not documented. [ 52%] Built target AimsGraphComplete /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:43: warning: Member swap(T &toSwap) (function) of class cifti::ByteSwapping is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:46: warning: Member swapArray(T *toSwap, const uint64_t &count) (function) of class cifti::ByteSwapping is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:48: warning: Member isBigEndian() (function) of class cifti::ByteSwapping is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:46: warning: Member ModelType (enumeration) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:74: warning: Member hasVolumeData() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:75: warning: Member hasVolumeData(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:76: warning: Member hasSurfaceData(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:77: warning: Member getIndexForNode(const int64_t &node, const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:78: warning: Member getIndexForVoxel(const int64_t *ijk, StructureEnum::Enum *structureOut=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:79: warning: Member getIndexForVoxel(const int64_t &i, const int64_t &j, const int64_t &k, StructureEnum::Enum *structureOut=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:80: warning: Member getInfoForIndex(const int64_t index) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:81: warning: Member getSurfaceMap(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:82: warning: Member getFullVolumeMap() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:83: warning: Member getVolumeStructureMap(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:84: warning: Member getVolumeSpace() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:85: warning: Member getSurfaceNumberOfNodes(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:86: warning: Member getSurfaceStructureList() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:87: warning: Member getVolumeStructureList() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:88: warning: Member getNodeList(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:89: warning: Member getVoxelList(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:90: warning: Member getModelInfo() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:93: warning: Member addSurfaceModel(const int64_t &numberOfNodes, const StructureEnum::Enum &structure, const float *roi=NULL) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:94: warning: Member addSurfaceModel(const int64_t &numberOfNodes, const StructureEnum::Enum &structure, const std::vector< int64_t > &nodeList) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:95: warning: Member addVolumeModel(const StructureEnum::Enum &structure, const std::vector< int64_t > &ijkList) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:96: warning: Member setVolumeSpace(const VolumeSpace &space) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:97: warning: Member clear() (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:99: warning: Member clone() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:100: warning: Member getType() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:101: warning: Member getLength() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:102: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:103: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:104: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:105: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:106: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:107: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. building [mo]: targets for 0 po files that are out of date writing output... /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:69: warning: Member m_type (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:70: warning: Member m_structure (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:71: warning: Member m_surfaceNode (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:72: warning: Member m_ijk[3] (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:63: warning: Member m_type (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:64: warning: Member m_structure (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:65: warning: Member m_indexStart (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:65: warning: Member m_indexCount (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:53: warning: Member m_ciftiIndex (variable) of struct cifti::CiftiBrainModelsMap::SurfaceMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:54: warning: Member m_surfaceNode (variable) of struct cifti::CiftiBrainModelsMap::SurfaceMap is not documented. [ 52%] Built target AimsGraphMerge [ 52%] Built target AimsFlip [ 52%] Built target AimsInvertTransformation /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:58: warning: Member m_ciftiIndex (variable) of struct cifti::CiftiBrainModelsMap::VolumeMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:59: warning: Member m_ijk[3] (variable) of struct cifti::CiftiBrainModelsMap::VolumeMap is not documented. building [html]: targets for 0 source files that are out of date updating environment: /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:48: warning: Member ENDIAN (enumeration) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:73: warning: Member getCiftiXML() const (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:74: warning: Member isInMemory() const (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:78: warning: Member getDimensions() const (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:89: warning: Member setCiftiXML(const CiftiXML &xml, const bool useOldMetadata=true) (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:90: warning: Member setRow(const float *dataIn, const std::vector< int64_t > &indexSelect) (function) of class cifti::CiftiFile is not documented. 0 added, 1 changed, 0 removed reading sources... [100%] populse_db/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:105: warning: Member getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:106: warning: Member getColumn(float *dataOut, const int64_t &index) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:107: warning: Member isInMemory() const (function) of class cifti::CiftiFile::ReadImplInterface is not documented. [ 52%] Built target AimsGraphExtractTransformation /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:114: warning: Member setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)=0 (function) of class cifti::CiftiFile::WriteImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:115: warning: Member setColumn(const float *dataIn, const int64_t &index)=0 (function) of class cifti::CiftiFile::WriteImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:105: warning: Member getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:106: warning: Member getColumn(float *dataOut, const int64_t &index) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:107: warning: Member isInMemory() const (function) of class cifti::CiftiFile::ReadImplInterface is not documented. [ 52%] Built target AimsMerge2Rgb /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:45: warning: Member getMapMetadata(const int64_t &index) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:46: warning: Member getMapLabelTable(const int64_t &index) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:47: warning: Member getMapName(const int64_t &index) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:49: warning: Member setMapMetadata(const int64_t &index, const MetaData &md) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:50: warning: Member setMapLabelTable(const int64_t &index, const LabelTable &lt) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:51: warning: Member setMapName(const int64_t &index, const AString &mapName) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:52: warning: Member setLength(const int64_t &length) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:53: warning: Member clear() (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:55: warning: Member clone() const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:56: warning: Member getType() const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:57: warning: Member getLength() const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:58: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:59: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:60: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:61: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:62: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:63: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:49: warning: Member clone() const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:50: warning: Member getType() const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:51: warning: Member getLength() const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:52: warning: Member operator==(const CiftiMappingType &rhs) const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:54: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:55: warning: Member readXML1(XmlReader &xml)=0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:56: warning: Member readXML2(XmlReader &xml)=0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:57: warning: Member writeXML1(XmlWriter &xml) const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:58: warning: Member writeXML2(XmlWriter &xml) const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:56: warning: Member hasVolumeData() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:57: warning: Member hasSurface(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:58: warning: Member hasSurfaceData(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:59: warning: Member getVolumeSpace() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:60: warning: Member getSurfaceNumberOfNodes(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:61: warning: Member getIndexForNode(const int64_t &node, const StructureEnum::Enum &structure) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:62: warning: Member getIndexForVoxel(const int64_t *ijk) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:63: warning: Member getIndexForVoxel(const int64_t &i, const int64_t &j, const int64_t &k) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:64: warning: Member getParcelSurfaceStructures() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:65: warning: Member getParcels() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:68: warning: Member addSurface(const int64_t &numberOfNodes, const StructureEnum::Enum &structure) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:69: warning: Member setVolumeSpace(const VolumeSpace &space) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:70: warning: Member addParcel(const Parcel &parcel) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:71: warning: Member clear() (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:73: warning: Member clone() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:74: warning: Member getType() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:75: warning: Member getLength() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:76: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:77: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:78: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:79: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:80: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:81: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. [ 52%] Built target AimsMassCenter /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:52: warning: Member operator==(const Parcel &rhs) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:53: warning: Member operator!=(const Parcel &rhs) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:54: warning: Member approximateMatch(const Parcel &rhs, AString *explanation=NULL) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:49: warning: Member m_surfaceNodes (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:50: warning: Member m_voxelIndices (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:51: warning: Member m_name (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:44: warning: Member CiftiScalarsMap(const CiftiScalarsMap &rhs) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:45: warning: Member operator=(const CiftiScalarsMap &rhs) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:46: warning: Member CiftiScalarsMap(const int64_t &length) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:48: warning: Member getMapMetadata(const int64_t &index) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:49: warning: Member getMapName(const int64_t &index) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:51: warning: Member setMapMetadata(const int64_t &index, const MetaData &mdIn) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:52: warning: Member setMapName(const int64_t &index, const AString &mapName) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:53: warning: Member setLength(const int64_t &length) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:54: warning: Member clear() (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:56: warning: Member clone() const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:57: warning: Member getType() const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:58: warning: Member getLength() const (function) of class cifti::CiftiScalarsMap is not documented. done /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:59: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:60: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:61: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:62: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:63: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:64: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:38: warning: Member Unit (enumeration) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:45: warning: Member getStart() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:46: warning: Member getStep() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:47: warning: Member getUnit() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:56: warning: Member CiftiSeriesMap(const int64_t &length, const float &start=0.0f, const float &step=1.0f, const Unit &unit=SECOND) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:63: warning: Member setStart(const float &start) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:64: warning: Member setStep(const float &step) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:65: warning: Member setUnit(const Unit &unit) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:66: warning: Member setLength(const int64_t &length) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:72: warning: Member clone() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:73: warning: Member getType() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:74: warning: Member getLength() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:75: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:84: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:101: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:102: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:103: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:104: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:68: warning: Member stringToUnit(const AString &string, bool &ok) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:69: warning: Member unitToString(const Unit &theUnit) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:70: warning: Member getAllUnits() (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:41: warning: Member getMajor() const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:42: warning: Member getMinor() const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:45: warning: Member CiftiVersion(const int16_t &major, const int16_t &minor) (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:46: warning: Member CiftiVersion(const AString &versionString) (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:47: warning: Member toString() const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:48: warning: Member operator<(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:49: warning: Member operator>(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:50: warning: Member operator==(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:51: warning: Member operator!