Generating docs for compound anatomist::QAWindowDrag...
Generating docs for compound anatomist::GLCaps...
Generating docs for compound anatomist::GLWidgetManager...
Generating docs for compound anatomist::ViewState...
Generating docs for compound anatomist::SliceViewState...
Generating docs for compound anatomist::AWindowCreator...
Generating docs for compound anatomist::AWindowFactory...
Generating docs for compound anatomist::AWindowCreatorFunc...
Generating docs for compound anatomist::AWindow...
Generating docs for compound anatomist::AnnotationAction...
Generating docs for compound anatomist::BoxViewSlice...
Generating docs for compound anatomist::ConnectivityMatrixAction...
Generating docs for compound anatomist::ConnectivityMatrixControl...
Generating docs for compound anatomist::OrientationAnnotation...
Generating docs for compound anatomist::Cursor...
Generating docs for compound anatomist::Control3D...
Generating docs for compound anatomist::Select3DControl...
Generating docs for compound anatomist::FlightControl...
Generating docs for compound anatomist::ObliqueControl...
Generating docs for compound anatomist::TransformControl...
Generating docs for compound anatomist::CutControl...
Generating docs for compound anatomist::WindowActions...
Generating docs for compound anatomist::LinkAction...
Generating docs for compound anatomist::MenuAction...
Generating docs for compound anatomist::SelectAction...
Generating docs for compound anatomist::Zoom3DAction...
Generating docs for compound anatomist::Translate3DAction...
Generating docs for compound anatomist::Sync3DAction...
Generating docs for compound anato[100%] Create "share/doc/5.1"
[100%] Built target constellation-doxygen
[100%] Built target bioprocessing-doxygen
[100%] Built target cortical_surface-doxygen
[100%] Create "share/doc/5.1"
[100%] Built target brainrat-private-devdoc
[100%] Create "share/doc/5.1"
[100%] Create "share/doc/5.1"
[100%] Built target sulci-nonfree-devdoc
[100%] Built target primatologist-gpl-devdoc
[100%] Built target highres-cortex-devdoc
[100%] Create "share/doc/5.1"
[100%] Built target cortical_surface-nonfree-devdoc
[100%] Create "share/doc/5.1"
[100%] Built target primatologist-gpl-doc
[100%] Built target brainrat-private-doc
[100%] Built target constellation-nonfree-devdoc
[100%] Built target cortical_surface-nonfree-doc
[100%] Built target highres-cortex-doc
[100%] Built target sulci-nonfree-doc
[100%] Built target constellation-nonfree-doc
[100%] Create "share/doc/5.1"
/casa/host/build/include/anatomist/object/Object.h:368: warning: Unsupported xml/html tag <T> found
[100%] Built target bioprocessing-devdoc
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
warning: Inheritance graph for 'anatomist::RegularCommand' not generated, too many nodes (56), threshold is 50. Consider increasing DOT_GRAPH_MAX_NODES.
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Registry.h:80: warning: Found unknown command '\Ref'
/casa/host/build/include/anatomist/processor/Registry.h:60: warning: Found unknown command '\URL'
/casa/host/build/include/anatomist/processor/Registry.h:80: warning: Found unknown command '\Ref'
/casa/host/build/include/anatomist/processor/Registry.h:85: warning: The following parameters of anatomist::Registry::add(const std::string &command, Command::Reader function, const carto::SyntaxSet &syntax) are not documented:
parameter 'function'
parameter 'syntax'
/casa/host/build/include/anatomist/processor/Reader.h:64: warning: The following parameter of anatomist::CommandReader::CommandReader(const std::string &filename, carto::MutexRcPtr< CommandContext > &context) is not documented:
parameter 'context'
mist::MovieAction...
Generating docs for compound anatomist::SliceAction...
Generating docs for compound anatomist::DragObjectAction...
Generating docs for compound anatomist::SortMeshesPolygonsAction...
