Started
Running as <a href='/builds/user/brainvisa' class='jenkins-table__link model-link model-link--float'>brainvisa</a>
----------------------------------------
$ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi-nightly/brainvisa-master-5.3/src/development/casa-distro/master/bin/casa_distro bv_maker name=cea-qt6-5.4 -- doc
----------------------------------------
Building docs in directory: /casa/host/build
$ make -j32 doc
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Running Sphinx v7.2.6
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/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/conf.py:166: SyntaxWarning: invalid escape sequence '\.'
  '/(%s)\.py' % ')|('.join(gallery_examples),
warning: Tag 'SYMBOL_CACHE_SIZE' at line 295 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'SHOW_DIRECTORIES' at line 479 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'COLS_IN_ALPHA_INDEX' at line 750 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'HTML_ALIGN_MEMBERS' at line 805 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'XML_SCHEMA' at line 1142 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'XML_DTD' at line 1148 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'PERL_PATH' at line 1313 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'CLASS_DIAGRAMS' at line 1326 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 1335 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTNAME' at line 1359 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTSIZE' at line 1364 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_TRANSPARENT' at line 1488 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
Using the default: a4!
warning: doxygen no longer ships with the FreeSans font.
  You may want to clear or change DOT_FONTNAME.
  Otherwise you run the risk that the wrong font is being used for dot generated graphs.
warning: source '/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/example' is not a readable file or directory... skipping.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:500: warning: include file stdint.h not found, perhaps you forgot to add its directory to INCLUDE_PATH?
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:501: warning: missing title after \defgroup NIFTI1_DATATYPES
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:541: warning: missing title after \defgroup NIFTI1_DATATYPE_ALIASES
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:703: warning: missing title after \defgroup NIFTI1_INTENT_CODES
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1189: warning: missing title after \defgroup NIFTI1_XFORM_CODES
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1253: warning: missing title after \defgroup NIFTI1_UNITS
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1394: warning: missing title after \defgroup NIFTI1_SLICE_ORDER
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:36: warning: include file stdint.h not found, perhaps you forgot to add its directory to INCLUDE_PATH?
WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English).
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:40: warning: Compound cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:65: warning: Compound cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:43: warning: Compound cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:67: warning: Compound cifti::CiftiBrainModelsMap::IndexInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:61: warning: Compound cifti::CiftiBrainModelsMap::ModelInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:51: warning: Compound cifti::CiftiBrainModelsMap::SurfaceMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:56: warning: Compound cifti::CiftiBrainModelsMap::VolumeMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:102: warning: Compound cifti::CiftiFile::ReadImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:111: warning: Compound cifti::CiftiFile::WriteImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:42: warning: Compound cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:38: warning: Compound cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:44: warning: Compound cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:47: warning: Compound cifti::CiftiParcelsMap::Parcel is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:40: warning: Compound cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:35: warning: Compound cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:37: warning: Compound cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Compact3DLookup.h:37: warning: Compound cifti::Compact3DLookup is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:39: warning: Compound cifti::CompactLookup is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:76: warning: Compound cifti::CompactLookup::const_iterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:48: warning: Compound cifti::CompactLookup::iterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:37: warning: Compound cifti::ConstFloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:48: warning: Compound cifti::FloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:39: warning: Compound cifti::Label is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:44: warning: Compound cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MatrixFunctions.h:42: warning: Compound cifti::MatrixFunctions is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:44: warning: Compound cifti::MetaData is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:40: warning: Compound cifti::MultiDimArray is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:38: warning: Compound cifti::MultiDimIterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:42: warning: Compound cifti::NiftiExtension is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:48: warning: Compound cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:49: warning: Compound cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:97: warning: Compound cifti::StrFileImpl is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:36: warning: Compound cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:41: warning: Compound cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:35: warning: Compound cifti::VoxelIJK is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:147: warning: Compound cifti::XmlAttributesResult is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:149: warning: Compound cifti::XmlAttributesResult::OptionalStatus is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.cxx:51: warning: no matching class member found for 
  void CiftiBrainModelsMap::addSurfaceModel(const int64_t &amp;numberOfNodes, const cifti::StructureEnum::Enum &amp;structure, const vector&lt; int64_t &gt; &amp;nodeList)
Possible candidates:
  'void cifti::CiftiBrainModelsMap::addSurfaceModel(const int64_t &amp;numberOfNodes, const StructureEnum::Enum &amp;structure, const float *roi=NULL)' at line 93 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h
  'void cifti::CiftiBrainModelsMap::addSurfaceModel(const int64_t &amp;numberOfNodes, const StructureEnum::Enum &amp;structure, const std::vector&lt; int64_t &gt; &amp;nodeList)' at line 94 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.cxx:236: warning: no matching class member found for 
  void CiftiXML::readXML(const vector&lt; char &gt; &amp;text)
Possible candidates:
  'void cifti::CiftiXML::readXML(XmlReader &amp;xml)' at line 86 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h
  'void cifti::CiftiXML::readXML(const std::vector&lt; char &gt; &amp;text)' at line 87 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.cxx:60: warning: no matching class member found for 
  VolumeSpace::VolumeSpace(int64_t[3] dims[3], const vector&lt; vector&lt; float &gt; &gt; &amp;sform)
Possible candidates:
  'cifti::VolumeSpace::VolumeSpace()' at line 56 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h
  'cifti::VolumeSpace::VolumeSpace(const int64_t dims[3], const std::vector&lt; std::vector&lt; float &gt; &gt; &amp;sform)' at line 57 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h
  'cifti::VolumeSpace::VolumeSpace(const int64_t dims[3], const float sform[12])' at line 58 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.cxx:70: warning: no matching class member found for 
  void VolumeSpace::setSpace(int64_t[3] dims[3], const vector&lt; vector&lt; float &gt; &gt; &amp;sform)
Possible candidates:
  'void cifti::VolumeSpace::setSpace(const int64_t dims[3], const std::vector&lt; std::vector&lt; float &gt; &gt; &amp;sform)' at line 59 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h
  'void cifti::VolumeSpace::setSpace(const int64_t dims[3], const float sform[12])' at line 60 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:217: warning: no matching class member found for 
  void CiftiFile::getRow(float *dataOut, const vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead) const
Possible candidates:
  'void cifti::CiftiFile::getRow(float *dataOut, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead=false) const' at line 77 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'void cifti::CiftiFile::getRow(float *dataOut, const int64_t &amp;index, const bool &amp;tolerateShortRead=false) const' at line 96 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::ReadImplInterface::getRow(float *dataOut, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead) const =0' at line 105 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:252: warning: no matching class member found for 
  void CiftiFile::setRow(const float *dataIn, const vector&lt; int64_t &gt; &amp;indexSelect)
Possible candidates:
  'void cifti::CiftiFile::setRow(const float *dataIn, const std::vector&lt; int64_t &gt; &amp;indexSelect)' at line 90 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'void cifti::CiftiFile::setRow(const float *dataIn, const int64_t &amp;index)' at line 99 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::WriteImplInterface::setRow(const float *dataIn, const std::vector&lt; int64_t &gt; &amp;indexSelect)=0' at line 114 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:330: warning: documented symbol 'CiftiMemoryImpl::CiftiMemoryImpl' was not declared or defined.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:336: warning: no uniquely matching class member found for 
  void CiftiMemoryImpl::getRow(float *dataOut, const vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;) const
Possible candidates:
  'void cifti::CiftiFile::getRow(float *dataOut, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead=false) const' at line 77 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'void cifti::CiftiFile::getRow(float *dataOut, const int64_t &amp;index, const bool &amp;tolerateShortRead=false) const' at line 96 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::ReadImplInterface::getRow(float *dataOut, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead) const =0' at line 105 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:346: warning: no uniquely matching class member found for 
  void CiftiMemoryImpl::getColumn(float *dataOut, const int64_t &amp;index) const
Possible candidates:
  'void cifti::CiftiFile::getColumn(float *dataOut, const int64_t &amp;index) const' at line 87 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::ReadImplInterface::getColumn(float *dataOut, const int64_t &amp;index) const =0' at line 106 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:359: warning: no uniquely matching class member found for 
  void CiftiMemoryImpl::setRow(const float *dataIn, const vector&lt; int64_t &gt; &amp;indexSelect)
Possible candidates:
  'void cifti::CiftiFile::setRow(const float *dataIn, const std::vector&lt; int64_t &gt; &amp;indexSelect)' at line 90 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'void cifti::CiftiFile::setRow(const float *dataIn, const int64_t &amp;index)' at line 99 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::WriteImplInterface::setRow(const float *dataIn, const std::vector&lt; int64_t &gt; &amp;indexSelect)=0' at line 114 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:369: warning: no uniquely matching class member found for 
  void CiftiMemoryImpl::setColumn(const float *dataIn, const int64_t &amp;index)
Possible candidates:
  'void cifti::CiftiFile::setColumn(const float *dataIn, const int64_t &amp;index)' at line 93 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::WriteImplInterface::setColumn(const float *dataIn, const int64_t &amp;index)=0' at line 115 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:382: warning: documented symbol 'CiftiOnDiskImpl::CiftiOnDiskImpl' was not declared or defined.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:427: warning: documented symbol 'CiftiOnDiskImpl::CiftiOnDiskImpl' was not declared or defined.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:458: warning: no uniquely matching class member found for 
  void CiftiOnDiskImpl::getRow(float *dataOut, const vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead) const
Possible candidates:
  'void cifti::CiftiFile::getRow(float *dataOut, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead=false) const' at line 77 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'void cifti::CiftiFile::getRow(float *dataOut, const int64_t &amp;index, const bool &amp;tolerateShortRead=false) const' at line 96 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::ReadImplInterface::getRow(float *dataOut, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead) const =0' at line 105 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:463: warning: no uniquely matching class member found for 
  void CiftiOnDiskImpl::getColumn(float *dataOut, const int64_t &amp;index) const
Possible candidates:
  'void cifti::CiftiFile::getColumn(float *dataOut, const int64_t &amp;index) const' at line 87 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::ReadImplInterface::getColumn(float *dataOut, const int64_t &amp;index) const =0' at line 106 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:477: warning: no uniquely matching class member found for 
  void CiftiOnDiskImpl::setRow(const float *dataIn, const vector&lt; int64_t &gt; &amp;indexSelect)
Possible candidates:
  'void cifti::CiftiFile::setRow(const float *dataIn, const std::vector&lt; int64_t &gt; &amp;indexSelect)' at line 90 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'void cifti::CiftiFile::setRow(const float *dataIn, const int64_t &amp;index)' at line 99 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::WriteImplInterface::setRow(const float *dataIn, const std::vector&lt; int64_t &gt; &amp;indexSelect)=0' at line 114 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:482: warning: no uniquely matching class member found for 
  void CiftiOnDiskImpl::setColumn(const float *dataIn, const int64_t &amp;index)
Possible candidates:
  'void cifti::CiftiFile::setColumn(const float *dataIn, const int64_t &amp;index)' at line 93 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
  'virtual void cifti::CiftiFile::WriteImplInterface::setColumn(const float *dataIn, const int64_t &amp;index)=0' at line 115 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:51: warning: no matching class member found for 
  FloatMatrix::FloatMatrix(const vector&lt; vector&lt; float &gt; &gt; &amp;matrixIn)
Possible candidates:
  'cifti::FloatMatrix::FloatMatrix()' at line 68 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
  'cifti::FloatMatrix::FloatMatrix(const std::vector&lt; std::vector&lt; float &gt; &gt; &amp;matrixIn)' at line 70 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
  'cifti::FloatMatrix::FloatMatrix(const int64_t &amp;rows, const int64_t &amp;cols)' at line 72 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:281: warning: no matching class member found for 
  FloatMatrixRowRef::FloatMatrixRowRef(vector&lt; float &gt; &amp;therow)
Possible candidates:
  'friend class cifti::ConstFloatMatrixRowRef::FloatMatrixRowRef' at line 45 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
  'cifti::FloatMatrixRowRef::FloatMatrixRowRef()' at line 51 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
  'cifti::FloatMatrixRowRef::FloatMatrixRowRef(FloatMatrixRowRef &amp;right)' at line 53 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
  'cifti::FloatMatrixRowRef::FloatMatrixRowRef(std::vector&lt; float &gt; &amp;therow)' at line 54 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:336: warning: no matching class member found for 
  ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const vector&lt; float &gt; &amp;therow)
Possible candidates:
  'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef()' at line 40 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
  'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const ConstFloatMatrixRowRef &amp;right)' at line 42 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
  'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const std::vector&lt; float &gt; &amp;therow)' at line 43 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.cxx:35: warning: no matching file member found for 
XmlAttributesResult cifti::XmlReader_parseAttributes(XmlReader &amp;xml, const vector&lt; AString &gt; &amp;mandatoryNames, const vector&lt; AString &gt; &amp;optionalNames)
Possible candidates:
 'XmlAttributesResult XmlReader_parseAttributes(XmlReader &amp;xml, const std::vector&lt; AString &gt; &amp;mandatoryNames, const std::vector&lt; AString &gt; &amp;optionalNames=std::vector&lt; AString &gt;())' at line 162 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h
[ 52%] Built target aimsdata
[ 52%] Built target DiscoFFDMetrics
[ 52%] Built target AimsAverage
[ 52%] Built target AimsFiberOversampler
[ 52%] Built target AimsFileInfo
[ 52%] Built target AimsComposeTransformation
[ 52%] Built target AimsConnectComp
[ 52%] Built target AimsFileConvert
[ 52%] Built target AimsChannelExtract
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:506: warning: Member DT_NONE (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:507: warning: Member DT_UNKNOWN (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:508: warning: Member DT_BINARY (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:509: warning: Member DT_UNSIGNED_CHAR (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:510: warning: Member DT_SIGNED_SHORT (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:511: warning: Member DT_SIGNED_INT (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:512: warning: Member DT_FLOAT (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:513: warning: Member DT_COMPLEX (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:514: warning: Member DT_DOUBLE (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:515: warning: Member DT_RGB (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:516: warning: Member DT_ALL (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:519: warning: Member DT_UINT8 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:520: warning: Member DT_INT16 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:521: warning: Member DT_INT32 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:522: warning: Member DT_FLOAT32 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:523: warning: Member DT_COMPLEX64 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:524: warning: Member DT_FLOAT64 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:525: warning: Member DT_RGB24 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:528: warning: Member DT_INT8 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:529: warning: Member DT_UINT16 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:530: warning: Member DT_UINT32 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:531: warning: Member DT_INT64 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:532: warning: Member DT_UINT64 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:533: warning: Member DT_FLOAT128 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:534: warning: Member DT_COMPLEX128 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:535: warning: Member DT_COMPLEX256 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:707: warning: Member NIFTI_INTENT_CORREL (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:895: warning: Member NIFTI_INTENT_VECTOR (variable) of namespace cifti is not documented.
loading pickled environment... /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1288: warning: Member XYZT_TO_SPACE(xyzt) (macro definition) of group NIFTI1_UNITS is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1289: warning: Member XYZT_TO_TIME(xyzt) (macro definition) of group NIFTI1_UNITS is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1292: warning: Member SPACE_TIME_TO_XYZT(ss, tt) (macro definition) of group NIFTI1_UNITS is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1385: warning: Member DIM_INFO_TO_FREQ_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1386: warning: Member DIM_INFO_TO_PHASE_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1387: warning: Member DIM_INFO_TO_SLICE_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1390: warning: Member FPS_INTO_DIM_INFO(fd, pd, sd) (macro definition) of group NIFTI1_UNITS is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:306: warning: Member extension[4] (variable) of struct cifti::nifti1_extender is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1399: warning: Member NIFTI_SLICE_UNKNOWN (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1400: warning: Member NIFTI_SLICE_SEQ_INC (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1401: warning: Member NIFTI_SLICE_SEQ_DEC (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1402: warning: Member NIFTI_SLICE_ALT_INC (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1403: warning: Member NIFTI_SLICE_ALT_DEC (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1404: warning: Member NIFTI_SLICE_ALT_INC2 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1405: warning: Member NIFTI_SLICE_ALT_DEC2 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:225: warning: Member nifti_1_header (typedef) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:307: warning: Member nifti1_extender (typedef) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:317: warning: Member nifti1_extension (typedef) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:117: warning: Member nifti_2_header (typedef) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:116: warning: Member AString_split(const AString &amp;input, const char &amp;delim) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:117: warning: Member AString_split_whitespace(const AString &amp;input) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:118: warning: Member AString_toInt(const AString &amp;input, bool &amp;ok) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:119: warning: Member AString_toFloat(const AString &amp;input, bool &amp;ok) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:69: warning: Member operator*(const float &amp;left, const Vector3D &amp;right) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:159: warning: Member XmlReader_readElementText(XmlReader &amp;xml) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:160: warning: Member XmlReader_readNextStartElement(XmlReader &amp;xml) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:161: warning: Member XmlReader_elementName(XmlReader &amp;xml) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:162: warning: Member XmlReader_parseAttributes(XmlReader &amp;xml, const std::vector&lt; AString &gt; &amp;mandatoryNames, const std::vector&lt; AString &gt; &amp;optionalNames=std::vector&lt; AString &gt;()) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:163: warning: Member XmlReader_checkEndElement(XmlReader &amp;xml, const AString &amp;elementName) (function) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:506: warning: Member DT_NONE (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:507: warning: Member DT_UNKNOWN (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:508: warning: Member DT_BINARY (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:509: warning: Member DT_UNSIGNED_CHAR (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:510: warning: Member DT_SIGNED_SHORT (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:511: warning: Member DT_SIGNED_INT (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:512: warning: Member DT_FLOAT (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:513: warning: Member DT_COMPLEX (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:514: warning: Member DT_DOUBLE (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:515: warning: Member DT_RGB (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:516: warning: Member DT_ALL (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:519: warning: Member DT_UINT8 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:520: warning: Member DT_INT16 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:521: warning: Member DT_INT32 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:522: warning: Member DT_FLOAT32 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:523: warning: Member DT_COMPLEX64 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:524: warning: Member DT_FLOAT64 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:525: warning: Member DT_RGB24 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:528: warning: Member DT_INT8 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:529: warning: Member DT_UINT16 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:530: warning: Member DT_UINT32 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:531: warning: Member DT_INT64 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:532: warning: Member DT_UINT64 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:533: warning: Member DT_FLOAT128 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:534: warning: Member DT_COMPLEX128 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:535: warning: Member DT_COMPLEX256 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:707: warning: Member NIFTI_INTENT_CORREL (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:895: warning: Member NIFTI_INTENT_VECTOR (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1399: warning: Member NIFTI_SLICE_UNKNOWN (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1400: warning: Member NIFTI_SLICE_SEQ_INC (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1401: warning: Member NIFTI_SLICE_SEQ_DEC (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1402: warning: Member NIFTI_SLICE_ALT_INC (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1403: warning: Member NIFTI_SLICE_ALT_DEC (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1404: warning: Member NIFTI_SLICE_ALT_INC2 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1405: warning: Member