=(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:52: warning: Member operator<=(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:53: warning: Member operator>=(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:57: warning: Member getNumberOfDimensions() const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:58: warning: Member getParsedVersion() const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:65: warning: Member getFileMetaData() const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:67: warning: Member getMappingType(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:68: warning: Member getBrainModelsMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:69: warning: Member getBrainModelsMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:70: warning: Member getLabelsMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:71: warning: Member getLabelsMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:72: warning: Member getParcelsMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:73: warning: Member getParcelsMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:74: warning: Member getScalarsMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:75: warning: Member getScalarsMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:76: warning: Member getSeriesMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:77: warning: Member getSeriesMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:78: warning: Member getDimensionLength(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:79: warning: Member getDimensions() const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:81: warning: Member setNumberOfDimensions(const int &num) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:82: warning: Member setMap(const int &direction, const CiftiMappingType &mapIn) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:83: warning: Member setFileMetaData(const MetaData &mdIn) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:84: warning: Member clear() (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:86: warning: Member readXML(XmlReader &xml) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:87: warning: Member readXML(const std::vector< char > &text) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:89: warning: Member writeXMLToVector(const CiftiVersion &writingVersion=CiftiVersion()) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:90: warning: Member writeXML(XmlWriter &xml, const CiftiVersion &writingVersion=CiftiVersion()) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:96: warning: Member CiftiXML(const CiftiXML &rhs) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:97: warning: Member operator=(const CiftiXML &rhs) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:98: warning: Member operator==(const CiftiXML &rhs) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:99: warning: Member operator!=(const CiftiXML &rhs) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:100: warning: Member approximateMatch(const CiftiXML &rhs) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:110: warning: Member end() (function) of class cifti::CompactLookup is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:111: warning: Member end() const (function) of class cifti::CompactLookup is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:83: warning: Member operator==(const const_iterator &rhs) const (function) of class cifti::CompactLookup::const_iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:90: warning: Member operator*() (function) of class cifti::CompactLookup::const_iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:96: warning: Member operator->() (function) of class cifti::CompactLookup::const_iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:55: warning: Member operator==(const iterator &rhs) const (function) of class cifti::CompactLookup::iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:62: warning: Member operator*() (function) of class cifti::CompactLookup::iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:68: warning: Member operator->() (function) of class cifti::CompactLookup::iterator is not documented. loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:42: warning: Member ConstFloatMatrixRowRef(const ConstFloatMatrixRowRef &right) (function) of class cifti::ConstFloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:43: warning: Member ConstFloatMatrixRowRef(const std::vector< float > &therow) (function) of class cifti::ConstFloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:44: warning: Member operator[](const int64_t &index) (function) of class cifti::ConstFloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:73: warning: Member operator[](const int64_t &index) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:74: warning: Member operator[](const int64_t &index) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:75: warning: Member operator+=(const FloatMatrix &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:76: warning: Member operator-=(const FloatMatrix &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:77: warning: Member operator*=(const FloatMatrix &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:78: warning: Member operator+=(const float &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:79: warning: Member operator-=(const float &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:80: warning: Member operator*=(const float &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:81: warning: Member operator/=(const float &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:82: warning: Member operator+(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:83: warning: Member operator-(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:84: warning: Member operator-() const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:85: warning: Member operator*(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:86: warning: Member operator==(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:87: warning: Member operator!=(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:53: warning: Member FloatMatrixRowRef(FloatMatrixRowRef &right) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:54: warning: Member FloatMatrixRowRef(std::vector< float > &therow) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:55: warning: Member operator=(const FloatMatrixRowRef &right) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:56: warning: Member operator=(const ConstFloatMatrixRowRef &right) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:57: warning: Member operator=(const float &right) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:58: warning: Member operator[](const int64_t &index) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:82: warning: Member Label(const Label &gl) (function) of class cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:85: warning: Member operator=(const Label &gl) (function) of class cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:95: warning: Member hashCode() (function) of class cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:133: warning: Member matches(const Label &rhs, const bool checkColor=false) const (function) of class cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:49: warning: Member LabelTable(const LabelTable &glt) (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:51: warning: Member operator=(const LabelTable &glt) (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:53: warning: Member matches(const LabelTable &rhs, const bool checkColors=false) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:55: warning: Member operator==(const LabelTable &rhs) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:57: warning: Member operator!=(const LabelTable &rhs) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:148: warning: Member createLabelsForKeys(const std::set< int32_t > &newKeys) (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:150: warning: Member writeXML(XmlWriter &xmlWriter) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:152: warning: Member readXml(XmlReader &xml) (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:156: warning: Member getKeys(std::vector< int32_t > &keysOut) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:131: warning: Member addVectors(const float v1[3], const float v2[3], float resultOut[3]) (function) of class cifti::MathFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:261: warning: Member isNaN(const float number) (function) of class cifti::MathFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:263: warning: Member isPosInf(const float number) (function) of class cifti::MathFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:265: warning: Member isNegInf(const float number) (function) of class cifti::MathFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1079: warning: The following parameter of cifti::MathFunctions::arraysEqual(const float a[], const float b[], const int32_t numElements) is not documented: parameter 'numElements' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1263: warning: The following parameter of cifti::MathFunctions::compareArrays(const float a1[], const float a2[], const int32_t numElements, const float tolerance) is not documented: parameter 'numElements' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'X' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'Y' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'X' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'Y' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: The following parameters of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) are not documented: parameter 'x1' parameter 'y1' parameter 'x2' parameter 'y2' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:285: warning: The following parameter of cifti::MathFunctions::normalizedCrossProduct(const float x1[], const float x2[], float resultOut[]) is not documented: parameter 'resultOut' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:285: warning: found documented return type for cifti::MathFunctions::normalizedCrossProduct that does not return anything /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:352: warning: argument 'vectorInOut' of command @param is not found in the argument list of cifti::MathFunctions::normalizeVector(double vector[3]) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:352: warning: The following parameter of cifti::MathFunctions::normalizeVector(double vector[3]) is not documented: parameter 'vector' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:333: warning: argument 'vectorInOut' of command @param is not found in the argument list of cifti::MathFunctions::normalizeVector(float vector[3]) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:333: warning: The following parameter of cifti::MathFunctions::normalizeVector(float vector[3]) is not documented: parameter 'vector' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:216: warning: The following parameter of cifti::MathFunctions::normalVectorDirection(const float v1[3], const float v2[3], const float v3[3], float directionOut[3]) is not documented: parameter 'directionOut' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:216: warning: found documented return type for cifti::MathFunctions::normalVectorDirection that does not return anything /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:50: warning: Member MetaData(const MetaData &o) (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:52: warning: Member operator=(const MetaData &o) (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:54: warning: Member operator==(const MetaData &rhs) const (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:56: warning: Member operator!=(const MetaData &rhs) const (function) of class cifti::MetaData is not documented. [ 52%] Built target AimsMeshArea /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:94: warning: Member writeCiftiXML1(XmlWriter &xmlWriter) const (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:95: warning: Member writeCiftiXML2(XmlWriter &xmlWriter) const (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:96: warning: Member readCiftiXML1(XmlReader &xml) (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:97: warning: Member readCiftiXML2(XmlReader &xml) (function) of class cifti::MetaData is not documented. [ 52%] Built target AimsMeshCut [ 52%] Built target AimsMeshes2Graph /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:47: warning: Member getDimensions() const (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:49: warning: Member resize(const std::vector< I > &dims) (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:51: warning: Member at(const std::vector< I > &pos) (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:53: warning: Member at(const std::vector< I > &pos) const (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:55: warning: Member get(const int &fullDims, const std::vector< I > &indexSelect) (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:57: warning: Member get(const int &fullDims, const std::vector< I > &indexSelect) const (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:45: warning: Member MultiDimIterator(const std::vector< T > &dimensions) (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:46: warning: Member operator++() (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:47: warning: Member operator++(int) (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:48: warning: Member operator--() (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:49: warning: Member operator--(int) (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:50: warning: Member operator*() const (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:51: warning: Member atEnd() const (function) of class cifti::MultiDimIterator is not documented. [ 52%] Built target AimsMergeLabel [ 52%] Built target AimsMeshGenerate /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:306: warning: Member extension[4] (variable) of struct cifti::nifti1_extender is not documented. done [ 52%] Built target AimsMeshTransform [ 52%] Built target AimsOverVolume [ 52%] Built target AimsRemoveNaN /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:44: warning: Member m_ecode (variable) of struct cifti::NiftiExtension is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:45: warning: Member m_bytes (variable) of struct cifti::NiftiExtension is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:53: warning: Member read(BinaryFile &inFile) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:54: warning: Member write(BinaryFile &outFile, const int &version=1, const bool &swapEndian=false) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:55: warning: Member canWriteVersion(const int &version) const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:56: warning: Member isSwapped() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:57: warning: Member version() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:59: warning: Member getDimensions() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:60: warning: Member getSForm() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:61: warning: Member getDataOffset() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:62: warning: Member getDataType() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:63: warning: Member getIntentCode() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:64: warning: Member getIntentName() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:65: warning: Member getDataScaling(double &mult, double &offset) const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:66: warning: Member toString() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:68: warning: Member setDimensions(const std::vector< int64_t > &dimsIn) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:69: warning: Member setSForm(const std::vector< std::vector< float > > &sForm) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:70: warning: Member setIntent(const int32_t &code, const char name[16]) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:71: warning: Member setDataType(const int16_t &type) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:72: warning: Member clearDataScaling() (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:73: warning: Member setDataScaling(const double &mult, const double &offset) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:77: warning: Member operator==(const NiftiHeader &rhs) const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:78: warning: Member operator!=(const NiftiHeader &rhs) const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:50: warning: Member m_extensions (variable) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:62: warning: Member openRead(const AString &filename) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:63: warning: Member writeNew(const AString &filename, const NiftiHeader &header, const int &version=1, const bool &withRead=false, const bool &swapEndian=false) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:64: warning: Member getFilename() const (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:65: warning: Member overrideDimensions(const std::vector< int64_t > &newDims) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:66: warning: Member close() (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:67: warning: Member getHeader() const (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:68: warning: Member getDimensions() const (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:69: warning: Member getNumComponents() const (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:73: warning: Member readData(T *dataOut, const int &fullDims, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead=false) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:75: warning: Member writeData(const T *dataIn, const int &fullDims, const std::vector< int64_t > &indexSelect) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:103: warning: Member open(const AString &filename, const BinaryFile::OpenMode &opmode) (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:104: warning: Member close() (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:105: warning: Member seek(const int64_t &position) (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:106: warning: Member pos() (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:107: warning: Member read(void *dataOut, const int64_t &count, int64_t *numRead) (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:108: warning: Member write(const void *dataIn, const int64_t &count) (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:72: warning: Member getFilename() const (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:68: warning: Member m_fileName (variable) of class cifti::BinaryFile::ImplInterface is not documented. [autosummary] generating autosummary for: api.rst, index.rst /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:41: warning: Member dot(const Vector3D &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:42: warning: Member cross(const Vector3D &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:43: warning: Member normal(float *origLength=NULL) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:44: warning: Member length() const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:45: warning: Member lengthsquared() const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:48: warning: Member Vector3D(const float &x, const float &y, const float &z) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:49: warning: Member Vector3D(const float *right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:51: warning: Member operator[](const int64_t &index) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:52: warning: Member operator[](const int64_t &index) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:53: warning: Member operator[](const int32_t &index) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:54: warning: Member operator[](const int32_t &index) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:55: warning: Member operator=(const float *right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:57: warning: Member operator+=(const Vector3D &right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:58: warning: Member operator-=(const Vector3D &right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:59: warning: Member operator*=(const float &right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:60: warning: Member operator/=(const float &right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:61: warning: Member operator+(const Vector3D &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:62: warning: Member operator-(const Vector3D &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:63: warning: Member operator-() const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:64: warning: Member operator*(const float &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:65: warning: Member operator/(const float &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:66: warning: Member operator float *() (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:47: warning: Member OrientTypes (enumeration) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:57: warning: Member VolumeSpace(const int64_t dims[3], const std::vector< std::vector< float > > &sform) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:58: warning: Member VolumeSpace(const int64_t dims[3], const float sform[12]) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:59: warning: Member setSpace(const int64_t dims[3], const std::vector< std::vector< float > > &sform) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:60: warning: Member setSpace(const int64_t dims[3], const float sform[12]) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:61: warning: Member getDims() const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:62: warning: Member getSform() const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:63: warning: Member getSpacingVectors(Vector3D &iStep, Vector3D &jStep, Vector3D &kStep, Vector3D &origin) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:64: warning: Member matchesVolumeSpace(const VolumeSpace &right) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:65: warning: Member operator==(const VolumeSpace &right) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:66: warning: Member operator!=(const VolumeSpace &right) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:115: warning: Member indexValid(const T *indexIn) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:129: warning: Member getIndex(const int64_t &indexIn1, const int64_t &indexIn2, const int64_t &indexIn3) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:135: warning: Member getIndex(const T *indexIn) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:140: warning: Member readCiftiXML1(XmlReader &xml) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:141: warning: Member readCiftiXML2(XmlReader &xml) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:142: warning: Member writeCiftiXML1(XmlWriter &xml) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:143: warning: Member writeCiftiXML2(XmlWriter &xml) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:39: warning: Member VoxelIJK(int64_t i, int64_t j, int64_t k) (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:41: warning: Member VoxelIJK(const T ijk[3]) (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:46: warning: Member operator<(const VoxelIJK &rhs) const (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:54: warning: Member operator==(const VoxelIJK &rhs) const (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:60: warning: Member operator!=(const VoxelIJK &rhs) const (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:37: warning: Member m_ijk[3] (variable) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:155: warning: Member mandatoryVals (variable) of struct cifti::XmlAttributesResult is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:156: warning: Member optionalVals (variable) of struct cifti::XmlAttributesResult is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:152: warning: Member present (variable) of struct cifti::XmlAttributesResult::OptionalStatus is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:153: warning: Member value (variable) of struct cifti::XmlAttributesResult::OptionalStatus is not documented. [ 52%] Built target AimsRoiFeatures [ 52%] Built target AimsSubVolume [ 52%] Built target AimsSelectLabel [ 52%] Built target AimsSplitRgb [ 52%] Built target AimsTex2Graph [ 52%] Built target AimsSetMinf [ 52%] Built target AimsSumSparseMatrix [ 52%] Built target AimsTCat [ 52%] Built target AimsTex2Vol [ 52%] Built target AimsVolumeExtract [ 52%] Built target AimsVectorFieldToMesh [ 52%] Built target AimsThreshold [ 52%] Built target aimstiff [ 57%] Built target aimsalgo [ 57%] Built target AimsBundleAnalysis [ 57%] Built target doxygen [ 57%] Built target AimsBundle2Vol [ 57%] Built target aimsecat [ 57%] Built target AimsMeshWhite [ 57%] Built target AimsRTiff [ 57%] Built target AimsActivPixel2Volume [ 57%] Built target Aims3DPointCloud [ 57%] Built target AimsAddNoise2Data [ 57%] Built target aimsgui [ 57%] Built target AimsApplyTransform [ 57%] Built target AimsApplyVectorField [ 57%] Built target AimsBuildDti [ 57%] Built target AimsBvalue [ 57%] Built target highres-cortex [ 57%] Built target AimsChamferDistanceMap [ 57%] Built target AimsClusterArg [ 57%] Built target AimsBuildIndex [ 57%] Built target AimsConvexHull [ 57%] Built target AimsT2BasedCorrectionEpi [ 57%] Built target AimsCorrectionEpi [ 57%] Built target AimsCreateTexture WARNING: Failed to import soma.crypt. Possible hints: * AttributeError: module 'soma' has no attribute 'crypt' * ModuleNotFoundError: No module named 'Crypto' [ 57%] Built target AimsCurvature2d [ 57%] Built target AimsCylinder [ 57%] Built target AimsCurvature3d [ 57%] Built target AimsDanielssonDist building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: [ 57%] Built target AimsElevationMap 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../../share/doc/soma-workflow-3.3/sphinx. [ 57%] Built target AimsGaussianSmoothing1d [ 57%] Built target AimsFrontDistanceMap [ 57%] Built target AimsGaussianSmoothing [ 57%] Built target AimsCompareSPMtToPrimalSketch [ 57%] Built target AimsFoldArgAtt [ 57%] Built target AimsGraphTransferLabels [ 57%] Built target AimsGraphMesh [ 57%] Built target AimsHippocampicReferential [ 57%] Built target AimsGTMDump [ 57%] Built target AimsIcmSpaghetti [ 57%] Built target AimsIcmSpaghettiN [ 57%] Built target AimsImageGLBlobStats [ 57%] Built target AimsIcosaList [ 57%] Built target AimsImageSmoothing [ 57%] Built target AimsImagePrimalSketch [ 57%] Built target AimsImageScaleSpace [ 57%] Built target AimsParameterize2DImageDomain [ 57%] Built target AimsLightenAtlas [ 57%] Built target AimsInflate [ 57%] Built target AimsMask [ 57%] Built target AimsMeanCurvFlow [ 57%] Built target AimsMedianSmoothing [ 57%] Built target AimsSmoothing [ 57%] Built target AimsMerge [ 57%] Built target AimsMesh [ 57%] Built target AimsMesh2Ascii [ 57%] Built target AimsMeshAverage [ 57%] Built target AimsMeshBlobExtract [ 57%] Built target AimsMesh2Sphere [ 57%] Built target AimsMesh2SSGraph [ 57%] Built target AimsMeshBrain [ 57%] Built target AimsMeshCleaner [ 57%] Built target AimsMeshCC2Arg [ 57%] Built target AimsMeshCheckClosed [ 57%] Built target AimsMeshCurvature [ 57%] Built target AimsMeshConnectedComponent [ 57%] Built target AimsMeshDecimation [ 57%] Built target AimsMeshDistance [ 57%] Built target AimsMeshGeodesicDepth [ 57%] Built target AimsMeshLineMeasurement [ 57%] Built target AimsMIRegister [ 57%] Built target AimsMeshSmoothing [ 57%] Built target AimsMeshParcellation2VolumeParcellation [ 57%] Built target AimsMoment [ 57%] Built target AimsNormWithRegion [ 57%] Built target AimsMorphoMath [ 57%] Built target AimsParamCorrectDti [ 57%] Built target AimsPCAloc2 [ 57%] Built target AimsPCAloc [ 57%] Built target AimsPCAfilter [ 57%] Built target AimsRefineMesh [ 57%] Built target AimsRegisterFFDFromCoordImages [ 57%] Built target AimsRegisterBMEstimate [ 57%] Built target AimsRegisterFFDApply [ 57%] Built target AimsSegmentsToMesh [ 57%] Built target AimsSphereDistribution [ 57%] Built target AimsSplitArray [ 57%] Built target AimsSNR [ 57%] Built target AimsReplaceLevel [ 57%] Built target AimsSubSampling [ 57%] Built target AimsSubTensor [ 57%] Built target AimsSulcusSPAM [ 57%] Built target AimsSumFrame [ 57%] Built target AimsTMStarget [ 57%] Built target AimsTalairachTransform [ 57%] Built target AimsTensorExtract [ 57%] Built target AimsTexture2Primal [ 57%] Built target AimsTextureAverage [ 57%] Built target AimsTextureDerivative [ 57%] Built target AimsTensorSNR [ 57%] Built target AimsTextureRegularization [ 57%] Built target AimsTextureDilation [ 57%] Built target AimsTextureErosion [ 61%] Built target AimsTexturePrimalSketch [ 61%] Built target AimsTextureScaleSpace [ 61%] Built target AimsTextureSmoothing [ 61%] Built target AimsTextureThreshold [ 61%] Built target AimsTopologicalClassification [ 61%] Built target AimsVoiStat [ 61%] Built target AimsTextureVoronoi [ 61%] Built target AimsVFilter [ 61%] Built target AimsVeinExtraction [ 61%] Built target AimsVol2Tex [ 61%] Built target AimsValidateFit [ 