Generating docs for compound anatomist::ObjectStatAction...
Generating docs for compound anatomist::LabelEditAction...
Generating docs for compound anatomist::Trackball...
Generating docs for compound anatomist::ContinuousTrackball...
Generating docs for compound anatomist::KeyFlightAction...
Generating docs for compound anatomist::TrackCutAction...
Generating docs for compound anatomist::CutSliceAction...
Generating docs for compound anatomist::TrackOblique...
Generating docs for compound anatomist::TrackObliqueSlice...
Generating docs for compound anatomist::Transformer...
Generating docs for compound anatomist::TranslaterAction...
Generating docs for compound anatomist::PlanarTransformer...
Generating docs for compound anatomist::ResizerAction...
Generating docs for compound anatomist::GLObjectList...
Generating docs for compound anatomist::GLObjectVector...
Generating docs for compound anatomist::GLMObject...
Generating docs for compound anatomist::ObjectVectorIterator...
Generating docs for compound anatomist::const_ObjectVectorIterator...
Generating docs for compound anatomist::ObjectVector...
Generating docs for compound anatomist::BaseIterator...
Generating docs for compound anatomist::AIterator...
Generating docs for compound anatomist::MObject...
Generating docs for compound anatomist::Fusion2D...
Generating docs for compound anatomist::Fusion3D...
Generating docs for compound anatomist::ObjectListIterator...
Generating docs for compound anatomist::const_ObjectListIterator...
Generating docs for compound anatomist::ObjectList...
Generating docs for compound anatomist::Slice...
Generating docs for compound anatomist::AVolumeBase...
Generating docs for compound anatomist::AVolume...
Generating docs for compound anatomist::AVolumeView...
Generating docs for compound anatomist::CommandContext...
Generating docs for compound anatomist::ErrorMessage...
Generating docs for compound anatomist::OutputEvent...
Generating docs for compound anatomist::OutputEventFilter...
Generating docs for compound anatomist::EventHandler...
Generating docs for compound anatomist::APipeReader...
Generating docs for compound anatomist::Unserializer...
Generating docs for compound anatomist::CommandServer...
Generating docs for compound anatomist::Command...
Generating docs for compound anatomist::RegularCommand...
Generating docs for compound anatomist::SerializingCommand...
Generating docs for compound anatomist::WaitCommand...
Generating docs for compound anatomist::Processor...
Generating docs for nested compound anatomist::Processor::Memo...
Generating docs for compound anatomist::Registry...
Generating docs for compound anatomist::CommandReader...
Generating docs for compound anatomist::CommandWriter...
Generating docs for compound anatomist::Serializer...
Generating docs for compound anatomist::Fusion2dMethod...
Generating docs for compound anatomist::Fusion3dMethod...
Generating docs for compound anatomist::PlanarFusion3dMethod...
Generating docs for compound anatomist::FusionTextureMethod...
Generating docs for compound anatomist::FusionMultiTextureMethod...
Generating docs for compound anatomist::FusionCutMeshMethod...
Generating docs for compound anatomist::Fusion2DMeshMethod...
Generating docs for compound anatomist::FusionSliceMethod...
Generating docs for compound anatomist::FusionRGBAVolumeMethod...
Generating docs for compound anatomist::FusionClipMethod...
Generating docs for compound anatomist::FusionTesselationMethod...
Generating docs for compound anatomist::ConnectivityMatrixFusionMethod...
Generating docs for compound anatomist::VectorFieldFusionMethod...
Generating docs for compound anatomist::FusionMethod...
Generating docs for compound anatomist::FusionFactory...
Generating docs for compound anatomist::StdModule...
Generating docs for compound anatomist::AConnectivityMatrix...
