Started Running as ha:////4IBfZE0U/6j0Lk9ri0qkNW4L1RLpZ4CEdub6wwX/PKGiAAAAmx+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAzOEgZ+/dLi1CL9pKLEzLyyzOJEAKyRG5PEAAAAbrainvisa ---------------------------------------- $ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=soma-env-0.1 -- sources ---------------------------------------- WARN Encountered 1 warning while parsing the manifest: ⚠ The `project` field is deprecated. Use `workspace` instead. ╭─[/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/pixi.toml:1:1] 1 │ ╭─▶ [project] 2 │ │ name = "soma-env-0.1" 3 │ │ channels = ["pytorch", "nvidia", "conda-forge", "https://brainvisa.info/neuro-forge"] 4 │ │ platforms = ["linux-64"] 5 │ ├─▶ version = "0.1" · ╰──── replace this with 'workspace' 6 │ ╰──── Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/aims-free $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/aims-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/anatomist-free $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/anatomist-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/axon $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/bioprocessing $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainrat-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainrat-private $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-share $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-spm $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa_freesurfer $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/capsul $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/3.0 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/constellation-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/constellation-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/cortical_surface-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/cortical_surface-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/disco $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/highres-cortex $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morpho-deepsulci $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-baby $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' Depuis https://github.com/brainvisa/morphologist-gpl d775a87c..9e70bcf6 soma-env-6.0 -> origin/soma-env-6.0 $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-ui $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/nuclear_imaging-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/nuclear_imaging-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/populse-db $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git pull --ff-only Déjà à jour. $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/primatologist-gpl $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/soma-base $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/6.0 $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. $ pre-commit install pre-commit installed at .git/hooks/pre-commit Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/soma-io $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/sulci-nonfree $ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*' $ git update-ref --no-deref refs/bv_head refs/remotes/origin/master $ git -c remote.origin.skipDefaultUpdate remote update $ git merge --ff-only refs/bv_head Déjà à jour. Summary of Git repositories in /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src ======================================================================================== ┌───── * uncommitted working tree changes │┌──── + uncommitted index changes ││┌─── $ stash present │││┌── % untracked files ││││ ┌ HEAD ││││ │ ┌ update status ││││ │ │ ┌ bv_maker upstream state ││││ │ │ │ ┌ Git upstream state ││││ │ │ │ │ ┌ Directory master (44f98bf3) ✓ U= aims-free master (f21dccc) ✓ U= aims-gpl master (31e1202b) ✓ U= anatomist-free capsul3 (c3ecb69) ✓ U= anatomist-gpl capsul3 (05237cd8) ✓ U= axon master (cb8a653) ✓ U= bioprocessing master (a38f070) ✓ U= brainrat-gpl master (aaecedf) ✓ U= brainrat-private master (850b6f3) ✓ U= brainvisa-cmake master (850b6f3) ✓ U= brainvisa-cmake master (d810004) ✓ U= brainvisa-share master (50f4b51) ✓ U= brainvisa-spm master (b4a9fda) ✓ U= brainvisa_freesurfer 3.0 (02318b38) ✓ U= capsul master (4b11ec2) ✓ U= constellation-gpl master (2cb7705) ✓ U= constellation-nonfree master (571abe4) ✓ U= cortical_surface-gpl master (9b0400d) ✓ U= cortical_surface-nonfree master (0d1f8b3) ✓ U= disco master (efaab07) ✓ U= highres-cortex capsul3 (b79781f) ✓ U= morpho-deepsulci master (facd37e) ✓ U= morphologist-baby capsul3 (f3800593) ✓ U= morphologist-gpl master (220389f) ✓ U= morphologist-nonfree capsul3 (b101f44) ✓ U= morphologist-ui master (0337519e) ✓ U= nuclear_imaging-gpl master (fd0da1c) ✓ U= nuclear_imaging-nonfree 3.0 (b894335) ✓ U= u+121 populse-db master (fdd4bc1) ✓ U= primatologist-gpl 6.0 (a4561c2) ✓ U= soma-base master (5157c30) ✓ U= soma-io master (96ef603) ✓ U= sulci-nonfree bv_maker summary: OK step sources: /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src, started: 2026/10/15 04:47, stopped: 2026/10/15 04:47 All went good. Finished: SUCCESS