Started Running as brainvisa ---------------------------------------- $ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=soma-env-0.1 -- sources ---------------------------------------- WARN Encountered 1 warning while parsing the manifest: ⚠ The `project` field is deprecated. Use `workspace` instead. ╭─[/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/pixi.toml:1:1] 1 │ ╭─▶ [project] 2 │ │ name = "soma-env-0.1" 3 │ │ channels = ["pytorch", "nvidia", "conda-forge", "https://brainvisa.info/neuro-forge"] 4 │ │ platforms = ["linux-64"] 5 │ ├─▶ version = "0.1" · ╰──── replace this with 'workspace' 6 │ ╰──── Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/aims-free $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/aims-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/anatomist-free $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/anatomist-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/axon $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/bioprocessing $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainrat-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainrat-private $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-share $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' Depuis https://github.com/brainvisa/brainvisa-share ! [rejeté] 6.0.13 -> 6.0.13 (écraserait l'étiquette existante) ! [rejeté] 6.0.14 -> 6.0.14 (écraserait l'étiquette existante) ! [rejeté] v5.0.0 -> v5.0.0 (écraserait l'étiquette existante) ! [rejeté] v5.0.1 -> v5.0.1 (écraserait l'étiquette existante) ! [rejeté] v5.0.2 -> v5.0.2 (écraserait l'étiquette existante) ! [rejeté] v5.0.3 -> v5.0.3 (écraserait l'étiquette existante) ! [rejeté] v5.0.4 -> v5.0.4 (écraserait l'étiquette existante) ! [rejeté] v5.1.0 -> v5.1.0 (écraserait l'étiquette existante) ! [rejeté] v5.1.1 -> v5.1.1 (écraserait l'étiquette existante) ! [rejeté] v5.1.2 -> v5.1.2 (écraserait l'étiquette existante) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Fetching failed. Please check your Internet connection and access rights to the origin repository. ======================================================================== Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-spm $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa_freesurfer $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/capsul $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/3.0 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/constellation-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/constellation-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/cortical_surface-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/cortical_surface-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/disco $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/highres-cortex $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morpho-deepsulci $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-baby $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-ui $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/nuclear_imaging-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/nuclear_imaging-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/populse-db $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git pull --ff-only Déjà à jour. $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/primatologist-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/soma-base $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/6.0 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/soma-io $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/sulci-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Summary of Git repositories in /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src ======================================================================================== ┌───── * uncommitted working tree changes │┌──── + uncommitted index changes ││┌─── $ stash present │││┌── % untracked files ││││ ┌ HEAD ││││ │ ┌ update status ││││ │ │ ┌ bv_maker upstream state ││││ │ │ │ ┌ Git upstream state ││││ │ │ │ │ ┌ Directory master (229d7e8d) ✓ U= aims-free master (bd28573) ✓ U= aims-gpl master (a7b87c19) ✓ U= anatomist-free capsul3 (c3ecb69) ✓ U= anatomist-gpl capsul3 (05237cd8) ✓ U= axon master (3a5ba4d) ✓ U= bioprocessing master (67b8d33) ✓ U= brainrat-gpl master (6a5058d) ✓ U= brainrat-private master (72ef5c2) ✓ U= brainvisa-cmake master (72ef5c2) ✓ U= brainvisa-cmake master (7d96df0) ✗ fetch failed U+40-44 brainvisa-share master (d2087b5) ✓ U= brainvisa-spm master (1574c5b) ✓ U= brainvisa_freesurfer 3.0 (02318b38) ✓ U= capsul master (110934b) ✓ U= constellation-gpl master (77484c7) ✓ U= constellation-nonfree master (50af02f) ✓ U= cortical_surface-gpl master (f607afc) ✓ U= cortical_surface-nonfree master (3d2a8d0) ✓ U= disco master (1bb4c84) ✓ U= highres-cortex capsul3 (b79781f) ✓ U= morpho-deepsulci master (5dcfbd3) ✓ U= morphologist-baby capsul3 (f3800593) ✓ U= morphologist-gpl master (12c73e8) ✓ U= morphologist-nonfree capsul3 (b101f44) ✓ U= morphologist-ui % master (24016734) ✓ U= nuclear_imaging-gpl master (86cd122) ✓ U= nuclear_imaging-nonfree 3.0 (74153c0) ✓ U= u+46 populse-db master (705fda1) ✓ U= primatologist-gpl 6.0 (a4561c2) ✓ U= soma-base master (a983555) ✓ U= soma-io master (e13410a) ✓ U= sulci-nonfree Traceback (most recent call last): File "/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake/python/brainvisa_cmake/commands.py", line 92, in process logs = getattr(o, method)(*meth_args, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake/python/brainvisa_cmake/sources.py", line 441, in process raise RuntimeError("Error updating one or more Git repositories") RuntimeError: Error updating one or more Git repositories bv_maker summary: FAILED step sources: /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src, started: 2026/04/04 04:47, stopped: 2026/04/04 04:47 There were errors. Traceback (most recent call last): File "/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake/bin/bv_run_pixi_env.py", line 75, in <module> subprocess.check_call(cmd, cwd=wd, env=env) File "/usr/lib/python3.12/subprocess.py", line 413, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['pixi', 'run', '--frozen', 'bv_maker', 'sources']' returned non-zero exit status 1. Finished: FAILURE