NIFTI_SLICE_ALT_DEC2 (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:38: warning: Member NIFTI_INTENT_CONNECTIVITY_UNKNOWN (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:39: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:40: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_TIME (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:41: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_SERIES (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:42: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:43: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_TIME (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:44: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_SERIES (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:45: warning: Member NIFTI_INTENT_CONNECTIVITY_CONNECTIVITY_TRAJECTORY (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:46: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_TRAJECTORY (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:47: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_SCALARS (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:48: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_LABELS (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:49: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_SCALAR (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:50: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_DENSE (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:51: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_PARCELLATED (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:52: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_PARCELLATED_SERIES (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:53: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_PARCELLATED_SCALAR (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:55: warning: Member NIFTI_ECODE_CIFTI (variable) of namespace cifti is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:43: warning: Member OpenMode (enumeration) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:56: warning: Member open(const AString &amp;filename, const OpenMode &amp;opmode=READ) (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:57: warning: Member close() (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:58: warning: Member getFilename() const (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:59: warning: Member getOpenForRead() (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:60: warning: Member getOpenForWrite() (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:61: warning: Member seek(const int64_t &amp;position) (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:62: warning: Member pos() (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:63: warning: Member read(void *dataOut, const int64_t &amp;count, int64_t *numRead=NULL) (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:64: warning: Member write(const void *dataIn, const int64_t &amp;count) (function) of class cifti::BinaryFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:70: warning: Member open(const AString &amp;filename, const OpenMode &amp;opmode)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:71: warning: Member close()=0 (function) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:72: warning: Member getFilename() const (function) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:73: warning: Member seek(const int64_t &amp;position)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:74: warning: Member pos()=0 (function) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:75: warning: Member read(void *dataOut, const int64_t &amp;count, int64_t *numRead)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:76: warning: Member write(const void *dataIn, const int64_t &amp;count)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:68: warning: Member m_fileName (variable) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:43: warning: Member swap(T &amp;toSwap) (function) of class cifti::ByteSwapping is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:46: warning: Member swapArray(T *toSwap, const uint64_t &amp;count) (function) of class cifti::ByteSwapping is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:48: warning: Member isBigEndian() (function) of class cifti::ByteSwapping is not documented.
loading pickled environment... /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:46: warning: Member ModelType (enumeration) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:74: warning: Member hasVolumeData() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:75: warning: Member hasVolumeData(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:76: warning: Member hasSurfaceData(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:77: warning: Member getIndexForNode(const int64_t &amp;node, const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:78: warning: Member getIndexForVoxel(const int64_t *ijk, StructureEnum::Enum *structureOut=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:79: warning: Member getIndexForVoxel(const int64_t &amp;i, const int64_t &amp;j, const int64_t &amp;k, StructureEnum::Enum *structureOut=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:80: warning: Member getInfoForIndex(const int64_t index) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:81: warning: Member getSurfaceMap(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:82: warning: Member getFullVolumeMap() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:83: warning: Member getVolumeStructureMap(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:84: warning: Member getVolumeSpace() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:85: warning: Member getSurfaceNumberOfNodes(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:86: warning: Member getSurfaceStructureList() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:87: warning: Member getVolumeStructureList() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:88: warning: Member getNodeList(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:89: warning: Member getVoxelList(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:90: warning: Member getModelInfo() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:93: warning: Member addSurfaceModel(const int64_t &amp;numberOfNodes, const StructureEnum::Enum &amp;structure, const float *roi=NULL) (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:94: warning: Member addSurfaceModel(const int64_t &amp;numberOfNodes, const StructureEnum::Enum &amp;structure, const std::vector&lt; int64_t &gt; &amp;nodeList) (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:95: warning: Member addVolumeModel(const StructureEnum::Enum &amp;structure, const std::vector&lt; int64_t &gt; &amp;ijkList) (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:96: warning: Member setVolumeSpace(const VolumeSpace &amp;space) (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:97: warning: Member clear() (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:99: warning: Member clone() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:100: warning: Member getType() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:101: warning: Member getLength() const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:102: warning: Member operator==(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:103: warning: Member approximateMatch(const CiftiMappingType &amp;rhs, AString *explanation=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:104: warning: Member readXML1(XmlReader &amp;xml) (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:105: warning: Member readXML2(XmlReader &amp;xml) (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:106: warning: Member writeXML1(XmlWriter &amp;xml) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:107: warning: Member writeXML2(XmlWriter &amp;xml) const (function) of class cifti::CiftiBrainModelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &amp;type) (function) of class cifti::CiftiMappingType is not documented.
loading pickled environment... /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:69: warning: Member m_type (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:70: warning: Member m_structure (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:71: warning: Member m_surfaceNode (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:72: warning: Member m_ijk[3] (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:63: warning: Member m_type (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:64: warning: Member m_structure (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:65: warning: Member m_indexStart (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:65: warning: Member m_indexCount (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:53: warning: Member m_ciftiIndex (variable) of struct cifti::CiftiBrainModelsMap::SurfaceMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:54: warning: Member m_surfaceNode (variable) of struct cifti::CiftiBrainModelsMap::SurfaceMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:58: warning: Member m_ciftiIndex (variable) of struct cifti::CiftiBrainModelsMap::VolumeMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:59: warning: Member m_ijk[3] (variable) of struct cifti::CiftiBrainModelsMap::VolumeMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:48: warning: Member ENDIAN (enumeration) of class cifti::CiftiFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:73: warning: Member getCiftiXML() const (function) of class cifti::CiftiFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:74: warning: Member isInMemory() const (function) of class cifti::CiftiFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:78: warning: Member getDimensions() const (function) of class cifti::CiftiFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:89: warning: Member setCiftiXML(const CiftiXML &amp;xml, const bool useOldMetadata=true) (function) of class cifti::CiftiFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:90: warning: Member setRow(const float *dataIn, const std::vector&lt; int64_t &gt; &amp;indexSelect) (function) of class cifti::CiftiFile is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:105: warning: Member getRow(float *dataOut, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:106: warning: Member getColumn(float *dataOut, const int64_t &amp;index) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:107: warning: Member isInMemory() const (function) of class cifti::CiftiFile::ReadImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:114: warning: Member setRow(const float *dataIn, const std::vector&lt; int64_t &gt; &amp;indexSelect)=0 (function) of class cifti::CiftiFile::WriteImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:115: warning: Member setColumn(const float *dataIn, const int64_t &amp;index)=0 (function) of class cifti::CiftiFile::WriteImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:105: warning: Member getRow(float *dataOut, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:106: warning: Member getColumn(float *dataOut, const int64_t &amp;index) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:107: warning: Member isInMemory() const (function) of class cifti::CiftiFile::ReadImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:45: warning: Member getMapMetadata(const int64_t &amp;index) const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:46: warning: Member getMapLabelTable(const int64_t &amp;index) const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:47: warning: Member getMapName(const int64_t &amp;index) const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:49: warning: Member setMapMetadata(const int64_t &amp;index, const MetaData &amp;md) (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:50: warning: Member setMapLabelTable(const int64_t &amp;index, const LabelTable &amp;lt) (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:51: warning: Member setMapName(const int64_t &amp;index, const AString &amp;mapName) (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:52: warning: Member setLength(const int64_t &amp;length) (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:53: warning: Member clear() (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:55: warning: Member clone() const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:56: warning: Member getType() const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:57: warning: Member getLength() const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:58: warning: Member operator==(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:59: warning: Member approximateMatch(const CiftiMappingType &amp;rhs, AString *explanation=NULL) const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:60: warning: Member readXML1(XmlReader &amp;xml) (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:61: warning: Member readXML2(XmlReader &amp;xml) (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:62: warning: Member writeXML1(XmlWriter &amp;xml) const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:63: warning: Member writeXML2(XmlWriter &amp;xml) const (function) of class cifti::CiftiLabelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &amp;type) (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:49: warning: Member clone() const =0 (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:50: warning: Member getType() const =0 (function) of class cifti::CiftiMappingType is not documented.
done
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:51: warning: Member getLength() const =0 (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:52: warning: Member operator==(const CiftiMappingType &amp;rhs) const =0 (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:54: warning: Member approximateMatch(const CiftiMappingType &amp;rhs, AString *explanation=NULL) const =0 (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:55: warning: Member readXML1(XmlReader &amp;xml)=0 (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:56: warning: Member readXML2(XmlReader &amp;xml)=0 (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:57: warning: Member writeXML1(XmlWriter &amp;xml) const =0 (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:58: warning: Member writeXML2(XmlWriter &amp;xml) const =0 (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &amp;type) (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:56: warning: Member hasVolumeData() const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:57: warning: Member hasSurface(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:58: warning: Member hasSurfaceData(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:59: warning: Member getVolumeSpace() const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:60: warning: Member getSurfaceNumberOfNodes(const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:61: warning: Member getIndexForNode(const int64_t &amp;node, const StructureEnum::Enum &amp;structure) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:62: warning: Member getIndexForVoxel(const int64_t *ijk) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:63: warning: Member getIndexForVoxel(const int64_t &amp;i, const int64_t &amp;j, const int64_t &amp;k) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:64: warning: Member getParcelSurfaceStructures() const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:65: warning: Member getParcels() const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:68: warning: Member addSurface(const int64_t &amp;numberOfNodes, const StructureEnum::Enum &amp;structure) (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:69: warning: Member setVolumeSpace(const VolumeSpace &amp;space) (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:70: warning: Member addParcel(const Parcel &amp;parcel) (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:71: warning: Member clear() (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:73: warning: Member clone() const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:74: warning: Member getType() const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:75: warning: Member getLength() const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:76: warning: Member operator==(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:77: warning: Member approximateMatch(const CiftiMappingType &amp;rhs, AString *explanation=NULL) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:78: warning: Member readXML1(XmlReader &amp;xml) (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:79: warning: Member readXML2(XmlReader &amp;xml) (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:80: warning: Member writeXML1(XmlWriter &amp;xml) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:81: warning: Member writeXML2(XmlWriter &amp;xml) const (function) of class cifti::CiftiParcelsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &amp;type) (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:52: warning: Member operator==(const Parcel &amp;rhs) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:53: warning: Member operator!=(const Parcel &amp;rhs) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:54: warning: Member approximateMatch(const Parcel &amp;rhs, AString *explanation=NULL) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:49: warning: Member m_surfaceNodes (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:50: warning: Member m_voxelIndices (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:51: warning: Member m_name (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:44: warning: Member CiftiScalarsMap(const CiftiScalarsMap &amp;rhs) (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:45: warning: Member operator=(const CiftiScalarsMap &amp;rhs) (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:46: warning: Member CiftiScalarsMap(const int64_t &amp;length) (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:48: warning: Member getMapMetadata(const int64_t &amp;index) const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:49: warning: Member getMapName(const int64_t &amp;index) const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:51: warning: Member setMapMetadata(const int64_t &amp;index, const MetaData &amp;mdIn) (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:52: warning: Member setMapName(const int64_t &amp;index, const AString &amp;mapName) (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:53: warning: Member setLength(const int64_t &amp;length) (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:54: warning: Member clear() (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:56: warning: Member clone() const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:57: warning: Member getType() const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:58: warning: Member getLength() const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:59: warning: Member operator==(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:60: warning: Member approximateMatch(const CiftiMappingType &amp;rhs, AString *explanation=NULL) const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:61: warning: Member readXML1(XmlReader &amp;xml) (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:62: warning: Member readXML2(XmlReader &amp;xml) (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:63: warning: Member writeXML1(XmlWriter &amp;xml) const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:64: warning: Member writeXML2(XmlWriter &amp;xml) const (function) of class cifti::CiftiScalarsMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &amp;type) (function) of class cifti::CiftiMappingType is not documented.
[ 52%] Built target AimsGraphComplete
[ 52%] Built target AimsGraphExtractTransformation
[ 52%] Built target AimsGraphMerge
[ 52%] Built target AimsFlip
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:38: warning: Member Unit (enumeration) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:45: warning: Member getStart() const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:46: warning: Member getStep() const (function) of class cifti::CiftiSeriesMap is not documented.
[ 52%] Built target AimsInvertTransformation
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:47: warning: Member getUnit() const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:56: warning: Member CiftiSeriesMap(const int64_t &amp;length, const float &amp;start=0.0f, const float &amp;step=1.0f, const Unit &amp;unit=SECOND) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:63: warning: Member setStart(const float &amp;start) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:64: warning: Member setStep(const float &amp;step) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:65: warning: Member setUnit(const Unit &amp;unit) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:66: warning: Member setLength(const int64_t &amp;length) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:72: warning: Member clone() const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:73: warning: Member getType() const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:74: warning: Member getLength() const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:75: warning: Member operator==(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:84: warning: Member approximateMatch(const CiftiMappingType &amp;rhs, AString *explanation=NULL) const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:101: warning: Member readXML1(XmlReader &amp;xml) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:102: warning: Member readXML2(XmlReader &amp;xml) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:103: warning: Member writeXML1(XmlWriter &amp;xml) const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:104: warning: Member writeXML2(XmlWriter &amp;xml) const (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &amp;rhs) const (function) of class cifti::CiftiMappingType is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:68: warning: Member stringToUnit(const AString &amp;string, bool &amp;ok) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:69: warning: Member unitToString(const Unit &amp;theUnit) (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:70: warning: Member getAllUnits() (function) of class cifti::CiftiSeriesMap is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &amp;type) (function) of class cifti::CiftiMappingType is not documented.
[ 52%] Built target AimsGraphConvert
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:41: warning: Member getMajor() const (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:42: warning: Member getMinor() const (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:45: warning: Member CiftiVersion(const int16_t &amp;major, const int16_t &amp;minor) (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:46: warning: Member CiftiVersion(const AString &amp;versionString) (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:47: warning: Member toString() const (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:48: warning: Member operator&lt;(const CiftiVersion &amp;rhs) const (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:49: warning: Member operator&gt;(const CiftiVersion &amp;rhs) const (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:50: warning: Member operator==(const CiftiVersion &amp;rhs) const (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:51: warning: Member operator!=(const CiftiVersion &amp;rhs) const (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:52: warning: Member operator&lt;=(const CiftiVersion &amp;rhs) const (function) of class cifti::CiftiVersion is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:53: warning: Member operator&gt;=(const CiftiVersion &amp;rhs) const (function) of class cifti::CiftiVersion is not documented.
[ 52%] Built target AimsMassCenter
[ 52%] Built target AimsMerge2Rgb
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:57: warning: Member getNumberOfDimensions() const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:58: warning: Member getParsedVersion() const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:65: warning: Member getFileMetaData() const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:67: warning: Member getMappingType(const int &amp;direction) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:68: warning: Member getBrainModelsMap(const int &amp;direction) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:69: warning: Member getBrainModelsMap(const int &amp;direction) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:70: warning: Member getLabelsMap(const int &amp;direction) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:71: warning: Member getLabelsMap(const int &amp;direction) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:72: warning: Member getParcelsMap(const int &amp;direction) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:73: warning: Member getParcelsMap(const int &amp;direction) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:74: warning: Member getScalarsMap(const int &amp;direction) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:75: warning: Member getScalarsMap(const int &amp;direction) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:76: warning: Member getSeriesMap(const int &amp;direction) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:77: warning: Member getSeriesMap(const int &amp;direction) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:78: warning: Member getDimensionLength(const int &amp;direction) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:79: warning: Member getDimensions() const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:81: warning: Member setNumberOfDimensions(const int &amp;num) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:82: warning: Member setMap(const int &amp;direction, const CiftiMappingType &amp;mapIn) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:83: warning: Member setFileMetaData(const MetaData &amp;mdIn) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:84: warning: Member clear() (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:86: warning: Member readXML(XmlReader &amp;xml) (function) of class cifti::CiftiXML is not documented.
building [mo]: targets for 0 po files that are out of date
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:87: warning: Member readXML(const std::vector&lt; char &gt; &amp;text) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:89: warning: Member writeXMLToVector(const CiftiVersion &amp;writingVersion=CiftiVersion()) const (function) of class cifti::CiftiXML is not documented.
writing output... /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:90: warning: Member writeXML(XmlWriter &amp;xml, const CiftiVersion &amp;writingVersion=CiftiVersion()) const (function) of class cifti::CiftiXML is not documented.