61%] Built target AimsVoronoi [ 61%] Built target AimsFovSplit [ 61%] Built target AimsZCat [ 61%] Built target soma-workflow-sphinx [ 61%] Built target AimsSumPETFrame [ 61%] Built target AimsSiemensEPI2Volume [ 61%] Built target AimsAttributedViewer [ 61%] Built target AimsRegisterFFDEstimate [ 61%] Built target AimsLabelSelector [ 61%] Built target AimsBundleSelectCenter [ 61%] Built target mkhierarchy-anatomist [ 61%] Built target ylIsoCurvature WARNING: autodoc: failed to import module 'info' from module 'populse_db'; the following exception was raised: No module named 'populse_db.info' looking for now-outdated files... none found pickling environment... [ 61%] Built target ylAdvectEuclidean [ 61%] Built target ylLaplacian [ 61%] Built target ylAdvectPath done checking consistency... /casa/host/src/populse/populse_db/master/docs/source/tutorial.rst: WARNING: document isn't included in any toctree done preparing documents... [ 61%] Built target ylAdvectValues done copying assets... copying static files... [ 61%] Built target ylAdvectTubes [ 61%] Built target ylPropagateAlongField [ 61%] Built target ylLabelEachVoxel [ 61%] Built target ylMakeTraversePseudoAreaMap [ 61%] Built target ylMergeCortexColumnRegions done copying extra files... done done writing output... [ 33%] index loading pickled environment... [ 61%] Built target ylUpwindDistance done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv... [ 61%] Built target brainrat loading intersphinx inventory from https://docs.python.org/2.7/objects.inv... [ 61%] Create "share/doc/3.3" [ 61%] Built target primatologist [ 66%] Built target vip [ 66%] Built target cortical_surface [ 66%] Built target soma-workflow-devdoc [ 66%] Built target biodpy [ 66%] Built target AimsBorderInfo [ 66%] Built target AimsAxialProjection [ 66%] Built target AimsBorderGenerate [ 66%] Built target AimsAdaptiveSelVoxel [ 66%] Built target AimsCenterSlices [ 66%] Built target constellation [ 66%] Built target AimsFeaturesExtraction [ 66%] Built target AimsFovAdapt [ 66%] Built target AimsIndividStackSlices writing output... [ 67%] modules [ 66%] Built target AimsMidPlaneAlign [ 66%] Built target AimsInterSliceNormalize [ 66%] Built target AimsGL2Activity [ 66%] Built target bioDetectSlices [ 66%] Built target AimsManualRegistration [ 66%] Built target bioModelClassify writing output... [100%] populse_db [ 71%] Built target sigraph [ 71%] Built target bioModelGenerate [ 71%] Built target bioprocessing [ 71%] Built target AimsSegmentationEM [ 71%] Built target constelBundlesFiltering [ 71%] Built target AimsRegisterQNEstimate [ 71%] Built target AimsSelectGradPoints [ 71%] Built target bioKMeans [ 71%] Built target AimsSparseMatrixSmoothing [ 71%] Built target constelConnectionDensityTexture loading pickled environment... [ 71%] Built target constelConnectivityMatrix [ 71%] Built target constelFibersLengths [ 71%] Built target constelMeanConnectivityProfileFromMatrix WARNING: html_static_path entry '_static' does not exist loading pickled environment... loading pickled environment... [ 71%] Built target constelSelectBundlesFromNames [ 71%] Built target constelSelectFibersFromMesh [ 71%] Built target AimsConstraintCleaner generating indices... genindex [ 71%] Built target AimsCorticalReferential [ 71%] Built target AimsMeshIsoLine [ 71%] Built target AimsCorticalThickness done [ 71%] Built target AimsGyriStuff done loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... py-modindex loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... done writing additional pages... search loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv... loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... building [mo]: targets for 0 po files that are out of date [ 71%] Built target AimsFunctionProjection writing output... [ 71%] Built target AimsCoordinateGridMesh building [html]: targets for 0 source files that are out of date updating environment: 0 added, 1 changed, 0 removed [ 71%] Built target AimsCoordinatesTextureToMesh reading sources... [100%] api loading pickled environment... done dumping search index in English (code: en)... [ 71%] Built target AimsMeshMedianSurface done dumping object inventory... done build succeeded, 3 warnings. The HTML pages are in ../../share/doc/populse-db-3.0. loading pickled environment... [ 76%] Built target AimsCoordinatesToTexture [ 76%] Built target AimsSulcusCorticalSnake [ 76%] Built target AimsParameterizeSulcus done [ 76%] Built target AimsParameterizeGyri [ 76%] Built target AimsFlattenCortex [ 76%] Built target AimsPlotOnSPhericalAtlas [ 85%] Built target anatomist loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv... [ 85%] Built target AimsTextureToAtlas loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... [ 85%] Built target surfTexActivationSimulation [ 85%] Built target surfStructuralAnalysis [ 85%] Built target AimsMeshToAtlas [ 85%] Built target AimsCheck2DCoordinates done [ 85%] Built target AimsConformalMapping [ 85%] Built target AimsExtractGyrus [ 85%] Built target AimsSulcusNormalizeDepthProfile [ 85%] Built target AimsPlotCoordinatesOnMesh [ 85%] Built target AimsMeshToMeshPoint loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv... loading intersphinx inventory from https://docs.python.org/2.7/objects.inv... [ 85%] Built target AimsMeshCoordinatesToDecimated [ 85%] Built target PlotFociForValidation [ 85%] Built target AimsGyriRegularization [ 85%] Built target AimsCoordinatesToIndex [ 85%] Built target AimsSulcalLines [ 85%] Built target AimsGeodesicPath [ 85%] Built target AimsGroupGyri [ 85%] Built target AimsExactDepthArea [ 85%] Built target AimsTextureCompare [ 85%] Built target AimsInterpolateVolumeToSurface [autosummary] generating autosummary for: index.rst [ 85%] Built target anatomist-bin [ 85%] Built target soma-workflow-doc building [mo]: targets for 0 po files that are out of date writing output... done building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 2 warnings. [ 85%] Built target VipBiasCorrection The HTML pages are in ../../share/doc/soma-io-5.2. loading intersphinx inventory from /volatile/a-sac-ns-brainvisa/bbi-nightly/cea-qt6-5.4/build/share/doc/soma-base-5.2/sphinx/objects.inv... loading intersphinx inventory from /volatile/a-sac-ns-brainvisa/bbi-nightly/cea-qt6-5.4/build/share/doc/pyaims-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/volatile/a-sac-ns-brainvisa/bbi-nightly/cea-qt6-5.4/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/volatile/a-sac-ns-brainvisa/bbi-nightly/cea-qt6-5.4/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /volatile/a-sac-ns-brainvisa/bbi-nightly/cea-qt6-5.4/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/volatile/a-sac-ns-brainvisa/bbi-nightly/cea-qt6-5.4/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/volatile/a-sac-ns-brainvisa/bbi-nightly/cea-qt6-5.4/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... [ 85%] Built target VipCovarianceMatrix [ 85%] Built target VipDistanceMap [ 85%] Built target VipClosing [ 85%] Built target VipDeriche [ 85%] Built target VipDilation [ 85%] Built target VipErosion [ 85%] Built target VipExtEdge [ 85%] Built target VipFileDump [ 85%] Built target VipFoldArg [ 85%] Built target VipFoetusHomotopicSnake [ 85%] Built target VipFoldArgAtt [ 85%] Built target VipGetBrain [ 85%] Built target VipGeometry WARNING: impossible to use version 2 of sip/Qt API. loading pickled environment... [ 85%] Built target VipGetHead [ 85%] Built target VipHistoAnalysis [ 85%] Built target VipGreyWhiteClassif [ 85%] Built target VipGreyStatFromClassif [ 85%] Built target VipHyste [ 85%] Built target VipHomotopic [ 85%] Built target VipLabelArg [ 85%] Built target VipHomotopicSnake [ 85%] Built target populse-db-sphinx [ 85%] Built target VipLabelContour WARNING: impossible to use version 2 of sip/Qt API. loading pickled environment... [ 85%] Built target VipLabelMatching [ 85%] Built target VipLabelOverlap loading pickled environment... done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied [ 85%] Built target VipMerge [ 85%] Built target VipListLabel [ 85%] Built target VipMinimizeInformation loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... [ 85%] Built target VipMatching [ 85%] Built target VipMoment loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' [ 85%] Built target VipSetPointValue [ 85%] Built target VipSkeleton [ 85%] Built target VipOpening loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... [ 85%] Built target VipOpenFold [ 85%] Built target VipPca done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... [ 85%] Built target VipSplitBrain loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... [ 85%] Built target VipSwapEndian loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... The XKEYBOARD keymap compiler (xkbcomp) reports: > Warning: Could not resolve keysym XF86CameraAccessEnable > Warning: Could not resolve keysym XF86CameraAccessDisable > Warning: Could not resolve keysym XF86CameraAccessToggle > Warning: Could not resolve keysym XF86NextElement > Warning: Could not resolve keysym XF86PreviousElement > Warning: Could not resolve keysym XF86AutopilotEngageToggle > Warning: Could not resolve keysym XF86MarkWaypoint > Warning: Could not resolve keysym XF86Sos > Warning: Could not resolve keysym XF86NavChart > Warning: Could not resolve keysym XF86FishingChart > Warning: Could not resolve keysym XF86SingleRangeRadar > Warning: Could not resolve keysym XF86DualRangeRadar > Warning: Could not resolve keysym XF86RadarOverlay > Warning: Could not resolve keysym XF86TraditionalSonar > Warning: Could not resolve keysym XF86ClearvuSonar > Warning: Could not resolve keysym XF86SidevuSonar > Warning: Could not resolve keysym XF86NavInfo Errors from xkbcomp are not fatal to the X server [ 85%] Built target VipT1BiasCorrection [ 85%] Built target vip_test_well_composed_configurations [ 85%] Built target VipTalairachCoordinates [ 90%] Built target readFolds [ 90%] Built target vip_test_well_composed_topology [ 90%] Built target VipTopoClassifMeaning [ 90%] Built target VipTopoClassification [ 90%] Built target VipTalairachTransform [ 90%] Built target siChangeModels [ 90%] Built target siCopyNames done [autosummary] generating autosummary for: bv_command.rst, bv_command_help.rst, casa_distro_admin_command.rst, casa_distro_admin_command_help.rst, casa_distro_command.rst, casa_distro_command_help.rst, concepts.rst, developer.rst, index.rst, nightly.rst, technical.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 3 source files that are out of date updating environment: [ 90%] Built target siEnergy 0 added, 6 changed, 0 removed reading sources... [ 17%] bv_command WARNING: impossible to use version 2 of sip/Qt API. loading pickled environment... [ 90%] Built target siDomTrain [ 90%] Built target siGraph2Label [ 90%] Built target siDivNameList [ 90%] Built target sigraph-config [ 90%] Built target siErrorStats [ 90%] Built target siFunctionalGraphs [ 90%] Built target siFlip [ 90%] Built target siError [ 90%] Built target siLearn [ 90%] Built target soma-io-sphinx [ 90%] Built target siLyxErrors [ 90%] Built target siMakeColoredHierarchy done [ 90%] Built target siMakeParcellationHierarchy [ 90%] Built target siMergeModels loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... reading sources... [ 33%] bv_command_help [ 90%] Built target siMakeModel [ 90%] Built target siMeshSulciOperture loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... reading sources... [ 50%] casa_distro_admin_command loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' [ 90%] Built target siMultilabelCompare [ 90%] Built target siParcellation [ 90%] Built target siPIDcommand [ 90%] Built target siRelax [ 90%] Built target siMorpho [ 90%] Built target siMkModelEdges [ 90%] Built target siRevert building [mo]: targets for 0 po files that are out of date writing output... [ 90%] Built target siPutTextureInModel [ 90%] Built target siMeshSulciProjection building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... building [mo]: targets for 0 po files that are out of date writing output... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../share/doc/anatomist-5.2/dev_doc. building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../../share/doc/aimsdata-5.2/dev_doc. [ 90%] Built target siTestModels [ 90%] Built target siTriangModel [ 90%] Built target siSulcalParcellation [ 90%] Built target siTryGauss [ 90%] Built target AimsAmyloidLoadInvSurfVor [ 90%] Built target AimsReadDpy [ 90%] Built target AimsAmyloidDetection [ 90%] Built target AimsAmyloidMRIDetection [ 90%] Built target AimsAmyloidFiltering [ 90%] Built target bioReadDpy [ 90%] Built target AimsAmyloidDensity [ 90%] Built target AimsAffineRegister [ 90%] Built target AimsAmyloidLoadAvgDistNeigh [ 90%] Built target AimsAreaNbConnectCompRatio reading sources... [ 67%] casa_distro_admin_command_help [ 90%] Built target AimsBorderCrop [ 90%] Built target AimsBinaryBoundingBox [ 90%] Built target AimsBoundingBoxCalculation [ 90%] Built target AimsComponentFeaturesVisualize [ 90%] Built target AimsBorderLineProj [ 90%] Built target AimsComponentFeaturesProcess [ 90%] Built target AimsBinaryBorder [ 90%] Built target AimsComponentFeaturesMapGenerate [ 90%] Built target AimsBoundingBoxExtraction [ 90%] Built target AimsCorrectImages [ 90%] Built target AimsCreateFieldsFromMotion [ 90%] Built target AimsChannelProcess [ 90%] Built target AimsFovCentering [autosummary] generating autosummary for: index.rst [ 90%] Built target AimsEntropicThresholding building [mo]: targets for 0 po files that are out of date [ 90%] Built target AimsGridCalibrate writing output... [ 90%] Built target AimsEqualizer [ 90%] Built target AimsGenerateVolume building [html]: targets for 0 source files that are out of date updating environment: building [mo]: targets for 0 po files that are out of date 0 added, 0 changed, 0 removed reading sources... [ 90%] Built target AimsGridGenerate writing output... looking for now-outdated files... none found no targets are out of date. build succeeded, 2 warnings. The HTML pages are in ../../share/doc/brainrat-gpl-5.2/user_doc. [ 90%] Built target AimsHeightFiltering building [html]: targets for 0 source files that are out of date updating environment: [ 90%] Built target AimsIndexCluster [ 90%] Built target AimsInterlaceVolumes 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../share/doc/anatomist-5.2/user_doc. [ 90%] Built target AimsMaskContour [ 90%] Built target AimsInterpolate [ 90%] Built target AimsIndividSlices [ 90%] Built target AimsLabelReorder [ 90%] Built target AimsMeshMatching [ 90%] Built target AimsMergeFFDLabels reading sources... [ 83%] casa_distro_command libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied [ 90%] Built target AimsMidPlaneMask [ 90%] Built target AimsMosaic [ 90%] Built target AimsMIBucketRegister [autosummary] generating autosummary for: aims_config.rst, aims_io.rst, changelog.rst, coordinates_systems.rst, formats.rst, index.rst, spm_format.rst, tutorial.rst [ 90%] Built target AimsMultiRecal [ 90%] Built target AimsOverlapInfo [ 90%] Built target AimsRebuildComp building [mo]: targets for 0 po files that are out of date writing output... [ 90%] Built target AimsResampleFromFieldsData building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 2 warnings. The HTML pages are in ../../../share/doc/aimsdata-5.2/user_doc. [ 90%] Built target