Generating docs for compound anatomist[100%] Built target bioprocessing-doc
/casa/host/build/include/anatomist/constrainteditor/wConstraintEditor.h:61: warning: The following parameter of anatomist::ConstraintEditorWindow::update(const anatomist::Observable *observable, void *arg) is not documented:
parameter 'arg'
/casa/host/build/include/anatomist/action/levelsetaction.h:64: warning: The following parameter of anatomist::RoiLevelSetActionSharedData::update(const Observable *observable, void *arg) is not documented:
parameter 'arg'
/casa/host/build/include/anatomist/action/paintaction.h:124: warning: The following parameters of anatomist::PaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm)=0 are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:177: warning: The following parameters of anatomist::PointPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:200: warning: The following parameters of anatomist::SquarePaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:224: warning: The following parameters of anatomist::DiskPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:259: warning: The following parameters of anatomist::BallPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:296: warning: The following parameter of anatomist::PaintActionSharedData::update(const Observable *observable, void *arg) is not documented:
parameter 'arg'
/casa/host/build/include/anatomist/action/roimanagementaction.h:199: warning: The following parameter of anatomist::RoiManagementActionSharedData::update(const Observable *observable, void *arg) is not documented:
parameter 'arg'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'ref' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'obj' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'refId' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'unser' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cGetConnThres.h:68: warning: The following parameters of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0) are not documented:
parameter 'image'
parameter 'requestid'
parameter 'context'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'ref' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'obj' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'refId' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'unser' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cSetConnThres.h:66: warning: The following parameters of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0) are not documented:
parameter 'image'
parameter 'assignLowThreshold'
parameter 'lowThres'
parameter 'assignHighThreshold'
parameter 'highThres'
parameter 'context'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/action/dynsegmentaction.h:65: warning: The following parameter of anatomist::RoiDynSegmentAction::update(const anatomist::Observable *observable, void *arg) is not documented:
parameter 'arg'
reading sources... [100%] pyaims_modules_api
::ASparseMatrix...
Generating docs for compound anatomist::GLItem...
Generating docs for compound anatomist::Primitive...
Generating docs for compound anatomist::GLList...
Generating docs for compound anatomist::GLTexture...
Generating docs for compound anatomist::GLItemList...
Generating docs for compound anatomist::GLNoExecItemList...
Generating docs for compound anatomist::ConstraintEditorWindow...
Generating docs for compound anatomist::NodeSelectionAction...
Generating docs for compound anatomist::NodeSelectionControl...
Generating docs for compound anatomist::HierarchyEditor...
Generating docs for compound anatomist::ErpReader...
Generating docs for compound anatomist::AInterpolerMethod...
Generating docs for compound anatomist::AInterpoler...
Generating docs for compound anatomist::ALandmarkFactory...
Generating docs for compound anatomist::PlaneFusionMethod...
Generating docs for compound anatomist::CylinderFusionMethod...
Generating docs for compound anatomist::ASurfMatchMethod...
Generating docs for compound anatomist::ASurfMatcher...
Generating docs for compound anatomist::AnaSurfMatch...
Generating docs for compound anatomist::SurfpaintModule...
Generating docs for compound anatomist::SurfpaintTools...
Generating docs for compound anatomist::SurfpaintToolsAction...
Generating docs for compound anatomist::SurfpaintToolsControl...
Generating docs for compound anatomist::VolRenderFusionMethod...
Generating docs for compound anatomist::VolRenderShaderFusionMethod...
Generating docs for compound anatomist::VolRenderModule...
Generating docs for compound anatomist::VolRender...
Generating docs for compound anatomist::VolRenderShader...
Generating docs for compound anatomist::ProfileModule...
Generating docs for compound anatomist::RoiLevelSetActionSharedData...
Generating docs for compound anatomist::RoiLevelSetAction...
Generating docs for compound anatomist::RoiLabelNamingAction...
Generating docs for compound anatomist::ChangesItem...
Generating docs for compound anatomist::ChangedBucketsItem...
Generating docs for compound anatomist::RoiChangeProcessor...