/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:96: warning: Member CiftiXML(const CiftiXML &amp;rhs) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:97: warning: Member operator=(const CiftiXML &amp;rhs) (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:98: warning: Member operator==(const CiftiXML &amp;rhs) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:99: warning: Member operator!=(const CiftiXML &amp;rhs) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:100: warning: Member approximateMatch(const CiftiXML &amp;rhs) const (function) of class cifti::CiftiXML is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:110: warning: Member end() (function) of class cifti::CompactLookup is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:111: warning: Member end() const (function) of class cifti::CompactLookup is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:83: warning: Member operator==(const const_iterator &amp;rhs) const (function) of class cifti::CompactLookup::const_iterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:90: warning: Member operator*() (function) of class cifti::CompactLookup::const_iterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:96: warning: Member operator-&gt;() (function) of class cifti::CompactLookup::const_iterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:55: warning: Member operator==(const iterator &amp;rhs) const (function) of class cifti::CompactLookup::iterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:62: warning: Member operator*() (function) of class cifti::CompactLookup::iterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:68: warning: Member operator-&gt;() (function) of class cifti::CompactLookup::iterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:42: warning: Member ConstFloatMatrixRowRef(const ConstFloatMatrixRowRef &amp;right) (function) of class cifti::ConstFloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:43: warning: Member ConstFloatMatrixRowRef(const std::vector&lt; float &gt; &amp;therow) (function) of class cifti::ConstFloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:44: warning: Member operator[](const int64_t &amp;index) (function) of class cifti::ConstFloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:73: warning: Member operator[](const int64_t &amp;index) (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:74: warning: Member operator[](const int64_t &amp;index) const (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:75: warning: Member operator+=(const FloatMatrix &amp;right) (function) of class cifti::FloatMatrix is not documented.
building [html]: targets for 0 source files that are out of date
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:76: warning: Member operator-=(const FloatMatrix &amp;right) (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:77: warning: Member operator*=(const FloatMatrix &amp;right) (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:78: warning: Member operator+=(const float &amp;right) (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:79: warning: Member operator-=(const float &amp;right) (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:80: warning: Member operator*=(const float &amp;right) (function) of class cifti::FloatMatrix is not documented.
updating environment: /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:81: warning: Member operator/=(const float &amp;right) (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:82: warning: Member operator+(const FloatMatrix &amp;right) const (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:83: warning: Member operator-(const FloatMatrix &amp;right) const (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:84: warning: Member operator-() const (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:85: warning: Member operator*(const FloatMatrix &amp;right) const (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:86: warning: Member operator==(const FloatMatrix &amp;right) const (function) of class cifti::FloatMatrix is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:87: warning: Member operator!=(const FloatMatrix &amp;right) const (function) of class cifti::FloatMatrix is not documented.
0 added, 1 changed, 0 removed
reading sources... [100%] populse_db
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:53: warning: Member FloatMatrixRowRef(FloatMatrixRowRef &amp;right) (function) of class cifti::FloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:54: warning: Member FloatMatrixRowRef(std::vector&lt; float &gt; &amp;therow) (function) of class cifti::FloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:55: warning: Member operator=(const FloatMatrixRowRef &amp;right) (function) of class cifti::FloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:56: warning: Member operator=(const ConstFloatMatrixRowRef &amp;right) (function) of class cifti::FloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:57: warning: Member operator=(const float &amp;right) (function) of class cifti::FloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:58: warning: Member operator[](const int64_t &amp;index) (function) of class cifti::FloatMatrixRowRef is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:82: warning: Member Label(const Label &amp;gl) (function) of class cifti::Label is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:85: warning: Member operator=(const Label &amp;gl) (function) of class cifti::Label is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:95: warning: Member hashCode() (function) of class cifti::Label is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:133: warning: Member matches(const Label &amp;rhs, const bool checkColor=false) const (function) of class cifti::Label is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:49: warning: Member LabelTable(const LabelTable &amp;glt) (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:51: warning: Member operator=(const LabelTable &amp;glt) (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:53: warning: Member matches(const LabelTable &amp;rhs, const bool checkColors=false) const (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:55: warning: Member operator==(const LabelTable &amp;rhs) const (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:57: warning: Member operator!=(const LabelTable &amp;rhs) const (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:148: warning: Member createLabelsForKeys(const std::set&lt; int32_t &gt; &amp;newKeys) (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:150: warning: Member writeXML(XmlWriter &amp;xmlWriter) const (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:152: warning: Member readXml(XmlReader &amp;xml) (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:156: warning: Member getKeys(std::vector&lt; int32_t &gt; &amp;keysOut) const (function) of class cifti::LabelTable is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:131: warning: Member addVectors(const float v1[3], const float v2[3], float resultOut[3]) (function) of class cifti::MathFunctions is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:261: warning: Member isNaN(const float number) (function) of class cifti::MathFunctions is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:263: warning: Member isPosInf(const float number) (function) of class cifti::MathFunctions is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:265: warning: Member isNegInf(const float number) (function) of class cifti::MathFunctions is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1079: warning: The following parameter of cifti::MathFunctions::arraysEqual(const float a[], const float b[], const int32_t numElements) is not documented:
  parameter 'numElements'
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1263: warning: The following parameter of cifti::MathFunctions::compareArrays(const float a1[], const float a2[], const int32_t numElements, const float tolerance) is not documented:
  parameter 'numElements'
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'X' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2)
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2)
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'Y' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2)
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2)
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'X' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2)
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2)
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'Y' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2)
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2)
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: The following parameters of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) are not documented:
  parameter 'x1'
  parameter 'y1'
  parameter 'x2'
  parameter 'y2'
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:285: warning: The following parameter of cifti::MathFunctions::normalizedCrossProduct(const float x1[], const float x2[], float resultOut[]) is not documented:
  parameter 'resultOut'
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:285: warning: found documented return type for cifti::MathFunctions::normalizedCrossProduct that does not return anything
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:352: warning: argument 'vectorInOut' of command @param is not found in the argument list of cifti::MathFunctions::normalizeVector(double vector[3])
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:352: warning: The following parameter of cifti::MathFunctions::normalizeVector(double vector[3]) is not documented:
  parameter 'vector'
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:333: warning: argument 'vectorInOut' of command @param is not found in the argument list of cifti::MathFunctions::normalizeVector(float vector[3])
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:333: warning: The following parameter of cifti::MathFunctions::normalizeVector(float vector[3]) is not documented:
  parameter 'vector'
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:216: warning: The following parameter of cifti::MathFunctions::normalVectorDirection(const float v1[3], const float v2[3], const float v3[3], float directionOut[3]) is not documented:
  parameter 'directionOut'
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:216: warning: found documented return type for cifti::MathFunctions::normalVectorDirection that does not return anything
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:50: warning: Member MetaData(const MetaData &amp;o) (function) of class cifti::MetaData is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:52: warning: Member operator=(const MetaData &amp;o) (function) of class cifti::MetaData is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:54: warning: Member operator==(const MetaData &amp;rhs) const (function) of class cifti::MetaData is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:56: warning: Member operator!=(const MetaData &amp;rhs) const (function) of class cifti::MetaData is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:94: warning: Member writeCiftiXML1(XmlWriter &amp;xmlWriter) const (function) of class cifti::MetaData is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:95: warning: Member writeCiftiXML2(XmlWriter &amp;xmlWriter) const (function) of class cifti::MetaData is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:96: warning: Member readCiftiXML1(XmlReader &amp;xml) (function) of class cifti::MetaData is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:97: warning: Member readCiftiXML2(XmlReader &amp;xml) (function) of class cifti::MetaData is not documented.
[ 52%] Built target AimsMergeLabel
[ 52%] Built target AimsMeshes2Graph
[ 52%] Built target AimsMeshArea
[ 52%] Built target AimsOverVolume
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:47: warning: Member getDimensions() const (function) of class cifti::MultiDimArray is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:49: warning: Member resize(const std::vector&lt; I &gt; &amp;dims) (function) of class cifti::MultiDimArray is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:51: warning: Member at(const std::vector&lt; I &gt; &amp;pos) (function) of class cifti::MultiDimArray is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:53: warning: Member at(const std::vector&lt; I &gt; &amp;pos) const (function) of class cifti::MultiDimArray is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:55: warning: Member get(const int &amp;fullDims, const std::vector&lt; I &gt; &amp;indexSelect) (function) of class cifti::MultiDimArray is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:57: warning: Member get(const int &amp;fullDims, const std::vector&lt; I &gt; &amp;indexSelect) const (function) of class cifti::MultiDimArray is not documented.
[ 52%] Built target AimsMeshCut
[ 52%] Built target AimsMeshGenerate
[ 52%] Built target AimsMeshTransform
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:45: warning: Member MultiDimIterator(const std::vector&lt; T &gt; &amp;dimensions) (function) of class cifti::MultiDimIterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:46: warning: Member operator++() (function) of class cifti::MultiDimIterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:47: warning: Member operator++(int) (function) of class cifti::MultiDimIterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:48: warning: Member operator--() (function) of class cifti::MultiDimIterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:49: warning: Member operator--(int) (function) of class cifti::MultiDimIterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:50: warning: Member operator*() const (function) of class cifti::MultiDimIterator is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:51: warning: Member atEnd() const (function) of class cifti::MultiDimIterator is not documented.
[ 52%] Built target AimsRemoveNaN
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:306: warning: Member extension[4] (variable) of struct cifti::nifti1_extender is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:44: warning: Member m_ecode (variable) of struct cifti::NiftiExtension is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:45: warning: Member m_bytes (variable) of struct cifti::NiftiExtension is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:53: warning: Member read(BinaryFile &amp;inFile) (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:54: warning: Member write(BinaryFile &amp;outFile, const int &amp;version=1, const bool &amp;swapEndian=false) (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:55: warning: Member canWriteVersion(const int &amp;version) const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:56: warning: Member isSwapped() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:57: warning: Member version() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:59: warning: Member getDimensions() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:60: warning: Member getSForm() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:61: warning: Member getDataOffset() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:62: warning: Member getDataType() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:63: warning: Member getIntentCode() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:64: warning: Member getIntentName() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:65: warning: Member getDataScaling(double &amp;mult, double &amp;offset) const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:66: warning: Member toString() const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:68: warning: Member setDimensions(const std::vector&lt; int64_t &gt; &amp;dimsIn) (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:69: warning: Member setSForm(const std::vector&lt; std::vector&lt; float &gt; &gt; &amp;sForm) (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:70: warning: Member setIntent(const int32_t &amp;code, const char name[16]) (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:71: warning: Member setDataType(const int16_t &amp;type) (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:72: warning: Member clearDataScaling() (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:73: warning: Member setDataScaling(const double &amp;mult, const double &amp;offset) (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:77: warning: Member operator==(const NiftiHeader &amp;rhs) const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:78: warning: Member operator!=(const NiftiHeader &amp;rhs) const (function) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:50: warning: Member m_extensions (variable) of struct cifti::NiftiHeader is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:62: warning: Member openRead(const AString &amp;filename) (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:63: warning: Member writeNew(const AString &amp;filename, const NiftiHeader &amp;header, const int &amp;version=1, const bool &amp;withRead=false, const bool &amp;swapEndian=false) (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:64: warning: Member getFilename() const (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:65: warning: Member overrideDimensions(const std::vector&lt; int64_t &gt; &amp;newDims) (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:66: warning: Member close() (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:67: warning: Member getHeader() const (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:68: warning: Member getDimensions() const (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:69: warning: Member getNumComponents() const (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:73: warning: Member readData(T *dataOut, const int &amp;fullDims, const std::vector&lt; int64_t &gt; &amp;indexSelect, const bool &amp;tolerateShortRead=false) (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:75: warning: Member writeData(const T *dataIn, const int &amp;fullDims, const std::vector&lt; int64_t &gt; &amp;indexSelect) (function) of class cifti::NiftiIO is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:103: warning: Member open(const AString &amp;filename, const BinaryFile::OpenMode &amp;opmode) (function) of class cifti::StrFileImpl is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:104: warning: Member close() (function) of class cifti::StrFileImpl is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:105: warning: Member seek(const int64_t &amp;position) (function) of class cifti::StrFileImpl is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:106: warning: Member pos() (function) of class cifti::StrFileImpl is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:107: warning: Member read(void *dataOut, const int64_t &amp;count, int64_t *numRead) (function) of class cifti::StrFileImpl is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:108: warning: Member write(const void *dataIn, const int64_t &amp;count) (function) of class cifti::StrFileImpl is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:72: warning: Member getFilename() const (function) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:68: warning: Member m_fileName (variable) of class cifti::BinaryFile::ImplInterface is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:41: warning: Member dot(const Vector3D &amp;right) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:42: warning: Member cross(const Vector3D &amp;right) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:43: warning: Member normal(float *origLength=NULL) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:44: warning: Member length() const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:45: warning: Member lengthsquared() const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:48: warning: Member Vector3D(const float &amp;x, const float &amp;y, const float &amp;z) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:49: warning: Member Vector3D(const float *right) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:51: warning: Member operator[](const int64_t &amp;index) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:52: warning: Member operator[](const int64_t &amp;index) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:53: warning: Member operator[](const int32_t &amp;index) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:54: warning: Member operator[](const int32_t &amp;index) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:55: warning: Member operator=(const float *right) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:57: warning: Member operator+=(const Vector3D &amp;right) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:58: warning: Member operator-=(const Vector3D &amp;right) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:59: warning: Member operator*=(const float &amp;right) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:60: warning: Member operator/=(const float &amp;right) (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:61: warning: Member operator+(const Vector3D &amp;right) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:62: warning: Member operator-(const Vector3D &amp;right) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:63: warning: Member operator-() const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:64: warning: Member operator*(const float &amp;right) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:65: warning: Member operator/(const float &amp;right) const (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:66: warning: Member operator float *() (function) of class cifti::Vector3D is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:47: warning: Member OrientTypes (enumeration) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:57: warning: Member VolumeSpace(const int64_t dims[3], const std::vector&lt; std::vector&lt; float &gt; &gt; &amp;sform) (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:58: warning: Member VolumeSpace(const int64_t dims[3], const float sform[12]) (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:59: warning: Member setSpace(const int64_t dims[3], const std::vector&lt; std::vector&lt; float &gt; &gt; &amp;sform) (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:60: warning: Member setSpace(const int64_t dims[3], const float sform[12]) (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:61: warning: Member getDims() const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:62: warning: Member getSform() const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:63: warning: Member getSpacingVectors(Vector3D &amp;iStep, Vector3D &amp;jStep, Vector3D &amp;kStep, Vector3D &amp;origin) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:64: warning: Member matchesVolumeSpace(const VolumeSpace &amp;right) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:65: warning: Member operator==(const VolumeSpace &amp;right) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:66: warning: Member operator!=(const VolumeSpace &amp;right) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:115: warning: Member indexValid(const T *indexIn) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:129: warning: Member getIndex(const int64_t &amp;indexIn1, const int64_t &amp;indexIn2, const int64_t &amp;indexIn3) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:135: warning: Member getIndex(const T *indexIn) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:140: warning: Member readCiftiXML1(XmlReader &amp;xml) (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:141: warning: Member readCiftiXML2(XmlReader &amp;xml) (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:142: warning: Member writeCiftiXML1(XmlWriter &amp;xml) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:143: warning: Member writeCiftiXML2(XmlWriter &amp;xml) const (function) of class cifti::VolumeSpace is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:39: warning: Member VoxelIJK(int64_t i, int64_t j, int64_t k) (function) of struct cifti::VoxelIJK is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:41: warning: Member VoxelIJK(const T ijk[3]) (function) of struct cifti::VoxelIJK is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:46: warning: Member operator&lt;(const VoxelIJK &amp;rhs) const (function) of struct cifti::VoxelIJK is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:54: warning: Member operator==(const VoxelIJK &amp;rhs) const (function) of struct cifti::VoxelIJK is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:60: warning: Member operator!=(const VoxelIJK &amp;rhs) const (function) of struct cifti::VoxelIJK is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:37: warning: Member m_ijk[3] (variable) of struct cifti::VoxelIJK is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:155: warning: Member mandatoryVals (variable) of struct cifti::XmlAttributesResult is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:156: warning: Member optionalVals (variable) of struct cifti::XmlAttributesResult is not documented.
done
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:152: warning: Member present (variable) of struct cifti::XmlAttributesResult::OptionalStatus is not documented.
/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:153: warning: Member value (variable) of struct cifti::XmlAttributesResult::OptionalStatus is not documented.
done
[ 52%] Built target AimsSplitRgb
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Possible hints:
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The HTML pages are in ../../share/doc/soma-workflow-3.3/sphinx.
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done
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WARNING: autodoc: failed to import module 'info' from module 'populse_db'; the following exception was raised:
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done
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[ 76%] Built target siTriangModel
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loading intersphinx inventory from <a href='https://docs.python.org/2.7/objects.inv'>https://docs.python.org/2.7/objects.inv</a>...
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loading intersphinx inventory from /volatile/a-sac-ns-brainvisa/bbi-nightly/cea-qt6-5.4/build/share/doc/pyaims-5.2/sphinx/objects.inv...
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[ 85%] Built target AimsAdaptiveSelVoxel
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loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to &lt;class 'FileNotFoundError'&gt;: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv'
[ 85%] Built target AimsGL2Activity
[ 85%] Built target AimsIndividStackSlices
loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv...
loading intersphinx inventory from <a href='https://docs.python.org/3.12/objects.inv'>https://docs.python.org/3.12/objects.inv</a>...
py-modindex [ 85%] Built target AimsInterSliceNormalize
done
writing additional pages... search [ 85%] Built target bioDetectSlices
[ 85%] Built target AimsManualRegistration
[ 85%] Built target AimsMidPlaneAlign
done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 3 warnings.