AimsRgbToHsv [ 90%] Built target AimsSegment2Modes [ 90%] Built target AimsRoiOverlap The XKEYBOARD keymap compiler (xkbcomp) reports: > Warning: Could not resolve keysym XF86CameraAccessEnable > Warning: Could not resolve keysym XF86CameraAccessDisable > Warning: Could not resolve keysym XF86CameraAccessToggle > Warning: Could not resolve keysym XF86NextElement > Warning: Could not resolve keysym XF86PreviousElement > Warning: Could not resolve keysym XF86AutopilotEngageToggle > Warning: Could not resolve keysym XF86MarkWaypoint > Warning: Could not resolve keysym XF86Sos > Warning: Could not resolve keysym XF86NavChart > Warning: Could not resolve keysym XF86FishingChart > Warning: Could not resolve keysym XF86SingleRangeRadar > Warning: Could not resolve keysym XF86DualRangeRadar > Warning: Could not resolve keysym XF86RadarOverlay > Warning: Could not resolve keysym XF86TraditionalSonar > Warning: Could not resolve keysym XF86ClearvuSonar > Warning: Could not resolve keysym XF86SidevuSonar > Warning: Could not resolve keysym XF86NavInfo Errors from xkbcomp are not fatal to the X server [ 90%] Built target anatomist-free-sphinx [ 90%] Built target AimsSamplingInfo [ 90%] Built target AimsSeparateComp [ 90%] Built target AimsStereotaxy [ 90%] Built target AimsStereologySampling libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied [ 90%] Built target AimsWatershed [ 90%] Built target AimsSubSamplingConservative [ 90%] Built target AimsSeededWatershed [ 90%] Built target bioCellEvaluate [ 90%] Built target bioClusterStatistics [ 90%] Built target bioCellBoundingBoxesGenerate [ 90%] Built target aimsdata-sphinx [ 90%] Built target bioExtractAmyloidLoad [ 90%] Built target bioCorrectMissingLabels QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa' [ 90%] Built target bioComponentConnexe [autosummary] generating autosummary for: core_api.rst, index.rst The XKEYBOARD keymap compiler (xkbcomp) reports: > Warning: Could not resolve keysym XF86CameraAccessEnable > Warning: Could not resolve keysym XF86CameraAccessDisable > Warning: Could not resolve keysym XF86CameraAccessToggle > Warning: Could not resolve keysym XF86NextElement > Warning: Could not resolve keysym XF86PreviousElement > Warning: Could not resolve keysym XF86AutopilotEngageToggle > Warning: Could not resolve keysym XF86MarkWaypoint > Warning: Could not resolve keysym XF86Sos > Warning: Could not resolve keysym XF86NavChart > Warning: Could not resolve keysym XF86FishingChart > Warning: Could not resolve keysym XF86SingleRangeRadar > Warning: Could not resolve keysym XF86DualRangeRadar > Warning: Could not resolve keysym XF86RadarOverlay > Warning: Could not resolve keysym XF86TraditionalSonar > Warning: Could not resolve keysym XF86ClearvuSonar > Warning: Could not resolve keysym XF86SidevuSonar > Warning: Could not resolve keysym XF86NavInfo Errors from xkbcomp are not fatal to the X server [ 90%] Built target bioExtractDice [ 90%] Built target bioFindCellSeeds [autosummary] generating autosummary for: index.rst [ 90%] Built target bioMacGetSingleBrain building [mo]: targets for 0 po files that are out of date writing output... [ 90%] Built target bioPrepareData4DlIndiv building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../share/doc/morphologist-ui-5.2. [ 90%] Built target bioRenumberConnectComp [ 90%] Built target bioStatDominanceAppli [ 90%] Built target AimsAdaptiveGaussianSmoothing [ 90%] Built target bioVoxelFeatures [ 90%] Built target AimsEdgeExtract [ 90%] Built target AimsExtremaMap [ 90%] Create "share/doc/3.0" [ 90%] Built target AimsSigmaImageCalculate [ 90%] Built target bioVoxelWiseStatistics [ 90%] Create "share/doc/5.2" [ 90%] Create "share/doc/5.2" [ 90%] Built target AimsRegionGrowingExtrema Qt WebEngine seems to be initialized from a plugin. Please set Qt::AA_ShareOpenGLContexts using QCoreApplication::setAttribute and QSGRendererInterface::OpenGLRhi using QQuickWindow::setGraphicsApi before constructing QGuiApplication. WARNING: impossible to use version 2 of sip/Qt API. loading pickled environment... reading sources... [100%] casa_distro_command_help [ 90%] Built target populse-db-devdoc [ 90%] Built target anatomist-free-devdoc [ 90%] Built target soma-io-devdoc [ 90%] Built target brainrat-gpl-usrsphinx Attribute Qt::AA_ShareOpenGLContexts must be set before QCoreApplication is created. [100%] Built target bv_commands_doc loading pickled environment... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:09:55,894::INFO::Found '14' pipeline(s) in 'morphologist.capsul'. [100%] Built target populse-db-doc [autosummary] generating autosummary for: axon_manual.rst, axon_manual2.rst, changelog.rst, connectomist_tutorial.rst, index.rst, morphologist_tutorial.rst, tutorial.rst [100%] Built target anatomist-free-usrsphinx building [mo]: targets for 0 po files that are out of date writing output... [100%] Built target soma-io-doc building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 2 warnings. The HTML pages are in ../../share/doc/axon-5.2/user_doc. [100%] Create "share/doc/5.2" QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa' [100%] Create "share/doc/5.2" [100%] Built target brainrat-gpl-usrdoc [100%] Built target aims-free-usrsphinx [100%] Built target anatomist-free-usrdoc ../../../src/development/casa-distro/master/doc/source/bv_command_help.rst:13: WARNING: Option list ends without a blank line; unexpected unindent. /casa/host/src/development/casa-distro/master/doc/source/bv_command_help.rst:13: WARNING: Option list ends without a blank line; unexpected unindent. /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:40: WARNING: duplicate label casa-distro-admin-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:57: WARNING: duplicate label casa-distro-admin-singularity-deb-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:83: WARNING: duplicate label casa-distro-admin-create-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:204: WARNING: duplicate label casa-distro-admin-publish-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:245: WARNING: duplicate label casa-distro-admin-create-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:368: WARNING: duplicate label casa-distro-admin-publish-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:394: WARNING: duplicate label casa-distro-admin-bbi-daily-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:530: WARNING: duplicate label casa-distro-admin-local-install-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:576: WARNING: duplicate label casa-distro-admin-convert-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:63: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:117: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:219: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:263: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:383: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:456: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:537: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:580: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:40: WARNING: duplicate label casa-distro-admin-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:57: WARNING: duplicate label casa-distro-admin-singularity-deb-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:83: WARNING: duplicate label casa-distro-admin-create-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:204: WARNING: duplicate label casa-distro-admin-publish-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:245: WARNING: duplicate label casa-distro-admin-create-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:368: WARNING: duplicate label casa-distro-admin-publish-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:394: WARNING: duplicate label casa-distro-admin-bbi-daily-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:530: WARNING: duplicate label casa-distro-admin-local-install-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:576: WARNING: duplicate label casa-distro-admin-convert-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:63: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:117: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:219: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:263: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:383: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:456: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:537: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:580: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst ../../../src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:292: ERROR: Unexpected indentation. /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:40: WARNING: duplicate label casa-distro-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:57: WARNING: duplicate label casa-distro-distro-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:65: WARNING: duplicate label casa-distro-list-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:115: WARNING: duplicate label casa-distro-run-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:209: WARNING: duplicate label casa-distro-pull-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:311: WARNING: duplicate label casa-distro-shell-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:402: WARNING: duplicate label casa-distro-mrun-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:499: WARNING: duplicate label casa-distro-bv-maker-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:69: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:123: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:248: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:316: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:413: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:504: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:292: ERROR: Unexpected indentation. /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:40: WARNING: duplicate label casa-distro-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:57: WARNING: duplicate label casa-distro-distro-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:65: WARNING: duplicate label casa-distro-list-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:115: WARNING: duplicate label casa-distro-run-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:209: WARNING: duplicate label casa-distro-pull-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:311: WARNING: duplicate label casa-distro-shell-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:402: WARNING: duplicate label casa-distro-mrun-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:499: WARNING: duplicate label casa-distro-bv-maker-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:69: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:123: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:248: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:316: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:413: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:504: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst looking for now-outdated files... none found pickling environment... [100%] Built target brainrat-gpl-doc [100%] Create "share/doc/5.2" [100%] Built target anatomist-free-doc done checking consistency... done preparing documents... done copying assets... copying static files... [100%] Built target aims-free-usrdoc done copying extra files... done done writing output... [ 14%] bv_command [100%] Built target morphologist-ui-usrsphinx [100%] Create "share/doc/5.2" /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:09:56,588::INFO::Found '14' pipeline(s) in 'morphologist.capsul'. writing output... [ 29%] bv_command_help writing output... [ 43%] casa_distro_admin_command [100%] Built target morphologist-ui-usrdoc [100%] Built target axon-usrsphinx [100%] Create "share/doc/5.2" writing output... [ 57%] casa_distro_admin_command_help [100%] Built target axon-usrdoc done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/capsul-2.6/objects.inv... loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... writing output... [ 71%] casa_distro_command writing output... [ 86%] casa_distro_command_help writing output... [100%] index generating indices... done highlighting module code... writing additional pages... search Starting Anatomist..... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 66 warnings. The HTML pages are in ../../share/doc/casa-distro-3.2. Generating BrainVISA processes documentation [100%] Built target bv_ontology_doc [100%] Built target casa-distro-sphinx [100%] Create "share/doc/3.2" [100%] Built target casa-distro-devdoc [autosummary] generating autosummary for: capsul.rst, developer_manual.rst, index.rst, python.rst, python_bv_configuration.rst, python_bv_data.rst, python_bv_data_gui.rst, python_bv_processing.rst, python_bv_processing_gui.rst, python_bv_tools.rst, usecases.rst, usecases_nb.ipynb [100%] Built target casa-distro-doc generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_info.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_sources.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_status.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_configure.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_build.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_doc.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_testref.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_test.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_pack.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_install_pack.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_testref_pack.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_test_pack.rst generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_publish_pack.rst loading pickled environment... WARNING: Failed to import morphologist.intra_analysis. Possible hints: * ImportError: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py) * AttributeError: module 'morphologist' has no attribute 'intra_analysis' qt backend: PyQt6 building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] core_api done [autosummary] generating autosummary for: bv_env.rst, bv_maker.rst, bv_maker_help.rst, bv_maker_help_build.rst, bv_maker_help_configure.rst, bv_maker_help_doc.rst, bv_maker_help_info.rst, bv_maker_help_install_pack.rst, bv_maker_help_pack.rst, bv_maker_help_publish_pack.rst, ..., bv_maker_help_testref.rst, bv_maker_help_testref_pack.rst, cmake_functions.rst, compile_existing.rst, configuration.rst, dependencies.rst, documenting.rst, index.rst, new_project.rst, testing_monitoring.