Started
Running as <a href='/builds/user/brainvisa' class='jenkins-table__link model-link model-link--float'>brainvisa</a>
----------------------------------------
$ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=soma-env-0.0 -- sources
----------------------------------------


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/aims-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/aims-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/anatomist-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/anatomist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/axon
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/bioprocessing
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainrat-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainrat-private
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-share
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-spm
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa_freesurfer
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/capsul
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/constellation-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/constellation-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/cortical_surface-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/cortical_surface-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/disco
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/highres-cortex
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morpho-deepsulci
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morphologist-baby
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morphologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Depuis <a href='https://github.com/brainvisa/morphologist-gpl'>https://github.com/brainvisa/morphologist-gpl</a>
   d775a87c..9e70bcf6  soma-env-6.0 -&gt; origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morphologist-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morphologist-ui
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/nuclear_imaging-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/nuclear_imaging-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/populse-db
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/primatologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/soma-base
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/soma-io
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/soma-workflow
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/sulci-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.

Summary of Git repositories in /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src
========================================================================================
┌───── * uncommitted working tree changes
│┌──── + uncommitted index changes
││┌─── $ stash present
│││┌── % untracked files
││││ ┌ HEAD
││││ │                 ┌ update status
││││ │                 │ ┌ bv_maker upstream state
││││ │                 │ │  ┌ Git upstream state
││││ │                 │ │  │┌ Directory
     master (44f98bf3) ✓ U=  aims-free
     master (f21dccc)  ✓ U=  aims-gpl
     master (31e1202b) ✓ U=  anatomist-free
     master (f98a01b)  ✓ U=  anatomist-gpl
     master (98d37787) ✓ U=  axon
     master (cb8a653)  ✓ U=  bioprocessing
     master (a38f070)  ✓ U=  brainrat-gpl
     master (aaecedf)  ✓ U=  brainrat-private
     master (850b6f3)  ✓ U=  brainvisa-cmake
     master (850b6f3)  ✓ U=  brainvisa-cmake
     master (d810004)  ✓ U=  brainvisa-share
     master (50f4b51)  ✓ U=  brainvisa-spm
     master (b4a9fda)  ✓ U=  brainvisa_freesurfer
     master (cb9674af) ✓ U=  capsul
     master (4b11ec2)  ✓ U=  constellation-gpl
     master (2cb7705)  ✓ U=  constellation-nonfree
     master (571abe4)  ✓ U=  cortical_surface-gpl
     master (9b0400d)  ✓ U=  cortical_surface-nonfree
     master (0d1f8b3)  ✓ U=  disco
     master (efaab07)  ✓ U=  highres-cortex
     master (1ccf0e8)  ✓ U=  morpho-deepsulci
     master (facd37e)  ✓ U=  morphologist-baby
     master (bcaddf2c) ✓ U=  morphologist-gpl
     master (220389f)  ✓ U=  morphologist-nonfree
     master (a83f257)  ✓ U=  morphologist-ui
     master (0337519e) ✓ U=  nuclear_imaging-gpl
     master (fd0da1c)  ✓ U=  nuclear_imaging-nonfree
     master (b894335)  ✓ U=  populse-db
     master (fdd4bc1)  ✓ U=  primatologist-gpl
     master (e070d19)  ✓ U=  soma-base
     master (5157c30)  ✓ U=  soma-io
     master (487014b)  ✓ U=  soma-workflow
     master (96ef603)  ✓ U=  sulci-nonfree

bv_maker summary:
OK          step sources: /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src, started: 2026/10/15 04:07, stopped: 2026/10/15 04:07
All went good.

Finished: SUCCESS