The HTML pages are in ../../share/doc/populse-db-3.0.
[ 85%] Built target bioprocessing
[ 85%] Built target bioModelClassify
[ 85%] Built target bioModelGenerate
[ 85%] Built target AimsRegisterQNEstimate
[ 85%] Built target AimsSelectGradPoints
[ 85%] Built target bioKMeans
[ 85%] Built target AimsSegmentationEM
[ 85%] Built target AimsSparseMatrixSmoothing
loading pickled environment... [ 85%] Built target constelBundlesFiltering
[ 85%] Built target constelConnectionDensityTexture
[ 85%] Built target constelConnectivityMatrix
[ 85%] Built target constelFibersLengths
[ 85%] Built target constelSelectFibersFromMesh
[ 85%] Built target AimsGyriStuff
[ 85%] Built target constelSelectBundlesFromNames
[ 85%] Built target AimsConstraintCleaner
[ 85%] Built target constelMeanConnectivityProfileFromMatrix
[ 85%] Built target AimsCorticalReferential
[ 85%] Built target AimsMeshIsoLine
[ 85%] Built target AimsCorticalThickness
[ 85%] Built target AimsMeshMedianSurface
[ 85%] Built target AimsFunctionProjection
[ 90%] Built target AimsCoordinatesToTexture
[autosummary] generating autosummary for: index.rst
[ 90%] Built target AimsCoordinateGridMesh
[ 90%] Built target AimsCoordinatesTextureToMesh
[ 90%] Built target AimsFlattenCortex
[ 90%] Built target AimsParameterizeGyri
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: [ 90%] Built target AimsParameterizeSulcus
0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 2 warnings.