Generating docs for compound anatomist::PaintStrategy...
Generating docs for compound anatomist::PointPaintStrategy...
Generating docs for compound anatomist::SquarePaintStrategy...
Generating docs for compound anatomist::DiskPaintStrategy...
Generating docs for compound anatomist::BallPaintStrategy...
Generating docs for compound anatomist::PaintActionSharedData...
Generating docs for compound anatomist::PaintAction...
Generating docs for compound anatomist::RoiBlobSegmentationAction...
Generating docs for compound anatomist::PaintControl...
Generating docs for compound anatomist::RoiLevelSetControl...
Generating docs for compound anatomist::RoiLabelNamingControl...
Generating docs for compound anatomist::RoiManagementActionSharedData...
Generating docs for compound anatomist::RoiManagementAction...
Generating docs for compound anatomist::RoiManagementControl...
Generating docs for compound anatomist::RoiBaseModule...
Generating docs for compound anatomist::CreateGraphCommand...
Generating docs for compound anatomist::GetConnThresholdCommand...
Generating docs for compound anatomist::SetConnThresholdCommand...
Generating docs for compound anatomist::AddNodeCommand...
Generating docs for compound anatomist::PaintParamsCommand...
Generating docs for compound anatomist::RoiDynSegmentAction...
Generating docs for compound anatomist::RoiMorphoMathAction...
Generating docs for compound anatomist::RoiDynSegmentControl...
Generating docs for compound anatomist::RoiAlgoModule...
Generating docs for compound anatomist::HistogramModule...
Generating docs for namespace anatomist::internal
Generating docs for compound anatomist::internal::ColorTraitsType...
Generating docs for compound anatomist::internal::PaletteWinExtensionActions...
Generating docs for compound anatomist::internal::VectorFieldCoordSpinBox...
Generating docs for compound anatomist::internal::AGraphicsView...
Generating docs for compound anatomist::internal::AGraphicsScene...
Generating docs for compound/casa/host/build/include/anatomist/application/anatomist_doc.h:41: warning: image file anatomist.png is not found in IMAGE_PATH: assuming external image.
/casa/host/build/include/anatomist/application/anatomist_doc.h:41: warning: image file anatomist.png is not found in IMAGE_PATH: assuming external image.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:46,477::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:46,574::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:46,642::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'.
anatomist::internal::TransformerActionData...
Generating docs for compound anatomist::internal::NoDragSlider...
Generating docs for compound anatomist::internal::CommandReader_Bridge...
Generating docs for namespace carto
Generating docs for compound carto::GLWidget...
Generating docs for namespace Vr
Generating docs for compound Vr::Creator...
Generating docs for compound Vr::CubeZBuffer...
Generating docs for compound Vr::MIPShader...
Generating docs for compound Vr::MPVRShader...
Generating docs for compound Vr::RfmtShader...
Generating docs for compound Vr::Shader...
Generating docs for compound Vr::ShaderFactory...
Generating docs for compound Vr::Slicing...
Generating docs for compound Vr::SumShader...
Generating docs for compound Vr::Vector3d...
Generating docs for compound Vr::VRShader...
Generating docs for compound Vr::VrSingleton...
Generating graph info page...
Generating directory documentation...