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 14 source files that are out of date updating environment: 0 added, 15 changed, 0 removed reading sources... [ 7%] bv_maker qt backend: PyQt6 WARNING: autodoc: failed to import module 'intra_analysis' from module 'morphologist'; the following exception was raised: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py) looking for now-outdated files... none found pickling environment... libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied The XKEYBOARD keymap compiler (xkbcomp) reports: > Warning: Could not resolve keysym XF86CameraAccessEnable > Warning: Could not resolve keysym XF86CameraAccessDisable > Warning: Could not resolve keysym XF86CameraAccessToggle > Warning: Could not resolve keysym XF86NextElement > Warning: Could not resolve keysym XF86PreviousElement > Warning: Could not resolve keysym XF86AutopilotEngageToggle > Warning: Could not resolve keysym XF86MarkWaypoint > Warning: Could not resolve keysym XF86Sos > Warning: Could not resolve keysym XF86NavChart > Warning: Could not resolve keysym XF86FishingChart > Warning: Could not resolve keysym XF86SingleRangeRadar > Warning: Could not resolve keysym XF86DualRangeRadar > Warning: Could not resolve keysym XF86RadarOverlay > Warning: Could not resolve keysym XF86TraditionalSonar > Warning: Could not resolve keysym XF86ClearvuSonar > Warning: Could not resolve keysym XF86SidevuSonar > Warning: Could not resolve keysym XF86NavInfo Errors from xkbcomp are not fatal to the X server done checking consistency... done preparing documents... done copying assets... copying static files... reading sources... [ 13%] bv_maker_help done copying extra files... done done writing output... [ 50%] core_api reading sources... [ 20%] bv_maker_help_build reading sources... [ 27%] bv_maker_help_configure reading sources... [ 33%] bv_maker_help_doc reading sources... [ 40%] bv_maker_help_info reading sources... [ 47%] bv_maker_help_install_pack reading sources... [ 53%] bv_maker_help_pack reading sources... [ 60%] bv_maker_help_publish_pack reading sources... [ 67%] bv_maker_help_sources reading sources... [ 73%] bv_maker_help_status reading sources... [ 80%] bv_maker_help_test reading sources... [ 87%] bv_maker_help_test_pack reading sources... [ 93%] libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied bv_maker_help_testref reading sources... [100%] bv_maker_help_testref_pack looking for now-outdated files... none found pickling environment... The XKEYBOARD keymap compiler (xkbcomp) reports: > Warning: Could not resolve keysym XF86CameraAccessEnable > Warning: Could not resolve keysym XF86CameraAccessDisable > Warning: Could not resolve keysym XF86CameraAccessToggle > Warning: Could not resolve keysym XF86NextElement > Warning: Could not resolve keysym XF86PreviousElement > Warning: Could not resolve keysym XF86AutopilotEngageToggle > Warning: Could not resolve keysym XF86MarkWaypoint > Warning: Could not resolve keysym XF86Sos > Warning: Could not resolve keysym XF86NavChart > Warning: Could not resolve keysym XF86FishingChart > Warning: Could not resolve keysym XF86SingleRangeRadar > Warning: Could not resolve keysym XF86DualRangeRadar > Warning: Could not resolve keysym XF86RadarOverlay > Warning: Could not resolve keysym XF86TraditionalSonar > Warning: Could not resolve keysym XF86ClearvuSonar > Warning: Could not resolve keysym XF86SidevuSonar > Warning: Could not resolve keysym XF86NavInfo writing output... [100%] index Errors from xkbcomp are not fatal to the X server generating indices... genindex done checking consistency... done preparing documents... done copying assets... copying static files... libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied py-modindex The XKEYBOARD keymap compiler (xkbcomp) reports: > Warning: Could not resolve keysym XF86CameraAccessEnable > Warning: Could not resolve keysym XF86CameraAccessDisable > Warning: Could not resolve keysym XF86CameraAccessToggle > Warning: Could not resolve keysym XF86NextElement > Warning: Could not resolve keysym XF86PreviousElement > Warning: Could not resolve keysym XF86AutopilotEngageToggle > Warning: Could not resolve keysym XF86MarkWaypoint > Warning: Could not resolve keysym XF86Sos > Warning: Could not resolve keysym XF86NavChart > Warning: Could not resolve keysym XF86FishingChart > Warning: Could not resolve keysym XF86SingleRangeRadar > Warning: Could not resolve keysym XF86DualRangeRadar > Warning: Could not resolve keysym XF86RadarOverlay > Warning: Could not resolve keysym XF86TraditionalSonar > Warning: Could not resolve keysym XF86ClearvuSonar > Warning: Could not resolve keysym XF86SidevuSonar > Warning: Could not resolve keysym XF86NavInfo done copying extra files... done done writing output... [ 6%] bv_maker Errors from xkbcomp are not fatal to the X server done highlighting module code... writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 3 warnings. The HTML pages are in ../../share/doc/morphologist-ui-5.2/dev_doc. writing output... [ 12%] bv_maker_help writing output... [ 19%] bv_maker_help_build writing output... [ 25%] bv_maker_help_configure writing output... [ 31%] bv_maker_help_doc writing output... [ 38%] bv_maker_help_info writing output... [ 44%] bv_maker_help_install_pack writing output... [ 50%] bv_maker_help_pack writing output... [ 56%] bv_maker_help_publish_pack writing output... [ 62%] bv_maker_help_sources writing output... [ 69%] bv_maker_help_status writing output... [ 75%] bv_maker_help_test writing output... [ 81%] bv_maker_help_test_pack writing output... [ 88%] bv_maker_help_testref writing output... [ 94%] bv_maker_help_testref_pack writing output... [100%] index generating indices... genindex done highlighting module code... writing additional pages... search [100%] Built target morphologist-ui-sphinx done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in ../../share/doc/brainvisa-cmake-6.0. [100%] Create "share/doc/5.2" [100%] Built target morphologist-ui-devdoc [100%] Built target morphologist-ui-doc [100%] Built target brainvisa-cmake-usrsphinx [100%] Create "share/doc/6.0" config file : /casa/home/.anatomist/config/settings.cfg [100%] Built target brainvisa-cmake-usrdoc [100%] Built target brainvisa-cmake-doc [NbConvertApp] Converting notebook /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb.in to notebook QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa' /casa/host/build/python/soma/config.py:docstring of soma.config.BRAINVISA_SHARE:1: WARNING: duplicate object description of soma.config.BRAINVISA_SHARE, other instance in api, use :no-index: for one of them /casa/host/build/python/soma/controller/controller.py:docstring of soma.controller.controller.Controller.add_trait:1: WARNING: duplicate object description of soma.controller.controller.Controller.add_trait, other instance in api, use :no-index: for one of them /casa/host/build/python/soma/controller/controller.py:docstring of soma.controller.controller.Controller.is_user_trait:1: WARNING: duplicate object description of soma.controller.controller.Controller.is_user_trait, other instance in api, use :no-index: for one of them /casa/host/build/python/soma/controller/controller.py:docstring of soma.controller.controller.Controller.remove_trait:1: WARNING: duplicate object description of soma.controller.controller.Controller.remove_trait, other instance in api, use :no-index: for one of them /casa/host/build/python/soma/controller/controller.py:docstring of soma.controller.controller.Controller.user_traits:1: WARNING: duplicate object description of soma.controller.controller.Controller.user_traits, other instance in api, use :no-index: for one of them WARNING: autodoc: failed to import module 'crypt' from module 'soma'; the following exception was raised: No module named 'Crypto' /casa/host/build/python/soma/fom.py:docstring of soma.fom.AttributesToPaths.allowed_extensions_for_parameter:5: ERROR: Unexpected indentation. /casa/host/build/python/soma/fom.py:docstring of soma.fom.AttributesToPaths.allowed_extensions_for_parameter:6: WARNING: Block quote ends without a blank line; unexpected unindent. /casa/host/build/python/soma/mpfork.py:docstring of soma.mpfork.worker:4: ERROR: Unexpected indentation. /casa/host/build/python/soma/mpfork.py:docstring of soma.mpfork.worker:5: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 50%] api [NbConvertApp] Writing 59249 bytes to /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:01,469::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:01,703::INFO::Pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.brainorientation.BrainOrientation.png'. -- nbsphinx should work. -- Using Qt backend: PyQt6 source: /casa/host/src/capsul/master/doc/source dest: /casa/host/build/share/doc/capsul-2.6 cwd: /casa/host/src/capsul/master/doc/source exec: /usr/bin/python3 -m jupyter nbconvert --to notebook --output /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb.in loading pickled environment... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:01,834::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:01,890::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:01,941::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'. done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... [autosummary] generating autosummary for: api/api.rst, api/attributes.rst, api/engine.rst, api/in_context.rst, api/index.rst, api/info.rst, api/pipeline.rst, api/plugins.rst, api/process.rst, api/qt_apps.rst, ..., api/subprocess.rst, api/utils.rst, documentation.rst, index.rst, installation.rst, status.rst, tutorial/capsul_tutorial.ipynb, user_guide_tree/advanced_usage.rst, user_guide_tree/index.rst, user_guide_tree/xml_spec.rst writing output... [100%] index generating indices... genindex done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/dev_doc/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... py-modindex WARNING: Failed to import capsul.qt_apps.main_window. Possible hints: * ImportError: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py) * AttributeError: module 'capsul.qt_apps' has no attribute 'main_window' done highlighting module code... [ 3%] soma.application highlighting module code... [ 5%] soma.archive highlighting module code... [ 8%] soma.bufferandfile highlighting module code... [ 11%] soma.config highlighting module code... [ 14%] soma.controller.controller highlighting module code... [ 16%] soma.debug highlighting module code... [ 19%] soma.factory highlighting module code... [ 22%] soma.fom highlighting module code... [ 24%] soma.global_naming highlighting module code... [ 27%] soma.html highlighting module code... [ 30%] soma.importer highlighting module code... [ 32%] soma.logging highlighting module code... [ 35%] soma.minf.api highlighting module code... [ 38%] soma.mpfork highlighting module code... [ 41%] soma.notification highlighting module code... [ 43%] soma.path highlighting module code... [ 46%] soma.qimage2ndarray highlighting module code... [ 49%] soma.qt_gui.controller_widget highlighting module code... [ 51%] soma.qt_gui.io highlighting module code... [ 54%] soma.qt_gui.qtThread highlighting module code... [ 57%] soma.qt_gui.qt_backend highlighting module code... [ 59%] soma.qt_gui.rangeSlider highlighting module code... [ 62%] soma.qt_gui.timered_widgets highlighting module code... [ 65%] soma.safemkdir highlighting module code... [ 68%] soma.serialization highlighting module code... [ 70%] soma.singleton highlighting module code... [ 73%] soma.somatime highlighting module code... [ 76%] soma.sorted_dictionary highlighting module code... [ 78%] soma.sqlite_tools highlighting module code... [ 81%] soma.stringtools highlighting module code... [ 84%] soma.thread_calls highlighting module code... [ 86%] soma.translation highlighting module code... [ 89%] soma.utils.find_library highlighting module code... [ 92%] soma.utils.functiontools highlighting module code... [ 95%] soma.utils.loader highlighting module code... [ 97%] soma.utils.weak_proxy highlighting module code... [100%] soma.uuid writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 11 warnings. The HTML pages are in ../../share/doc/soma-base-5.3/sphinx. This plugin does not support propagateSizeHints() [100%] Built target soma-base-sphinx [100%] Create "share/doc/5.3" [100%] Built target soma-base-devdoc [100%] Built target soma-base-doc WARNING: Failed to import capsul.qt_apps.pipeline_viewer_app. Possible hints: * ImportError: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py) * AttributeError: module 'capsul.qt_apps' has no attribute 'pipeline_viewer_app' Qt offscreen does not work. Cannot allocate an OpenGL context. Using Xvfb if possible. using DISPLAY=:3 VirtualGL found. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../share/doc/axon-5.2/dev_doc. libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied libEGL warning: failed to open /dev/dri/card1: Permission denied The XKEYBOARD keymap compiler (xkbcomp) reports: > Warning: Could not resolve keysym XF86CameraAccessEnable > Warning: Could not resolve keysym XF86CameraAccessDisable > Warning: Could not resolve keysym XF86CameraAccessToggle > Warning: Could not resolve keysym XF86NextElement > Warning: Could not resolve keysym XF86PreviousElement > Warning: Could not resolve keysym XF86AutopilotEngageToggle > Warning: Could not resolve keysym XF86MarkWaypoint > Warning: Could not resolve keysym XF86Sos > Warning: Could not resolve keysym XF86NavChart > Warning: Could not resolve keysym XF86FishingChart > Warning: Could not resolve keysym XF86SingleRangeRadar > Warning: Could not resolve keysym XF86DualRangeRadar > Warning: Could not resolve keysym XF86RadarOverlay > Warning: Could not resolve keysym XF86TraditionalSonar > Warning: Could not resolve keysym XF86ClearvuSonar > Warning: Could not resolve keysym XF86SidevuSonar > Warning: Could not resolve keysym XF86NavInfo Errors from xkbcomp are not fatal to the X server [autosummary] generating autosummary for: index.rst, pyaims_aimsalgo.rst, pyaims_aimsalgo_examples.rst, pyaims_algo.rst, pyaims_api_aims.rst, pyaims_api_aimsalgo.rst, pyaims_examples.rst, pyaims_examples_advanced.rst, pyaims_highlevel.rst, pyaims_lowlevel.rst, pyaims_modules_api.rst, pyaims_tutorial.rst, pyaims_tutorial_nb.ipynb, volume_orientation.ipynb building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 2 warnings. The HTML pages are in ../../../../share/doc/pyaims-5.2/sphinx. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 1 source files that are out of date updating environment: 0 added, 2 changed, 0 removed reading sources... [ 50%] api/qt_apps reading sources... [100%] tutorial/capsul_tutorial [100%] Built target axon-sphinx [100%] Create "share/doc/5.2" [100%] Built target axon-devdoc /usr/lib/python3/dist-packages/sphinx_gallery/sphinx_compatibility.py:71: RemovedInSphinx80Warning: The alias 'sphinx.util.status_iterator' is deprecated, use 'sphinx.util.display.status_iterator' instead. Check CHANGES for Sphinx API modifications. status_iterator = sphinx.util.status_iterator WARNING: multiple files found for the document "auto_examples/activateaction": ['auto_examples/activateaction.ipynb', 'auto_examples/activateaction.rst', 'auto_examples/activateaction.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/activateaction.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/addMenuEntry": ['auto_examples/addMenuEntry.ipynb', 'auto_examples/addMenuEntry.rst', 'auto_examples/addMenuEntry.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/addMenuEntry.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/aimsvolumetest": ['auto_examples/aimsvolumetest.ipynb', 'auto_examples/aimsvolumetest.rst', 'auto_examples/aimsvolumetest.py.md5', 'auto_examples/aimsvolumetest.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/aimsvolumetest.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/anagraphannotate": ['auto_examples/anagraphannotate.ipynb', 'auto_examples/anagraphannotate.py', 'auto_examples/anagraphannotate.rst', 'auto_examples/anagraphannotate.py.md5'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/anagraphannotate.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/bvProcessSocket": ['auto_examples/bvProcessSocket.rst', 'auto_examples/bvProcessSocket.ipynb', 'auto_examples/bvProcessSocket.