The HTML pages are in ../../share/doc/soma-io-5.2.
libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

[ 90%] Built target AimsPlotOnSPhericalAtlas
[ 90%] Built target AimsSulcusCorticalSnake
done
[ 90%] Built target AimsTextureToAtlas
[ 90%] Built target surfTexActivationSimulation
[autosummary] generating autosummary for: bv_command.rst, bv_command_help.rst, casa_distro_admin_command.rst, casa_distro_admin_command_help.rst, casa_distro_command.rst, casa_distro_command_help.rst, concepts.rst, developer.rst, index.rst, nightly.rst, technical.rst
[ 90%] Built target AimsMeshToAtlas
[ 90%] Built target AimsSulcusNormalizeDepthProfile
[ 90%] Built target AimsCheck2DCoordinates
[ 90%] Built target surfStructuralAnalysis
[ 90%] Built target AimsConformalMapping
[ 90%] Built target AimsMeshCoordinatesToDecimated
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 3 source files that are out of date
updating environment: The XKEYBOARD keymap compiler (xkbcomp) reports:
&gt; Warning:          Could not resolve keysym XF86CameraAccessEnable
&gt; Warning:          Could not resolve keysym XF86CameraAccessDisable
&gt; Warning:          Could not resolve keysym XF86CameraAccessToggle
&gt; Warning:          Could not resolve keysym XF86NextElement
&gt; Warning:          Could not resolve keysym XF86PreviousElement
&gt; Warning:          Could not resolve keysym XF86AutopilotEngageToggle
&gt; Warning:          Could not resolve keysym XF86MarkWaypoint
&gt; Warning:          Could not resolve keysym XF86Sos
&gt; Warning:          Could not resolve keysym XF86NavChart
&gt; Warning:          Could not resolve keysym XF86FishingChart
&gt; Warning:          Could not resolve keysym XF86SingleRangeRadar
&gt; Warning:          Could not resolve keysym XF86DualRangeRadar
&gt; Warning:          Could not resolve keysym XF86RadarOverlay
&gt; Warning:          Could not resolve keysym XF86TraditionalSonar
&gt; Warning:          Could not resolve keysym XF86ClearvuSonar
&gt; Warning:          Could not resolve keysym XF86SidevuSonar
&gt; Warning:          Could not resolve keysym XF86NavInfo
Errors from xkbcomp are not fatal to the X server
[ 90%] Built target AimsExtractGyrus
0 added, 6 changed, 0 removed
reading sources... [ 17%] bv_command
[ 90%] Built target AimsMeshToMeshPoint
[ 90%] Built target AimsPlotCoordinatesOnMesh
[ 90%] Built target PlotFociForValidation
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 1 warning.

The HTML pages are in ../../../share/doc/aimsdata-5.2/dev_doc.
[ 90%] Built target AimsCoordinatesToIndex
[autosummary] generating autosummary for: core_api.rst, index.rst
reading sources... [ 33%] bv_command_help
[ 90%] Built target AimsGeodesicPath
[ 90%] Built target AimsGroupGyri
[ 90%] Built target AimsGyriRegularization
[ 90%] Built target AimsInterpolateVolumeToSurface
[ 90%] Built target AimsTextureCompare
reading sources... [ 50%] casa_distro_admin_command
[ 90%] Built target AimsSulcalLines
[ 90%] Create "share/doc/3.3"
[ 90%] Built target AimsExactDepthArea
[ 90%] Built target anatomist-bin
[ 90%] Built target AimsReadDpy
[ 90%] Built target soma-workflow-devdoc
[ 90%] Built target bioReadDpy
[ 90%] Built target AimsAmyloidLoadAvgDistNeigh
[ 90%] Built target AimsAffineRegister
[ 90%] Built target AimsAmyloidDensity
[ 90%] Built target AimsAmyloidLoadInvSurfVor
[ 90%] Built target AimsAmyloidDetection
[ 90%] Built target AimsAmyloidFiltering
[ 90%] Built target AimsAmyloidMRIDetection
[ 90%] Built target AimsAreaNbConnectCompRatio
[ 90%] Built target AimsBinaryBoundingBox
[ 90%] Built target AimsBorderCrop
[ 90%] Built target AimsComponentFeaturesProcess
[ 90%] Built target AimsBinaryBorder
[ 90%] Built target AimsBoundingBoxCalculation
[ 90%] Built target AimsBoundingBoxExtraction
[ 90%] Built target AimsComponentFeaturesVisualize
[ 90%] Built target AimsComponentFeaturesMapGenerate
[ 90%] Built target AimsBorderLineProj
[ 90%] Built target AimsCorrectImages
[ 90%] Built target populse-db-sphinx
WARNING: impossible to use version 2 of sip/Qt API.
loading pickled environment... [ 90%] Built target AimsChannelProcess
[ 90%] Built target AimsCreateFieldsFromMotion
[ 90%] Built target soma-io-sphinx
[ 90%] Built target AimsEntropicThresholding
loading pickled environment... [ 90%] Built target AimsEqualizer
[ 90%] Built target AimsFovCentering
reading sources... [ 67%] casa_distro_admin_command_help
[ 90%] Built target AimsGenerateVolume
[ 90%] Built target AimsGridCalibrate
[ 90%] Built target AimsHeightFiltering
[ 90%] Built target AimsGridGenerate
[ 90%] Built target AimsIndexCluster
[autosummary] generating autosummary for: index.rst
building [mo]: targets for 0 po files that are out of date
writing output... 
[ 90%] Built target AimsIndividSlices
[autosummary] generating autosummary for: index.rst
building [html]: targets for 0 source files that are out of date
updating environment: building [mo]: targets for 0 po files that are out of date
writing output... 
0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 2 warnings.

The HTML pages are in ../../share/doc/brainrat-gpl-5.2/user_doc.
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 1 warning.

The HTML pages are in ../../share/doc/morphologist-ui-5.2.
[ 90%] Built target AimsInterlaceVolumes
[ 90%] Built target AimsInterpolate
[ 90%] Built target AimsLabelReorder
[ 90%] Built target aimsdata-sphinx
[ 90%] Built target AimsMaskContour
[ 90%] Built target AimsMeshMatching
[ 90%] Built target AimsMergeFFDLabels
[ 90%] Built target AimsMosaic
[ 90%] Built target AimsMIBucketRegister
[ 90%] Built target AimsMultiRecal
[ 90%] Built target AimsMidPlaneMask
[ 90%] Built target AimsRebuildComp
[ 90%] Built target AimsOverlapInfo
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 1 warning.