Generating dependency graph for directory anatomist/action
Generating dependency graph for directory anatomist
Generating dependency graph for directory anatomist/application
Generating dependency graph for directory anatomist/browser
Generating dependency graph for directory anatomist/bucket
Generating dependency graph for directory anatomist/color
Generating dependency graph for directory anatomist/commands
Generating dependency graph for directory anatomist/constrainteditor
Generating dependency graph for directory anatomist/control
Generating dependency graph for directory anatomist/controler
Generating dependency graph for directory anatomist/erpio
Generating dependency graph for directory anatomist/graph
Generating dependency graph for directory anatomist/hierarchy
Generating dependency graph for directory anatomist/interface
Generating dependency graph for directory anatomist/interpoler
Generating dependency graph for directory anatomist/landmark
Generating dependency graph for directory anatomist/mobject
Generating dependency graph for directory anatomist/module
Generating dependency graph for directory anatomist/object
Generating dependency graph for directory anatomist/processor
Generating dependency graph for directory anatomist/reference
Generating dependency graph for directory anatomist/selection
Generating dependency graph for directory anatomist/sparsematrix
Generating dependency graph for directory anatomist/stdmod
Generating dependency graph for directory anatomist/surface
Generating dependency graph for directory anatomist/surfmatcher
Generating dependency graph for directory anatomist/volume
Generating dependency graph for directory anatomist/window
Generating dependency graph for directory anatomist/window3D
Generating dependency graph for directory anatomist/winhisto
Generating dependency graph for directory anatomist/winprof
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating graphical class hierarchy...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
writing tag file...
Running plantuml with JAVA...
Running dot...
lookup cache used 17500/65536 hits=98897 misses=21427
finished...
[100%] Built target anatomist-doxygen
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:46,725::INFO::Pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM.png'.
[100%] Create "share/doc/5.1"
[100%] Built target pyanatomist-doxygen
[100%] Built target anatomist-free-devdoc
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:46,793::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'.
[100%] Create "share/doc/5.1"
[100%] Built target anatomist-free-doc
[100%] Built target anatomist-gpl-devdoc
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:46,867::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:46,868::INFO::Summary: '14' files written for module 'capsul'.
[100%] Built target anatomist-gpl-doc
WARNING: autodoc: failed to import class 'BundleTransformer' from module 'soma.aimsalgo'; the following exception was raised:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/dist-packages/sphinx/util/inspect.py", line 341, in safe_getattr
return getattr(obj, name, *defargs)
AttributeError: module 'soma.aimsalgo' has no attribute 'BundleTransformer'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/dist-packages/sphinx/ext/autodoc/importer.py", line 106, in import_object
obj = attrgetter(obj, mangled_name)
File "/usr/local/lib/python3.10/dist-packages/sphinx/ext/autodoc/__init__.py", line 324, in get_attr
return autodoc_attrgetter(self.env.app, obj, name, *defargs)
File "/usr/local/lib/python3.10/dist-packages/sphinx/ext/autodoc/__init__.py", line 2769, in autodoc_attrgetter
return safe_getattr(obj, name, *defargs)
File "/usr/local/lib/python3.10/dist-packages/sphinx/util/inspect.py", line 357, in safe_getattr
raise AttributeError(name) from exc
AttributeError: BundleTransformer
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo:1: WARNING: duplicate object description of soma.aimsalgo, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.getBrain:5: WARNING: Definition list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.getWhite:5: WARNING: Definition list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Gaussian3DSmoothing_DOUBLE:1: WARNING: duplicate object description of soma.aimsalgo.Gaussian3DSmoothing_DOUBLE, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Gaussian3DSmoothing_DOUBLE.doit:1: WARNING: duplicate object description of soma.aimsalgo.Gaussian3DSmoothing_DOUBLE.doit, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Gaussian3DSmoothing_FLOAT:1: WARNING: duplicate object description of soma.aimsalgo.Gaussian3DSmoothing_FLOAT, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Gaussian3DSmoothing_S16:1: WARNING: duplicate object description of soma.aimsalgo.Gaussian3DSmoothing_S16, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Gaussian3DSmoothing_S32:1: WARNING: duplicate object description of soma.aimsalgo.Gaussian3DSmoothing_S32, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Gaussian3DSmoothing_U16:1: WARNING: duplicate object description of soma.aimsalgo.Gaussian3DSmoothing_U16, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Gaussian3DSmoothing_U32:1: WARNING: duplicate object description of soma.aimsalgo.Gaussian3DSmoothing_U32, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Gaussian3DSmoothing_U8:1: WARNING: duplicate object description of soma.aimsalgo.Gaussian3DSmoothing_U8, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher:1: WARNING: duplicate object description of