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/bvProcessSocket.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/control": ['auto_examples/control.ipynb', 'auto_examples/control.xpm', 'auto_examples/control.py', 'auto_examples/control.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/control.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/customcommands": ['auto_examples/customcommands.py', 'auto_examples/customcommands.ipynb', 'auto_examples/customcommands.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/customcommands.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/customopenglobject": ['auto_examples/customopenglobject.py.md5', 'auto_examples/customopenglobject.ipynb', 'auto_examples/customopenglobject.rst', 'auto_examples/customopenglobject.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/customopenglobject.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/ellipsoid": ['auto_examples/ellipsoid.rst', 'auto_examples/ellipsoid.py', 'auto_examples/ellipsoid.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/ellipsoid.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/events": ['auto_examples/events.rst', 'auto_examples/events.py', 'auto_examples/events.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/events.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/fusion": ['auto_examples/fusion.rst', 'auto_examples/fusion.py', 'auto_examples/fusion.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/fusion.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/fusion3D": ['auto_examples/fusion3D.py', 'auto_examples/fusion3D.ipynb', 'auto_examples/fusion3D.py.md5', 'auto_examples/fusion3D.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/fusion3D.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/graph": ['auto_examples/graph.ipynb', 'auto_examples/graph.py', 'auto_examples/graph.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/graph.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/graph_building": ['auto_examples/graph_building.ipynb', 'auto_examples/graph_building.py.md5', 'auto_examples/graph_building.py', 'auto_examples/graph_building.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/graph_building.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/meshtest": ['auto_examples/meshtest.py', 'auto_examples/meshtest.rst', 'auto_examples/meshtest.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/meshtest.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/nomenclatureselection": ['auto_examples/nomenclatureselection.py', 'auto_examples/nomenclatureselection.ipynb', 'auto_examples/nomenclatureselection.rst', 'auto_examples/nomenclatureselection.py.md5'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/nomenclatureselection.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/selection": ['auto_examples/selection.ipynb', 'auto_examples/selection.rst', 'auto_examples/selection.py.md5', 'auto_examples/selection.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/selection.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/sphere": ['auto_examples/sphere.py', 'auto_examples/sphere.ipynb', 'auto_examples/sphere.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/sphere.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/volumeMeasures": ['auto_examples/volumeMeasures.ipynb', 'auto_examples/volumeMeasures.rst', 'auto_examples/volumeMeasures.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/volumeMeasures.ipynb' for the build. WARNING: multiple files found for the document "auto_examples/volumetest": ['auto_examples/volumetest.py.md5', 'auto_examples/volumetest.py', 'auto_examples/volumetest.rst', 'auto_examples/volumetest.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/volumetest.ipynb' for the build. Qt offscreen does not work. Cannot allocate an OpenGL context. Using Xvfb if possible. using DISPLAY=:2 VirtualGL found. global modules: /casa/host/build/share/anatomist-5.2/python_plugins home modules: /casa/home/.anatomist/python_plugins loading module ana_image_math loading module save_resampled loading module modelGraphs loading module volumepalettes loading module valuesplotwindow loading module gradientpalette loading module histogram loading module gltf_io loading module foldsplit loading module anacontrolmenu loading module meshsplit loading module paletteViewer loading module simple_controls loading module bundles_small_brains loading module bundles_split_by_cortical_regions loading module measure loading module palettecontrols loading module selection loading module bsa_proba loading module statsplotwindow loading module profilewindow loading module infowindow all python modules loaded Anatomist started. loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... loading intersphinx inventory from https://docs.python.org/3.12/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' [autosummary] generating autosummary for: ana_notebook.ipynb, auto_examples/activateaction.ipynb, auto_examples/addMenuEntry.ipynb, auto_examples/aimsvolumetest.ipynb, auto_examples/anagraphannotate.ipynb, auto_examples/bvProcessSocket.ipynb, auto_examples/control.ipynb, auto_examples/customcommands.ipynb, auto_examples/customopenglobject.ipynb, auto_examples/ellipsoid.ipynb, ..., pyanatomist_examples.rst, pyanatomist_headless.rst, pyanatomist_howto.rst, pyanatomist_notebook.rst, pyanatomist_pyaims_tutorial.rst, pyanatomist_socket.rst, pyanatomist_threaded.rst, pyanatomist_tutorial.rst, pyanatomist_tutorial_nb.ipynb, pyanatomist_wip.rst WARNING: Failed to import anatomist.altas_viewer. Possible hints: * AttributeError: module 'anatomist' has no attribute 'altas_viewer' * ModuleNotFoundError: No module named 'anatomist.altas_viewer' WARNING: Failed to import anatomist.socket.api. Possible hints: * ImportError: cannot import name 'qApp' from 'PyQt6.Qt' (/usr/lib/python3/dist-packages/PyQt6/QtGui.abi3.so) * AttributeError: module 'anatomist.socket' has no attribute 'api' generating gallery... Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files. generating gallery for auto_examples... [ 4%] volumetest.py generating gallery for auto_examples... [ 9%] nomenclatureselection.py generating gallery for auto_examples... [ 13%] graph.py WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/graph.py failed to execute correctly: Traceback (most recent call last): File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/graph.py", line 50, in <module> if QtGui.qApp.startingUp(): ^^^^^^^^^^ AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp' generating gallery for auto_examples... [ 17%] customcommands.py generating gallery for auto_examples... [ 22%] events.py generating gallery for auto_examples... [ 26%] addMenuEntry.py generating gallery for auto_examples... [ 30%] fusion3D.py generating gallery for auto_examples... [ 35%] selection.py generating gallery for auto_examples... [ 39%] activateaction.py generating gallery for auto_examples... [ 43%] graph_building.py generating gallery for auto_examples... [ 48%] bvProcessSocket.py Process2 execution, a: 0.000000, b: blop /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:09,838::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'. Process2 execution, a: 0.000000, b: yup generating gallery for auto_examples... [ 52%] aimsvolumetest.py generating gallery for auto_examples... [ 57%] meshtest.py WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/meshtest.py failed to execute correctly: Traceback (most recent call last): File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/meshtest.py", line 46, in <module> from soma.qt_gui.qt_backend.QtGui import qApp ImportError: cannot import name 'qApp' from 'PyQt6.QtGui' (/usr/lib/python3/dist-packages/PyQt6/QtGui.abi3.so) generating gallery for auto_examples... [ 61%] sphere.py generating gallery for auto_examples... [ 65%] fusion.py generating gallery for auto_examples... [ 70%] ellipsoid.py QOpenGLWidget is not supported on this platform. QOpenGLWidget is not supported on this platform. This plugin does not support propagateSizeHints() This plugin does not support raise() WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/ellipsoid.py failed to execute correctly: Traceback (most recent call last): File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/ellipsoid.py", line 135, in <module> QtGui.qApp.processEvents() ^^^^^^^^^^ AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp' generating gallery for auto_examples... [ 74%] control.py WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/control.py failed to execute correctly: Traceback (most recent call last): File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/control.py", line 56, in <module> if QtGui.qApp.startingUp() and 'IPython' not in sys.modules: ^^^^^^^^^^ AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp' generating gallery for auto_examples... [ 78%] anagraphannotate.py generating gallery for auto_examples... [ 83%] customopenglobject.py generating gallery for auto_examples... [ 87%] volumeMeasures.py /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:12,065::INFO::Pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.png'. generating gallery for auto_examples... [ 91%] anaevensimplerviewer.py /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:12,304::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'. This plugin does not support propagateSizeHints() /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:12,610::INFO::Pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.brainorientation.BrainOrientation.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:12,742::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'. QOpenGLWidget is not supported on this platform. QOpenGLWidget is not supported on this platform. QOpenGLWidget is not supported on this platform. QOpenGLWidget is not supported on this platform. This plugin does not support propagateSizeHints() This plugin does not support propagateSizeHints() PyAnatomist Module present PythonLauncher::runModules() Multitexturing present function glActiveTexture found. function glClientActiveTexture found. function glBlendEquation found. function glTexImage3D found. function glMultiTexCoord3f found. function glBindFramebuffer found. function glBindRenderbuffer found. function glFramebufferTexture2D found. function glGenFramebuffers found. function glGenRenderbuffers found. function glFramebufferRenderbuffer found. function glRenderbufferStorage found. function glCheckFramebufferStatus found. function glDeleteRenderbuffers found. function glDeleteFramebuffers found. Number of texture units: 8 function glUniform1f found. function glUniform1i found. function glUniform4fv found. function glGetUniformLocation found. function glMultTransposeMatrixf found. function glAttachShader found. function glDetachShader found. function glCompileShader found. function glCreateProgram found. function glCreateShader found. function glDeleteProgram found. function glDeleteShader found. function glGetProgramiv found. function glGetShaderiv found. function glLinkProgram found. function glShaderSource found. function glUseProgram found. GL_ARB_shadow present GL_SGIX_shadow extension not available GL_SGIX_depth_texture extension not available GL_ARB_depth_texture extension present GL_ARB_texture_cube_map extension present GL_EXT_texture_cube_map extension present Number of texture units: 8 QPainter::begin: Paint device returned engine == 0, type: 1 QPainter::setRenderHint: Painter must be active to set rendering hints QPainter::setRenderHint: Painter must be active to set rendering hints QPainter::worldTransform: Painter not active QPainter::save: Painter not active Segmentation fault (core dumped) [100%] Built target anatomist-gpl-sphinx [100%] Create "share/doc/5.2" [100%] Built target anatomist-gpl-devdoc [100%] Built target aims-free-sphinx [100%] Built target anatomist-gpl-doc [100%] Create "share/doc/5.2" [100%] Built target aims-free-devdoc [100%] Built target aims-free-doc Process2 execution, a: 0.000000, b: blop /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:22,904::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:23,035::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:23,197::INFO::Pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:23,433::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:23,550::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:23,658::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:23,869::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:23,973::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,603::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,603::INFO::Found '3' process(es) in 'deepsulci.sulci_labeling.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,603::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,609::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,612::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.training.SulciDeepTraining'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,614::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,615::INFO::process: '3' files written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,615::INFO::Writing module 'sulci_labeling' index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:24,615::INFO::Index: an index has been written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:24,718::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:24,904::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,029::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,205::INFO::Pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,211::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,336::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,360::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,360::INFO::Summary: '14' files written for module 'capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,443::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,712::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,865::INFO::Pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,969::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:25,969::INFO::Summary: '14' files written for module 'capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:27,044::INFO::Found '14' pipeline(s) in 'morphologist.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:27,044::INFO::Found '40' process(es) in 'morphologist.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:27,044::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:27,761::INFO::Found '14' pipeline(s) in 'morphologist.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:27,761::INFO::Found '40' process(es) in 'morphologist.