The HTML pages are in ../../share/doc/anatomist-5.2/dev_doc.
[ 90%] Built target AimsResampleFromFieldsData
[ 90%] Built target AimsRgbToHsv
[ 90%] Built target AimsRoiOverlap
[ 90%] Built target AimsSegment2Modes
The XKEYBOARD keymap compiler (xkbcomp) reports:
&gt; Warning:          Could not resolve keysym XF86CameraAccessEnable
&gt; Warning:          Could not resolve keysym XF86CameraAccessDisable
&gt; Warning:          Could not resolve keysym XF86CameraAccessToggle
&gt; Warning:          Could not resolve keysym XF86NextElement
&gt; Warning:          Could not resolve keysym XF86PreviousElement
&gt; Warning:          Could not resolve keysym XF86AutopilotEngageToggle
&gt; Warning:          Could not resolve keysym XF86MarkWaypoint
&gt; Warning:          Could not resolve keysym XF86Sos
&gt; Warning:          Could not resolve keysym XF86NavChart
&gt; Warning:          Could not resolve keysym XF86FishingChart
&gt; Warning:          Could not resolve keysym XF86SingleRangeRadar
&gt; Warning:          Could not resolve keysym XF86DualRangeRadar
&gt; Warning:          Could not resolve keysym XF86RadarOverlay
&gt; Warning:          Could not resolve keysym XF86TraditionalSonar
&gt; Warning:          Could not resolve keysym XF86ClearvuSonar
&gt; Warning:          Could not resolve keysym XF86SidevuSonar
&gt; Warning:          Could not resolve keysym XF86NavInfo
[ 90%] Built target AimsSamplingInfo
Errors from xkbcomp are not fatal to the X server
[ 90%] Built target AimsSeparateComp
[ 90%] Built target AimsStereologySampling
[ 90%] Built target AimsStereotaxy
[ 90%] Built target AimsWatershed
[ 90%] Built target AimsSubSamplingConservative
[ 90%] Built target AimsSeededWatershed
[ 90%] Built target bioCellEvaluate
[ 90%] Built target bioCellBoundingBoxesGenerate
[ 90%] Built target bioClusterStatistics
[ 90%] Built target bioComponentConnexe
libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

reading sources... [ 83%] casa_distro_command
[autosummary] generating autosummary for: aims_config.rst, aims_io.rst, changelog.rst, coordinates_systems.rst, formats.rst, index.rst, spm_format.rst, tutorial.rst
[ 90%] Built target bioExtractAmyloidLoad
[ 90%] Built target bioExtractDice
[ 90%] Built target bioCorrectMissingLabels
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 2 warnings.

The HTML pages are in ../../../share/doc/aimsdata-5.2/user_doc.
[ 90%] Built target bioMacGetSingleBrain
[ 90%] Built target bioFindCellSeeds
[ 90%] Built target bioPrepareData4DlIndiv
[ 90%] Built target bioRenumberConnectComp
The XKEYBOARD keymap compiler (xkbcomp) reports:
&gt; Warning:          Could not resolve keysym XF86CameraAccessEnable
&gt; Warning:          Could not resolve keysym XF86CameraAccessDisable
&gt; Warning:          Could not resolve keysym XF86CameraAccessToggle
&gt; Warning:          Could not resolve keysym XF86NextElement
&gt; Warning:          Could not resolve keysym XF86PreviousElement
&gt; Warning:          Could not resolve keysym XF86AutopilotEngageToggle
&gt; Warning:          Could not resolve keysym XF86MarkWaypoint
&gt; Warning:          Could not resolve keysym XF86Sos
&gt; Warning:          Could not resolve keysym XF86NavChart
&gt; Warning:          Could not resolve keysym XF86FishingChart
&gt; Warning:          Could not resolve keysym XF86SingleRangeRadar
&gt; Warning:          Could not resolve keysym XF86DualRangeRadar
&gt; Warning:          Could not resolve keysym XF86RadarOverlay
&gt; Warning:          Could not resolve keysym XF86TraditionalSonar
&gt; Warning:          Could not resolve keysym XF86ClearvuSonar
&gt; Warning:          Could not resolve keysym XF86SidevuSonar
&gt; Warning:          Could not resolve keysym XF86NavInfo
Errors from xkbcomp are not fatal to the X server
[ 90%] Built target bioStatDominanceAppli
[ 90%] Built target bioVoxelFeatures
[ 90%] Built target AimsAdaptiveGaussianSmoothing
[ 90%] Built target AimsEdgeExtract
[ 90%] Built target AimsExtremaMap
[autosummary] generating autosummary for: axon_manual.rst, axon_manual2.rst, changelog.rst, connectomist_tutorial.rst, index.rst, morphologist_tutorial.rst, tutorial.rst
[ 90%] Built target AimsRegionGrowingExtrema
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: [ 90%] Built target AimsSigmaImageCalculate
0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 2 warnings.

The HTML pages are in ../../share/doc/axon-5.2/user_doc.
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa'
[ 90%] Create "share/doc/5.2"
[ 90%] Create "share/doc/3.0"
[ 90%] Built target soma-workflow-doc
[ 90%] Built target bioVoxelWiseStatistics
[ 90%] Built target soma-io-devdoc
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:50,594::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:50,597::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
[ 90%] Built target populse-db-devdoc
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 1 warning.

The HTML pages are in ../../share/doc/anatomist-5.2/user_doc.
[100%] Built target bv_commands_doc
[ 95%] Built target soma-io-doc
Qt WebEngine seems to be initialized from a plugin. Please set Qt::AA_ShareOpenGLContexts using QCoreApplication::setAttribute and QSGRendererInterface::OpenGLRhi using QQuickWindow::setGraphicsApi before constructing QGuiApplication.
[100%] Built target populse-db-doc
Attribute Qt::AA_ShareOpenGLContexts must be set before QCoreApplication is created.
[100%] Built target brainrat-gpl-usrsphinx
[100%] Create "share/doc/5.2"
[100%] Built target anatomist-free-sphinx
[100%] Built target morphologist-ui-usrsphinx
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa'
reading sources... [100%] casa_distro_command_help
[100%] Built target brainrat-gpl-usrdoc
[100%] Create "share/doc/5.2"
[100%] Create "share/doc/5.2"
[100%] Built target brainrat-gpl-doc
[100%] Built target morphologist-ui-usrdoc
[100%] Built target anatomist-free-devdoc

../../../src/development/casa-distro/master/doc/source/bv_command_help.rst:13: WARNING: Option list ends without a blank line; unexpected unindent.
/casa/host/src/development/casa-distro/master/doc/source/bv_command_help.rst:13: WARNING: Option list ends without a blank line; unexpected unindent.
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:40: WARNING: duplicate label casa-distro-admin-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:57: WARNING: duplicate label casa-distro-admin-singularity-deb-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:83: WARNING: duplicate label casa-distro-admin-create-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:204: WARNING: duplicate label casa-distro-admin-publish-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:245: WARNING: duplicate label casa-distro-admin-create-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:368: WARNING: duplicate label casa-distro-admin-publish-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:394: WARNING: duplicate label casa-distro-admin-bbi-daily-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:530: WARNING: duplicate label casa-distro-admin-local-install-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:576: WARNING: duplicate label casa-distro-admin-convert-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:63: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:117: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:219: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:263: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:383: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:456: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:537: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:580: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:40: WARNING: duplicate label casa-distro-admin-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:57: WARNING: duplicate label casa-distro-admin-singularity-deb-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:83: WARNING: duplicate label casa-distro-admin-create-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:204: WARNING: duplicate label casa-distro-admin-publish-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:245: WARNING: duplicate label casa-distro-admin-create-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:368: WARNING: duplicate label casa-distro-admin-publish-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:394: WARNING: duplicate label casa-distro-admin-bbi-daily-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:530: WARNING: duplicate label casa-distro-admin-local-install-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:576: WARNING: duplicate label casa-distro-admin-convert-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:63: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:117: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:219: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:263: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:383: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:456: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:537: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:580: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst
../../../src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:292: ERROR: Unexpected indentation.
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:40: WARNING: duplicate label casa-distro-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:57: WARNING: duplicate label casa-distro-distro-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:65: WARNING: duplicate label casa-distro-list-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:115: WARNING: duplicate label casa-distro-run-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:209: WARNING: duplicate label casa-distro-pull-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:311: WARNING: duplicate label casa-distro-shell-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:402: WARNING: duplicate label casa-distro-mrun-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:499: WARNING: duplicate label casa-distro-bv-maker-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:69: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:123: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:248: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:316: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:413: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:504: WARNING: duplicate label casa_distro_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:292: ERROR: Unexpected indentation.
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:40: WARNING: duplicate label casa-distro-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:57: WARNING: duplicate label casa-distro-distro-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:65: WARNING: duplicate label casa-distro-list-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:115: WARNING: duplicate label casa-distro-run-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:209: WARNING: duplicate label casa-distro-pull-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:311: WARNING: duplicate label casa-distro-shell-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:402: WARNING: duplicate label casa-distro-mrun-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:499: WARNING: duplicate label casa-distro-bv-maker-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:69: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:123: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:248: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:316: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:413: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
/casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:504: WARNING: duplicate label casa_distro_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst
looking for now-outdated files... none found
pickling environment... [100%] Built target aims-free-usrsphinx
done
checking consistency... done
preparing documents... done
copying assets... copying static files... [100%] Create "share/doc/5.2"
[100%] Built target axon-usrsphinx
done
copying extra files... done
done
writing output... [ 14%] bv_command
[100%] Built target aims-free-usrdoc
[100%] Create "share/doc/5.2"
done
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to &lt;class 'FileNotFoundError'&gt;: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv'
loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/capsul-2.6/objects.inv...
loading intersphinx inventory from <a href='https://docs.python.org/3.12/objects.inv'>https://docs.python.org/3.12/objects.inv</a>...
[100%] Built target axon-usrdoc
[100%] Built target anatomist-free-usrsphinx
writing output... [ 29%] bv_command_help
writing output... [ 43%] casa_distro_admin_command
[100%] Create "share/doc/5.2"
[100%] Built target anatomist-free-usrdoc
[100%] Built target anatomist-free-doc
writing output... [ 57%] casa_distro_admin_command_help
writing output... [ 71%] casa_distro_command
WARNING: Failed to import morphologist.intra_analysis.
Possible hints:
* AttributeError: module 'morphologist' has no attribute 'intra_analysis'
* ImportError: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py)
qt backend: PyQt6
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 1 changed, 0 removed
reading sources... [100%] core_api
writing output... [ 86%] casa_distro_command_help
writing output... [100%] index
Starting Anatomist.....

generating indices... done
highlighting module code... 
writing additional pages... search done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 66 warnings.

The HTML pages are in ../../share/doc/casa-distro-3.2.
Generating BrainVISA processes documentation
qt backend: PyQt6

WARNING: autodoc: failed to import module 'intra_analysis' from module 'morphologist'; the following exception was raised:
cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py)
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... [100%] Built target bv_ontology_doc
done
copying assets... copying static files... done
copying extra files... done
done
writing output... [ 50%] core_api
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_info.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_sources.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_status.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_configure.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_build.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_doc.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_testref.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_test.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_pack.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_install_pack.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_testref_pack.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_test_pack.rst
generate: /casa/host/src/development/brainvisa-cmake/master/doc/sphinx/bv_maker_help_publish_pack.rst
loading pickled environment... writing output... [100%] index
generating indices... genindex py-modindex done
highlighting module code... 
writing additional pages... search done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 3 warnings.

