Started
Running as <a href='/builds/user/brainvisa' class='jenkins-table__link model-link model-link--float'>brainvisa</a>
----------------------------------------
$ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=soma-env-qt6 -- sources
----------------------------------------


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/aims-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git pull --ff-only
Déjà à jour.
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/aims-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/anatomist-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Depuis <a href='https://github.com/brainvisa/anatomist-free'>https://github.com/brainvisa/anatomist-free</a>
   b79c388c..9f7fe715  soma-env-6.0 -&gt; origin/soma-env-6.0
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git pull --ff-only
Déjà à jour.
$ git merge --ff-only refs/bv_head
astuce : Des branches divergentes ne peuvent pas être gérées en avance rapide, vous devez soit :
astuce :
astuce : 	git merge --no-ff
astuce :
astuce : ou :
astuce :
astuce : 	git rebase
astuce :
astuce : Disable this message with "git config set advice.diverging false"
fatal : Pas possible d'avancer rapidement, abandon.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The upstream branch could not be merged, please refer to the error message
above.
========================================================================


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/anatomist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/axon
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/bioprocessing
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainrat-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainrat-private
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa-share
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa-spm
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa_freesurfer
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/capsul
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/constellation-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/constellation-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/cortical_surface-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/cortical_surface-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/disco
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/highres-cortex
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/morpho-deepsulci
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/morphologist-baby
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/morphologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/morphologist-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git pull --ff-only
Déjà à jour.
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/morphologist-ui
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/populse-db
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/primatologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/soma-base
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git pull --ff-only
Déjà à jour.
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/soma-io
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git pull --ff-only
Déjà à jour.
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/soma-workflow
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git pull --ff-only
Déjà à jour.
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/sulci-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/soma-env-6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.

Summary of Git repositories in /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src
========================================================================================
┌───── * uncommitted working tree changes
│┌──── + uncommitted index changes
││┌─── $ stash present
│││┌── % untracked files
││││ ┌ HEAD
││││ │                       ┌ update status
││││ │                       │              ┌ bv_maker upstream state
││││ │                       │              │     ┌ Git upstream state
││││ │                       │              │     │  ┌ Directory
     sip-6-15 (5a790aa9)     ✓              U+11  u= aims-free
     soma-env-6.0 (333d6d9)  ✓              U=       aims-gpl
     qt6 (2475ee08)          ✗ merge failed U+1-2 u= anatomist-free
     soma-env-6.0 (f98a01b)  ✓              U=       anatomist-gpl
     soma-env-6.0 (98d37787) ✓              U=       axon
     soma-env-6.0 (cb8a653)  ✓              U=       bioprocessing
     soma-env-6.0 (a38f070)  ✓              U=       brainrat-gpl
     soma-env-6.0 (aaecedf)  ✓              U=       brainrat-private
   % master (850b6f3)        ✓              U=       brainvisa-cmake
   % master (850b6f3)        ✓              U=       brainvisa-cmake
     soma-env-6.0 (de9ad09)  ✓              U=       brainvisa-share
     soma-env-6.0 (50f4b51)  ✓              U=       brainvisa-spm
     soma-env-6.0 (b4a9fda)  ✓              U=       brainvisa_freesurfer
     soma-env-6.0 (88aa7fab) ✓              U=       capsul
     soma-env-6.0 (4b11ec2)  ✓              U=       constellation-gpl
     soma-env-6.0 (2cb7705)  ✓              U=       constellation-nonfree
     soma-env-6.0 (571abe4)  ✓              U=       cortical_surface-gpl
     soma-env-6.0 (9b0400d)  ✓              U=       cortical_surface-nonfree
     soma-env-6.0 (a5ea258)  ✓              U=       disco
     soma-env-6.0 (efaab07)  ✓              U=       highres-cortex
     soma-env-6.0 (1ccf0e8)  ✓              U=       morpho-deepsulci
     soma-env-6.0 (facd37e)  ✓              U=       morphologist-baby
     soma-env-6.0 (bcaddf2c) ✓              U=       morphologist-gpl
     qt6 (d204b72)           ✓              U+2   u= morphologist-nonfree
     soma-env-6.0 (a83f257)  ✓              U=       morphologist-ui
     soma-env-6.0 (efe0f30)  ✓              U=       populse-db
     soma-env-6.0 (fdd4bc1)  ✓              U=       primatologist-gpl
     qt6 (ffc288d)           ✓              U+4   u= soma-base
     qt6 (8266663)           ✓              U+13  u= soma-io
     qt6 (72202ab)           ✓              U+1   u= soma-workflow
     soma-env-6.0 (f3dc66a)  ✓              U=       sulci-nonfree
Traceback (most recent call last):
  File "/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa-cmake/python/brainvisa_cmake/commands.py", line 88, in process
    logs = getattr(o, method)(*meth_args,
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa-cmake/python/brainvisa_cmake/sources.py", line 441, in process
    raise RuntimeError("Error updating one or more Git repositories")
RuntimeError: Error updating one or more Git repositories

bv_maker summary:
FAILED      step sources: /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src, started: 2026/09/24 06:47, stopped: 2026/09/24 06:47
There were errors.
Traceback (most recent call last):
  File "/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-qt6/src/brainvisa-cmake/bin/bv_run_pixi_env.py", line 75, in &lt;module&gt;
    subprocess.check_call(cmd, cwd=wd, env=env)
  File "/usr/lib/python3.12/subprocess.py", line 413, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['pixi', 'run', '--frozen', 'bv_maker', 'sources']' returned non-zero exit status 1.

Finished: FAILURE