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:27,761::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:35,445::ERROR::Traceback (most recent call last): File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process __import__(sub_sub_module_name) File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module> from ..method.svm import SVMPatternClassification File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in <module> import pcl ModuleNotFoundError: No module named 'pcl' /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:35,445::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:35,448::ERROR::Traceback (most recent call last): File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process __import__(sub_sub_module_name) File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module> from ..method.svm import SVMPatternClassification File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in <module> import pcl ModuleNotFoundError: No module named 'pcl' /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:35,449::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-27 08:10:35,932::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,096::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,113::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,182::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,205::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,294::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,321::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,420::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,438::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,456::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,546::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,565::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,609::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,615::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,635::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,650::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,663::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,823::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,861::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:37,975::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:38,037::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:38,066::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:38,091::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,161::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,197::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,218::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,219::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,219::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,221::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,222::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,223::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,224::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,226::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,227::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,228::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,229::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,230::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,231::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,232::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,235::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,248::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,250::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,251::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,253::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,260::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,266::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,272::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,278::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,280::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,281::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,282::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,283::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,284::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,286::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,287::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,288::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,289::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,290::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,292::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,293::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,295::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,296::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,297::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,298::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,305::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,306::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,307::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,308::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,309::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,309::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,310::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,699::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,726::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,747::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,748::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,748::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,749::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,751::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,753::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,754::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,756::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,756::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,758::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,758::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,759::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,760::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,761::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,764::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,771::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,772::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,773::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,774::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,776::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,778::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,780::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,781::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,783::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,785::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,786::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,787::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,788::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,790::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,791::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,793::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,796::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,798::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,799::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,800::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,802::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,803::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,804::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,805::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,812::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,814::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,815::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,816::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,817::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,817::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:39,817::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul. WARNING: impossible to use version 2 of sip/Qt API. generating CAPSUL processes docs... ['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist', '--schema'] loading pickled environment... done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' WARNING: impossible to use version 2 of sip/Qt API. generating CAPSUL processes docs... ['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist', '--schema'] loading pickled environment... [autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst building [mo]: targets for 0 po files that are out of date writing output... done building [html]: targets for 57 source files that are out of date updating environment: loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... loading intersphinx inventory from doc/morphologist-ui-5.2/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'doc/morphologist-ui-5.2/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/doc/morphologist-ui-5.2/objects.inv' 0 added, 57 changed, 0 removed reading sources... [ 2%] process_docs/morphologist/capsul/index reading sources... [ 4%] process_docs/morphologist/capsul/pipeline/index reading sources... [ 5%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist [autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, sulpated.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 57 source files that are out of date updating environment: 0 added, 57 changed, 0 removed reading sources... [ 2%] process_docs/morphologist/capsul/index reading sources... [ 7%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline reading sources... [ 4%] process_docs/morphologist/capsul/pipeline/index reading sources... [ 5%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist reading sources... [ 9%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation reading sources... [ 11%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline reading sources... [ 12%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization reading sources... [ 14%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped reading sources... 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Continuing with doubts... nbconvert.utils.pandoc.check_pandoc_version() [100%] Create "share/doc/5.2" [100%] Built target morphologist-gpl-usrdoc [100%] Built target morphologist-gpl-doc [100%] Built target usrdoc /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:48,922::ERROR::Traceback (most recent call last): File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process __import__(sub_sub_module_name) File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module> from ..method.svm import SVMPatternClassification File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in <module> import pcl ModuleNotFoundError: No module named 'pcl' /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:48,922::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:48,924::ERROR::Traceback (most recent call last): File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process __import__(sub_sub_module_name) File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module> from ..method.svm import SVMPatternClassification File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in <module> import pcl ModuleNotFoundError: No module named 'pcl' /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:48,924::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,420::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,420::INFO::Found '4' process(es) in 'deepsulci.pattern_classification.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,421::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,428::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,431::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,433::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,436::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,436::INFO::process: '4' files written for module 'pattern_classification' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,436::INFO::Writing module 'pattern_classification' index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-27 08:10:49,437::INFO::Index: an index has been written for module 'pattern_classification' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification. WARNING: html_static_path entry '_static' does not exist WARNING: impossible to use version 2 of sip/Qt API. generating CAPSUL processes docs... ['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.sulci_labeling.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci', '--schema'] ['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.pattern_classification.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci', '--schema'] loading pickled environment... done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' /casa/host/src/capsul/master/doc/source/api/qt_apps.rst:5: WARNING: Could not import class or module 'capsul.qt_apps.main_window' specified for inheritance diagram WARNING: autodoc: failed to import module 'main_window' from module 'capsul.qt_apps'; the following exception was raised: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py) WARNING: autodoc: failed to import module 'pipeline_viewer_app' from module 'capsul.qt_apps'; the following exception was raised: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py) /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb:1721: ERROR: Duplicate substitution definition name: "xml pipeline". /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb:1722: ERROR: Duplicate substitution definition name: "xml pipeline controller". looking for now-outdated files... none found pickling environment... [autosummary] generating autosummary for: api.rst, index.rst, process_docs/deepsulci/pattern_classification/index.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.svm_labeling.PatternSVMLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.svm_training.PatternSVMTraining.rst, process_docs/deepsulci/pattern_classification/process/index.rst, process_docs/deepsulci/sulci_labeling/index.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst, process_docs/deepsulci/sulci_labeling/process/index.rst done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 20%] api/index writing output... [ 40%] api/qt_apps writing output... [ 60%] index writing output... [ 80%] tutorial/capsul_tutorial WARNING: Failed to import deepsulci.pattern_classification.method.svm. Possible hints: * ModuleNotFoundError: No module named 'pcl' * AttributeError: module 'deepsulci.pattern_classification.method' has no attribute 'svm' pcl.registration missing ! building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 11 source files that are out of date updating environment: 0 added, 12 changed, 0 removed reading sources... [ 8%] api writing output... [100%] user_guide_tree/index generating indices... genindex py-modindex done /usr/lib/python3/dist-packages/nbsphinx.py:2094: RemovedInSphinx80Warning: The alias 'sphinx.util.status_iterator' is deprecated, use 'sphinx.util.display.status_iterator' instead. Check CHANGES for Sphinx API modifications. status_iterator = sphinx.util.status_iterator copying linked files... copying notebooks ... [100%] tutorial/capsul_tutorial.ipynb highlighting module code... [ 1%] PyQt6.QtCore highlighting module code... [ 3%] capsul.attributes.attributes_factory highlighting module code... [ 4%] capsul.attributes.attributes_schema highlighting module code... [ 5%] capsul.attributes.completion_engine highlighting module code... [ 7%] capsul.attributes.completion_engine_factory highlighting module code... [ 8%] capsul.attributes.completion_engine_iteration highlighting module code... [ 9%] capsul.attributes.fom_completion_engine highlighting module code... [ 11%] capsul.engine highlighting module code... [ 12%] capsul.engine.database highlighting module code... [ 13%] capsul.engine.database_json highlighting module code... [ 14%] capsul.engine.database_populse highlighting module code... [ 16%] capsul.engine.module.attributes highlighting module code... 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