The HTML pages are in ../../share/doc/morphologist-ui-5.2/dev_doc.
done
[autosummary] generating autosummary for: bv_env.rst, bv_maker.rst, bv_maker_help.rst, bv_maker_help_build.rst, bv_maker_help_configure.rst, bv_maker_help_doc.rst, bv_maker_help_info.rst, bv_maker_help_install_pack.rst, bv_maker_help_pack.rst, bv_maker_help_publish_pack.rst, ..., bv_maker_help_testref.rst, bv_maker_help_testref_pack.rst, cmake_functions.rst, compile_existing.rst, configuration.rst, dependencies.rst, documenting.rst, index.rst, new_project.rst, testing_monitoring.rst
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 14 source files that are out of date
updating environment: 0 added, 15 changed, 0 removed
reading sources... [  7%] bv_maker
reading sources... [ 13%] bv_maker_help
reading sources... [ 20%] bv_maker_help_build
reading sources... [ 27%] bv_maker_help_configure
reading sources... [ 33%] bv_maker_help_doc
reading sources... [ 40%] bv_maker_help_info
reading sources... [ 47%] bv_maker_help_install_pack
reading sources... [ 53%] bv_maker_help_pack
reading sources... [ 60%] bv_maker_help_publish_pack
reading sources... [ 67%] bv_maker_help_sources
reading sources... [ 73%] bv_maker_help_status
reading sources... [ 80%] bv_maker_help_test
reading sources... [ 87%] bv_maker_help_test_pack
[100%] Built target casa-distro-sphinx
reading sources... [ 93%] bv_maker_help_testref
[autosummary] generating autosummary for: capsul.rst, developer_manual.rst, index.rst, python.rst, python_bv_configuration.rst, python_bv_data.rst, python_bv_data_gui.rst, python_bv_processing.rst, python_bv_processing_gui.rst, python_bv_tools.rst, usecases.rst, usecases_nb.ipynb
reading sources... [100%] bv_maker_help_testref_pack
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... [100%] Create "share/doc/3.2"
done
copying assets... copying static files... [100%] Built target morphologist-ui-sphinx
done
copying extra files... done
done
writing output... [  6%] bv_maker
[100%] Built target casa-distro-devdoc
[100%] Create "share/doc/5.2"
[100%] Built target casa-distro-doc
[100%] Built target morphologist-ui-devdoc
writing output... [ 12%] bv_maker_help
[100%] Built target morphologist-ui-doc
writing output... [ 19%] bv_maker_help_build
writing output... [ 25%] bv_maker_help_configure
writing output... [ 31%] bv_maker_help_doc
writing output... [ 38%] bv_maker_help_info
writing output... [ 44%] bv_maker_help_install_pack
writing output... [ 50%] bv_maker_help_pack
writing output... [ 56%] bv_maker_help_publish_pack
writing output... [ 62%] bv_maker_help_sources
writing output... [ 69%] bv_maker_help_status
writing output... [ 75%] bv_maker_help_test
writing output... [ 81%] bv_maker_help_test_pack
writing output... [ 88%] bv_maker_help_testref
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writing output... [100%] index
generating indices... genindex done
highlighting module code... 
writing additional pages... search done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.

The HTML pages are in ../../share/doc/brainvisa-cmake-6.0.
config file : /casa/home/.anatomist/config/settings.cfg
[100%] Built target brainvisa-cmake-usrsphinx
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[100%] Built target brainvisa-cmake-usrdoc
[100%] Built target brainvisa-cmake-doc
This plugin does not support propagateSizeHints()
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:53,394::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:53,501::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:53,536::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:53,584::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:53,674::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:53,758::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:13:53,857::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'.
[NbConvertApp] Converting notebook /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb.in to notebook

/casa/host/build/python/soma/config.py:docstring of soma.config.BRAINVISA_SHARE:1: WARNING: duplicate object description of soma.config.BRAINVISA_SHARE, other instance in api, use :no-index: for one of them
/casa/host/build/python/soma/controller/controller.py:docstring of soma.controller.controller.Controller.add_trait:1: WARNING: duplicate object description of soma.controller.controller.Controller.add_trait, other instance in api, use :no-index: for one of them
/casa/host/build/python/soma/controller/controller.py:docstring of soma.controller.controller.Controller.is_user_trait:1: WARNING: duplicate object description of soma.controller.controller.Controller.is_user_trait, other instance in api, use :no-index: for one of them
/casa/host/build/python/soma/controller/controller.py:docstring of soma.controller.controller.Controller.remove_trait:1: WARNING: duplicate object description of soma.controller.controller.Controller.remove_trait, other instance in api, use :no-index: for one of them
/casa/host/build/python/soma/controller/controller.py:docstring of soma.controller.controller.Controller.user_traits:1: WARNING: duplicate object description of soma.controller.controller.Controller.user_traits, other instance in api, use :no-index: for one of them
WARNING: autodoc: failed to import module 'crypt' from module 'soma'; the following exception was raised:
No module named 'Crypto'
/casa/host/build/python/soma/fom.py:docstring of soma.fom.AttributesToPaths.allowed_extensions_for_parameter:5: ERROR: Unexpected indentation.
/casa/host/build/python/soma/fom.py:docstring of soma.fom.AttributesToPaths.allowed_extensions_for_parameter:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/casa/host/build/python/soma/mpfork.py:docstring of soma.mpfork.worker:4: ERROR: Unexpected indentation.
/casa/host/build/python/soma/mpfork.py:docstring of soma.mpfork.worker:5: WARNING: Block quote ends without a blank line; unexpected unindent.
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets... copying static files... [NbConvertApp] Writing 59249 bytes to /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb
done
copying extra files... done
done
writing output... [ 50%] api
-- nbsphinx should work. --
Using Qt backend: PyQt6
source: /casa/host/src/capsul/master/doc/source
dest: /casa/host/build/share/doc/capsul-2.6
cwd: /casa/host/src/capsul/master/doc/source
exec: /usr/bin/python3 -m jupyter nbconvert --to notebook --output /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb.in
loading pickled environment... libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

The XKEYBOARD keymap compiler (xkbcomp) reports:
&gt; Warning:          Could not resolve keysym XF86CameraAccessEnable
&gt; Warning:          Could not resolve keysym XF86CameraAccessDisable
&gt; Warning:          Could not resolve keysym XF86CameraAccessToggle
&gt; Warning:          Could not resolve keysym XF86NextElement
&gt; Warning:          Could not resolve keysym XF86PreviousElement
&gt; Warning:          Could not resolve keysym XF86AutopilotEngageToggle
&gt; Warning:          Could not resolve keysym XF86MarkWaypoint
&gt; Warning:          Could not resolve keysym XF86Sos
&gt; Warning:          Could not resolve keysym XF86NavChart
&gt; Warning:          Could not resolve keysym XF86FishingChart
&gt; Warning:          Could not resolve keysym XF86SingleRangeRadar
&gt; Warning:          Could not resolve keysym XF86DualRangeRadar
&gt; Warning:          Could not resolve keysym XF86RadarOverlay
&gt; Warning:          Could not resolve keysym XF86TraditionalSonar
&gt; Warning:          Could not resolve keysym XF86ClearvuSonar
&gt; Warning:          Could not resolve keysym XF86SidevuSonar
&gt; Warning:          Could not resolve keysym XF86NavInfo
Errors from xkbcomp are not fatal to the X server
libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

The XKEYBOARD keymap compiler (xkbcomp) reports:
&gt; Warning:          Could not resolve keysym XF86CameraAccessEnable
&gt; Warning:          Could not resolve keysym XF86CameraAccessDisable
&gt; Warning:          Could not resolve keysym XF86CameraAccessToggle
&gt; Warning:          Could not resolve keysym XF86NextElement
&gt; Warning:          Could not resolve keysym XF86PreviousElement
&gt; Warning:          Could not resolve keysym XF86AutopilotEngageToggle
&gt; Warning:          Could not resolve keysym XF86MarkWaypoint
&gt; Warning:          Could not resolve keysym XF86Sos
&gt; Warning:          Could not resolve keysym XF86NavChart
&gt; Warning:          Could not resolve keysym XF86FishingChart
&gt; Warning:          Could not resolve keysym XF86SingleRangeRadar
&gt; Warning:          Could not resolve keysym XF86DualRangeRadar
&gt; Warning:          Could not resolve keysym XF86RadarOverlay
&gt; Warning:          Could not resolve keysym XF86TraditionalSonar
&gt; Warning:          Could not resolve keysym XF86ClearvuSonar
&gt; Warning:          Could not resolve keysym XF86SidevuSonar
&gt; Warning:          Could not resolve keysym XF86NavInfo
Errors from xkbcomp are not fatal to the X server
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa'
libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

The XKEYBOARD keymap compiler (xkbcomp) reports:
&gt; Warning:          Could not resolve keysym XF86CameraAccessEnable
&gt; Warning:          Could not resolve keysym XF86CameraAccessDisable
&gt; Warning:          Could not resolve keysym XF86CameraAccessToggle
&gt; Warning:          Could not resolve keysym XF86NextElement
&gt; Warning:          Could not resolve keysym XF86PreviousElement
&gt; Warning:          Could not resolve keysym XF86AutopilotEngageToggle
&gt; Warning:          Could not resolve keysym XF86MarkWaypoint
&gt; Warning:          Could not resolve keysym XF86Sos
&gt; Warning:          Could not resolve keysym XF86NavChart
&gt; Warning:          Could not resolve keysym XF86FishingChart
&gt; Warning:          Could not resolve keysym XF86SingleRangeRadar
&gt; Warning:          Could not resolve keysym XF86DualRangeRadar
&gt; Warning:          Could not resolve keysym XF86RadarOverlay
&gt; Warning:          Could not resolve keysym XF86TraditionalSonar
&gt; Warning:          Could not resolve keysym XF86ClearvuSonar
&gt; Warning:          Could not resolve keysym XF86SidevuSonar
&gt; Warning:          Could not resolve keysym XF86NavInfo
Errors from xkbcomp are not fatal to the X server
done
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to &lt;class 'FileNotFoundError'&gt;: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv'
loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/dev_doc/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to &lt;class 'FileNotFoundError'&gt;: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv'
loading intersphinx inventory from <a href='https://docs.python.org/3.12/objects.inv'>https://docs.python.org/3.12/objects.inv</a>...
loading intersphinx inventory from <a href='https://numpy.org/doc/stable/objects.inv'>https://numpy.org/doc/stable/objects.inv</a>...
writing output... [100%] index
generating indices... genindex done
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv...
py-modindex [autosummary] generating autosummary for: api/api.rst, api/attributes.rst, api/engine.rst, api/in_context.rst, api/index.rst, api/info.rst, api/pipeline.rst, api/plugins.rst, api/process.rst, api/qt_apps.rst, ..., api/subprocess.rst, api/utils.rst, documentation.rst, index.rst, installation.rst, status.rst, tutorial/capsul_tutorial.ipynb, user_guide_tree/advanced_usage.rst, user_guide_tree/index.rst, user_guide_tree/xml_spec.rst
done
highlighting module code... [  3%] soma.application
highlighting module code... [  5%] soma.archive
highlighting module code... [  8%] soma.bufferandfile
highlighting module code... [ 11%] soma.config
highlighting module code... [ 14%] soma.controller.controller
highlighting module code... [ 16%] soma.debug
highlighting module code... [ 19%] soma.factory
highlighting module code... [ 22%] soma.fom
highlighting module code... [ 24%] soma.global_naming
highlighting module code... [ 27%] soma.html
highlighting module code... [ 30%] soma.importer
highlighting module code... [ 32%] soma.logging
highlighting module code... [ 35%] soma.minf.api
highlighting module code... [ 38%] soma.mpfork
highlighting module code... [ 41%] soma.notification
highlighting module code... [ 43%] soma.path
highlighting module code... [ 46%] soma.qimage2ndarray
highlighting module code... [ 49%] soma.qt_gui.controller_widget
highlighting module code... [ 51%] soma.qt_gui.io
highlighting module code... [ 54%] soma.qt_gui.qtThread
highlighting module code... [ 57%] soma.qt_gui.qt_backend
highlighting module code... [ 59%] soma.qt_gui.rangeSlider
highlighting module code... [ 62%] soma.qt_gui.timered_widgets
highlighting module code... [ 65%] soma.safemkdir
highlighting module code... [ 68%] soma.serialization
highlighting module code... [ 70%] soma.singleton
highlighting module code... [ 73%] soma.somatime
highlighting module code... [ 76%] soma.sorted_dictionary
highlighting module code... [ 78%] soma.sqlite_tools
highlighting module code... [ 81%] soma.stringtools
highlighting module code... [ 84%] soma.thread_calls
highlighting module code... [ 86%] soma.translation
highlighting module code... [ 89%] soma.utils.find_library
highlighting module code... [ 92%] soma.utils.functiontools
highlighting module code... [ 95%] soma.utils.loader
highlighting module code... [ 97%] soma.utils.weak_proxy
highlighting module code... [100%] soma.uuid
writing additional pages... search done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 11 warnings.

The HTML pages are in ../../share/doc/soma-base-5.3/sphinx.
WARNING: Failed to import capsul.qt_apps.main_window.
Possible hints:
* ImportError: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py)
* AttributeError: module 'capsul.qt_apps' has no attribute 'main_window'
Qt offscreen does not work.
Cannot allocate an OpenGL context. Using Xvfb if possible.
using DISPLAY=:3
VirtualGL found.
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 1 warning.