soma.aimsalgo.Mesher, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.SmoothingType:1: WARNING: duplicate object description of soma.aimsalgo.Mesher.SmoothingType, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.doit:1: WARNING: duplicate object description of soma.aimsalgo.Mesher.doit, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.getBrain:1: WARNING: duplicate object description of soma.aimsalgo.Mesher.getBrain, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.getBrain:5: WARNING: Definition list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.getWhite:1: WARNING: duplicate object description of soma.aimsalgo.Mesher.getWhite, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.getWhite:5: WARNING: Definition list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.setDecimation:1: WARNING: duplicate object description of soma.aimsalgo.Mesher.setDecimation, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.setSmoothing:1: WARNING: duplicate object description of soma.aimsalgo.Mesher.setSmoothing, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.setSmoothingLaplacian:1: WARNING: duplicate object description of soma.aimsalgo.Mesher.setSmoothingLaplacian, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Mesher.setSmoothingSpring:1: WARNING: duplicate object description of soma.aimsalgo.Mesher.setSmoothingSpring, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_DOUBLE.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_DOUBLE.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_FLOAT.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_FLOAT.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_HSV.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_HSV.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_POINT3DF.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_POINT3DF.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_RGB.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_RGB.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_RGBA.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_RGBA.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_S16.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_S16.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_S32.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_S32.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U16.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U16.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U32.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U32.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U8.reset:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.SplineResampler_U8.reset:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.resampleBucket:1: WARNING: duplicate object description of soma.aimsalgo.resampleBucket, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.transformBucketDirect:1: WARNING: duplicate object description of soma.aimsalgo.transformBucketDirect, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.transformGraph:1: WARNING: duplicate object description of soma.aimsalgo.transformGraph, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.transformMesh:1: WARNING: duplicate object description of soma.aimsalgo.transformMesh, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.correctB0:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.correctB0, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.fix_b1_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.fix_b1_map, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_B0_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.make_B0_map, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_B1_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.make_B1_map, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_B1_map:10: WARNING: Bullet list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_flip_angle_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.make_flip_angle_map, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_flip_angle_map:9: WARNING: Bullet list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.GREData2FlipAngles:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.GREData2FlipAngles, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.correct_bias:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.correct_bias, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.correct_sensitivity_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.correct_sensitivity_map, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.t1mapping_VFA:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.t1mapping_VFA, other instance in pyaims_modules_api, use :noindex: for one of them
/casa/host/build/python/soma/wip/aimsalgo/samplables/superquadricsamplable.py:docstring of soma.wip.aimsalgo.samplables.superquadricsamplable.SuperQuadricSamplable:5: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aims/apctools.py:docstring of soma.aims.apctools.apcRead:9: WARNING: Block quote ends without a blank line; unexpected unindent.
WARNING: autodoc: failed to import module 'diff' from module 'soma.aims'; the following exception was raised:
No module named 'soma.aims.diff'
/casa/host/build/python/soma/aims/labelstools.py:docstring of soma.aims.labelstools.read_labels:9: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aims/labelstools.py:docstring of soma.aims.labelstools.read_labels:13: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aims/lazy_read_data.py:docstring of soma.aims.lazy_read_data.LazyReadData:55: WARNING: Inline emphasis start-string without end-string.
/casa/host/build/python/soma/aims/texturetools.py:docstring of soma.aims.texturetools.vertex_texture_to_polygon_texture:14: WARNING: Definition list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/mesh_coordinates_sphere_resampling.py:docstring of soma.aimsalgo.mesh_coordinates_sphere_resampling.sphere_mesh_from_distance_map:16: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/mesh_coordinates_sphere_resampling.py:docstring of soma.aimsalgo.mesh_coordinates_sphere_resampling.sphere_mesh_from_distance_map:17: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.correctB0:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.correctB0, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.fix_b1_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.fix_b1_map, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_B0_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.make_B0_map, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_B1_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.make_B1_map, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_B1_map:10: WARNING: Bullet list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_flip_angle_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.BAFIData.make_flip_angle_map, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.BAFIData.make_flip_angle_map:9: WARNING: Bullet list ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.GREData2FlipAngles:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.GREData2FlipAngles, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.correct_bias:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.correct_bias, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.correct_sensitivity_map:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.correct_sensitivity_map, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/t1mapping.py:docstring of soma.aimsalgo.t1mapping.t1mapping_VFA:1: WARNING: duplicate object description of soma.aimsalgo.t1mapping.t1mapping_VFA, other instance in pyaims_aimsalgo, use :noindex: for one of them
/casa/host/build/python/soma/aimsalgo/texture_cleaning.py:docstring of soma.aimsalgo.texture_cleaning.clean_texture:6: ERROR: Unexpected indentation.
/casa/host/build/python/soma/aimsalgo/texture_cleaning.py:docstring of soma.aimsalgo.texture_cleaning.clean_texture:7: WARNING: Block quote ends without a blank line; unexpected unindent.
looking for now-outdated files... none found
pickling environment... /casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:47,344::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:47,344::INFO::Found '38' process(es) in 'morphologist.capsul'.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:47,344::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
done
checking consistency... /casa/host/src/aims/aims-free/5.1/pyaims/doc/sphinx/pyaims_aimsalgo_examples.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 33%] index
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:48,710::ERROR::Traceback (most recent call last):
File "/casa/host/src/capsul/5.1/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 11, in <module>
from pcl import registration as reg
ImportError: cannot import name 'registration' from 'pcl' (/usr/lib/python3/dist-packages/pcl/__init__.py)
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:48,710::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:48,710::ERROR::Traceback (most recent call last):
File "/casa/host/src/capsul/5.1/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 11, in <module>
from pcl import registration as reg
ImportError: cannot import name 'registration' from 'pcl' (/usr/lib/python3/dist-packages/pcl/__init__.py)
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:48,710::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_view.py::2025-11-25 03:56:48,711::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,405::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,410::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
writing output... [ 66%] pyaims_aimsalgo
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,536::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,543::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,579::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,626::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,636::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,657::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,668::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,676::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:49,683::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,327::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,339::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,350::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,350::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,350::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,351::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,352::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,352::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,353::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,354::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,355::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,355::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,355::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,356::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,357::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,360::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,361::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,362::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,362::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,363::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,364::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,364::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,365::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,365::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,366::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,366::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,367::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,368::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,369::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,369::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,370::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,371::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,371::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,372::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,373::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,374::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,374::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,375::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,376::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,380::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,380::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,381::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,382::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/process/index.rst'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,382::INFO::process: '38' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/process.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,382::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/index.rst'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:50,382::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul.
writing output... [100%] pyaims_modules_api
generating CAPSUL processes docs...
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist', '--schema']
loading pickled environment...
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.doit:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.doit:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.ref:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_DOUBLE.setRef:1: WARNING: more than one target found for cross-reference 'Volume_DOUBLE': soma.aims.Volume_DOUBLE, soma.aims.soma.aims.Volume_DOUBLE
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_FLOAT.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_FLOAT.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_FLOAT.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_FLOAT.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_FLOAT.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_FLOAT.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_HSV.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_HSV.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_HSV.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_HSV.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_HSV.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_HSV.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_POINT3DF.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_POINT3DF.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_POINT3DF.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_POINT3DF.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_POINT3DF.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_POINT3DF.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.doit:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.doit:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.ref:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGB.setRef:1: WARNING: more than one target found for cross-reference 'Volume_RGB': soma.aims.Volume_RGB, soma.aims.soma.aims.Volume_RGB
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.doit:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.doit:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.ref:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_RGBA.setRef:1: WARNING: more than one target found for cross-reference 'Volume_RGBA': soma.aims.Volume_RGBA, soma.aims.soma.aims.Volume_RGBA
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.doit:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.doit:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.ref:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S16.setRef:1: WARNING: more than one target found for cross-reference 'Volume_S16': soma.aims.Volume_S16, soma.aims.soma.aims.Volume_S16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.doit:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.doit:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.ref:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_S32.setRef:1: WARNING: more than one target found for cross-reference 'Volume_S32': soma.aims.Volume_S32, soma.aims.soma.aims.Volume_S32
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.doit:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.doit:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.ref:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample_inv:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample_inv:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Transformation3d': soma.aims.soma.Transformation3d, soma.aims.Transformation3d
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.resample_inv_to_vox:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U16.setRef:1: WARNING: more than one target found for cross-reference 'Volume_U16': soma.aims.Volume_U16, soma.aims.soma.aims.Volume_U16
/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U32.doit:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
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/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U32.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
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/casa/host/build/python/soma/aimsalgo/__init__.py:docstring of soma.aimsalgo.Resampler_U8.resample:1: WARNING: more than one target found for cross-reference 'AffineTransformation3d': soma.aims.AffineTransformation3d, soma.aims.aims.AffineTransformation3d
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/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,054::ERROR::Traceback (most recent call last):
File "/casa/host/src/capsul/5.1/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 11, in <module>
from pcl import registration as reg
ImportError: cannot import name 'registration' from 'pcl' (/usr/lib/python3/dist-packages/pcl/__init__.py)
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,054::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,055::ERROR::Traceback (most recent call last):
File "/casa/host/src/capsul/5.1/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 11, in <module>
from pcl import registration as reg
ImportError: cannot import name 'registration' from 'pcl' (/usr/lib/python3/dist-packages/pcl/__init__.py)
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,055::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,055::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,055::INFO::Found '4' process(es) in 'deepsulci.pattern_classification.capsul'.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,055::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,056::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'...
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/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,057::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,058::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/5.1/sphinx/process_docs/deepsulci/pattern_classification/process/index.rst'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,058::INFO::process: '4' files written for module 'pattern_classification' at location /casa/host/src/morphologist/morpho-deepsulci/5.1/sphinx/process_docs/deepsulci/pattern_classification/process.
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,058::INFO::Writing module 'pattern_classification' index at location '/casa/host/src/morphologist/morpho-deepsulci/5.1/sphinx/process_docs/deepsulci/pattern_classification/index.rst'...
/casa/host/src/capsul/5.1/capsul/sphinxext/capsul_pipeline_rst.py::2025-11-25 03:56:52,058::INFO::Index: an index has been written for module 'pattern_classification' at location /casa/host/src/morphologist/morpho-deepsulci/5.1/sphinx/process_docs/deepsulci/pattern_classification.
reading sources... [ 63%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.pialmesh.PialMesh
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/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst
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/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/5.1/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
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WARNING: html_static_path entry '_static' does not exist
generating CAPSUL processes docs...
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.sulci_labeling.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/5.1/sphinx/process_docs/deepsulci', '--schema']
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.pattern_classification.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/5.1/sphinx/process_docs/deepsulci', '--schema']
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done
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.1/sphinx/objects.inv...
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[autosummary] generating autosummary for: api.rst, index.rst, process_docs/deepsulci/pattern_classification/index.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst, process_docs/deepsulci/pattern_classification/process/index.rst, process_docs/deepsulci/sulci_labeling/index.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst, process_docs/deepsulci/sulci_labeling/process/index.rst
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build succeeded, 8 warnings.
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Failed to import deepsulci.pattern_classification.method.svm.
Possible hints:
* AttributeError: module 'deepsulci.pattern_classification.method' has no attribute 'svm'
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Finished: SUCCESS
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