The HTML pages are in ../../share/doc/axon-5.2/dev_doc.
/usr/lib/python3/dist-packages/sphinx_gallery/sphinx_compatibility.py:71: RemovedInSphinx80Warning: The alias 'sphinx.util.status_iterator' is deprecated, use 'sphinx.util.display.status_iterator' instead. Check CHANGES for Sphinx API modifications.
  status_iterator = sphinx.util.status_iterator
libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

libEGL warning: failed to open /dev/dri/card1: Permission denied

The XKEYBOARD keymap compiler (xkbcomp) reports:
&gt; Warning:          Could not resolve keysym XF86CameraAccessEnable
&gt; Warning:          Could not resolve keysym XF86CameraAccessDisable
&gt; Warning:          Could not resolve keysym XF86CameraAccessToggle
&gt; Warning:          Could not resolve keysym XF86NextElement
&gt; Warning:          Could not resolve keysym XF86PreviousElement
&gt; Warning:          Could not resolve keysym XF86AutopilotEngageToggle
&gt; Warning:          Could not resolve keysym XF86MarkWaypoint
&gt; Warning:          Could not resolve keysym XF86Sos
&gt; Warning:          Could not resolve keysym XF86NavChart
&gt; Warning:          Could not resolve keysym XF86FishingChart
&gt; Warning:          Could not resolve keysym XF86SingleRangeRadar
&gt; Warning:          Could not resolve keysym XF86DualRangeRadar
&gt; Warning:          Could not resolve keysym XF86RadarOverlay
&gt; Warning:          Could not resolve keysym XF86TraditionalSonar
&gt; Warning:          Could not resolve keysym XF86ClearvuSonar
&gt; Warning:          Could not resolve keysym XF86SidevuSonar
&gt; Warning:          Could not resolve keysym XF86NavInfo
Errors from xkbcomp are not fatal to the X server
WARNING: multiple files found for the document "auto_examples/activateaction": ['auto_examples/activateaction.ipynb', 'auto_examples/activateaction.rst', 'auto_examples/activateaction.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/activateaction.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/addMenuEntry": ['auto_examples/addMenuEntry.ipynb', 'auto_examples/addMenuEntry.rst', 'auto_examples/addMenuEntry.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/addMenuEntry.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/aimsvolumetest": ['auto_examples/aimsvolumetest.ipynb', 'auto_examples/aimsvolumetest.rst', 'auto_examples/aimsvolumetest.py.md5', 'auto_examples/aimsvolumetest.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/aimsvolumetest.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/anagraphannotate": ['auto_examples/anagraphannotate.ipynb', 'auto_examples/anagraphannotate.py', 'auto_examples/anagraphannotate.rst', 'auto_examples/anagraphannotate.py.md5']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/anagraphannotate.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/bvProcessSocket": ['auto_examples/bvProcessSocket.rst', 'auto_examples/bvProcessSocket.ipynb', 'auto_examples/bvProcessSocket.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/bvProcessSocket.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/control": ['auto_examples/control.ipynb', 'auto_examples/control.xpm', 'auto_examples/control.py', 'auto_examples/control.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/control.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/customcommands": ['auto_examples/customcommands.py', 'auto_examples/customcommands.ipynb', 'auto_examples/customcommands.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/customcommands.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/customopenglobject": ['auto_examples/customopenglobject.py.md5', 'auto_examples/customopenglobject.ipynb', 'auto_examples/customopenglobject.rst', 'auto_examples/customopenglobject.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/customopenglobject.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/ellipsoid": ['auto_examples/ellipsoid.rst', 'auto_examples/ellipsoid.py', 'auto_examples/ellipsoid.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/ellipsoid.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/events": ['auto_examples/events.rst', 'auto_examples/events.py', 'auto_examples/events.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/events.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/fusion": ['auto_examples/fusion.rst', 'auto_examples/fusion.py', 'auto_examples/fusion.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/fusion.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/fusion3D": ['auto_examples/fusion3D.py', 'auto_examples/fusion3D.ipynb', 'auto_examples/fusion3D.py.md5', 'auto_examples/fusion3D.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/fusion3D.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/graph": ['auto_examples/graph.ipynb', 'auto_examples/graph.py', 'auto_examples/graph.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/graph.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/graph_building": ['auto_examples/graph_building.ipynb', 'auto_examples/graph_building.py.md5', 'auto_examples/graph_building.py', 'auto_examples/graph_building.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/graph_building.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/meshtest": ['auto_examples/meshtest.py', 'auto_examples/meshtest.rst', 'auto_examples/meshtest.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/meshtest.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/nomenclatureselection": ['auto_examples/nomenclatureselection.py', 'auto_examples/nomenclatureselection.ipynb', 'auto_examples/nomenclatureselection.rst', 'auto_examples/nomenclatureselection.py.md5']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/nomenclatureselection.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/selection": ['auto_examples/selection.ipynb', 'auto_examples/selection.rst', 'auto_examples/selection.py.md5', 'auto_examples/selection.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/selection.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/sphere": ['auto_examples/sphere.py', 'auto_examples/sphere.ipynb', 'auto_examples/sphere.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/sphere.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/volumeMeasures": ['auto_examples/volumeMeasures.ipynb', 'auto_examples/volumeMeasures.rst', 'auto_examples/volumeMeasures.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/volumeMeasures.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/volumetest": ['auto_examples/volumetest.py.md5', 'auto_examples/volumetest.py', 'auto_examples/volumetest.rst', 'auto_examples/volumetest.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/volumetest.ipynb' for the build.
Qt offscreen does not work.
Cannot allocate an OpenGL context. Using Xvfb if possible.
using DISPLAY=:2
VirtualGL found.
global modules: /casa/host/build/share/anatomist-5.2/python_plugins
home   modules: /casa/home/.anatomist/python_plugins
loading module ana_image_math
loading module save_resampled
loading module modelGraphs
loading module volumepalettes
loading module valuesplotwindow
loading module gradientpalette
loading module histogram
loading module gltf_io
loading module foldsplit
loading module anacontrolmenu
loading module meshsplit
loading module paletteViewer
loading module simple_controls
loading module bundles_small_brains
loading module bundles_split_by_cortical_regions
loading module measure
loading module palettecontrols
loading module selection
loading module bsa_proba
loading module statsplotwindow
loading module profilewindow
loading module infowindow
all python modules loaded
Anatomist started.
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to &lt;class 'FileNotFoundError'&gt;: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv'
loading intersphinx inventory from <a href='https://docs.python.org/3.12/objects.inv'>https://docs.python.org/3.12/objects.inv</a>...
[100%] Built target soma-base-sphinx
[100%] Create "share/doc/5.3"
[100%] Built target soma-base-devdoc
[100%] Built target soma-base-doc
[autosummary] generating autosummary for: ana_notebook.ipynb, auto_examples/activateaction.ipynb, auto_examples/addMenuEntry.ipynb, auto_examples/aimsvolumetest.ipynb, auto_examples/anagraphannotate.ipynb, auto_examples/bvProcessSocket.ipynb, auto_examples/control.ipynb, auto_examples/customcommands.ipynb, auto_examples/customopenglobject.ipynb, auto_examples/ellipsoid.ipynb, ..., pyanatomist_examples.rst, pyanatomist_headless.rst, pyanatomist_howto.rst, pyanatomist_notebook.rst, pyanatomist_pyaims_tutorial.rst, pyanatomist_socket.rst, pyanatomist_threaded.rst, pyanatomist_tutorial.rst, pyanatomist_tutorial_nb.ipynb, pyanatomist_wip.rst
WARNING: Failed to import capsul.qt_apps.pipeline_viewer_app.
Possible hints:
* ImportError: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py)
* AttributeError: module 'capsul.qt_apps' has no attribute 'pipeline_viewer_app'
[autosummary] generating autosummary for: index.rst, pyaims_aimsalgo.rst, pyaims_aimsalgo_examples.rst, pyaims_algo.rst, pyaims_api_aims.rst, pyaims_api_aimsalgo.rst, pyaims_examples.rst, pyaims_examples_advanced.rst, pyaims_highlevel.rst, pyaims_lowlevel.rst, pyaims_modules_api.rst, pyaims_tutorial.rst, pyaims_tutorial_nb.ipynb, volume_orientation.ipynb
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 2 warnings.

The HTML pages are in ../../../../share/doc/pyaims-5.2/sphinx.
[100%] Built target axon-sphinx
[100%] Create "share/doc/5.2"
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 1 source files that are out of date
updating environment: 0 added, 2 changed, 0 removed
reading sources... [ 50%] api/qt_apps
[100%] Built target axon-devdoc
WARNING: Failed to import anatomist.socket.api.
Possible hints:
* AttributeError: module 'anatomist.socket' has no attribute 'api'
* ImportError: cannot import name 'qApp' from 'PyQt6.Qt' (/usr/lib/python3/dist-packages/PyQt6/QtGui.abi3.so)
WARNING: Failed to import anatomist.altas_viewer.
Possible hints:
* ModuleNotFoundError: No module named 'anatomist.altas_viewer'
* AttributeError: module 'anatomist' has no attribute 'altas_viewer'
generating gallery...
Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files.
generating gallery for auto_examples... [  4%] volumetest.py
generating gallery for auto_examples... [  9%] nomenclatureselection.py
generating gallery for auto_examples... [ 13%] graph.py
WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/graph.py failed to execute correctly: Traceback (most recent call last):
  File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/graph.py", line 50, in &lt;module&gt;
    if QtGui.qApp.startingUp():
       ^^^^^^^^^^
AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp'

generating gallery for auto_examples... [ 17%] customcommands.py
generating gallery for auto_examples... [ 22%] events.py
generating gallery for auto_examples... [ 26%] addMenuEntry.py
generating gallery for auto_examples... [ 30%] fusion3D.py
generating gallery for auto_examples... [ 35%] selection.py
generating gallery for auto_examples... [ 39%] activateaction.py
generating gallery for auto_examples... [ 43%] graph_building.py
generating gallery for auto_examples... [ 48%] bvProcessSocket.py
reading sources... [100%] tutorial/capsul_tutorial
generating gallery for auto_examples... [ 52%] aimsvolumetest.py
generating gallery for auto_examples... [ 57%] meshtest.py
WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/meshtest.py failed to execute correctly: Traceback (most recent call last):
  File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/meshtest.py", line 46, in &lt;module&gt;
    from soma.qt_gui.qt_backend.QtGui import qApp
ImportError: cannot import name 'qApp' from 'PyQt6.QtGui' (/usr/lib/python3/dist-packages/PyQt6/QtGui.abi3.so)

generating gallery for auto_examples... [ 61%] sphere.py
generating gallery for auto_examples... [ 65%] fusion.py
generating gallery for auto_examples... [ 70%] ellipsoid.py
QOpenGLWidget is not supported on this platform.
QOpenGLWidget is not supported on this platform.
This plugin does not support propagateSizeHints()
This plugin does not support raise()
WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/ellipsoid.py failed to execute correctly: Traceback (most recent call last):
  File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/ellipsoid.py", line 135, in &lt;module&gt;
    QtGui.qApp.processEvents()
    ^^^^^^^^^^
AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp'

generating gallery for auto_examples... [ 74%] control.py
WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/control.py failed to execute correctly: Traceback (most recent call last):
  File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/control.py", line 56, in &lt;module&gt;
    if QtGui.qApp.startingUp() and 'IPython' not in sys.modules:
       ^^^^^^^^^^
AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp'

generating gallery for auto_examples... [ 78%] anagraphannotate.py
generating gallery for auto_examples... [ 83%] customopenglobject.py
generating gallery for auto_examples... [ 87%] volumeMeasures.py
generating gallery for auto_examples... [ 91%] anaevensimplerviewer.py
This plugin does not support propagateSizeHints()
QOpenGLWidget is not supported on this platform.
QOpenGLWidget is not supported on this platform.
QOpenGLWidget is not supported on this platform.
QOpenGLWidget is not supported on this platform.
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
PyAnatomist Module present
PythonLauncher::runModules()
Multitexturing present
function glActiveTexture found.
function glClientActiveTexture found.
function glBlendEquation found.
function glTexImage3D found.
function glMultiTexCoord3f found.
function glBindFramebuffer found.
function glBindRenderbuffer found.
function glFramebufferTexture2D found.
function glGenFramebuffers found.
function glGenRenderbuffers found.
function glFramebufferRenderbuffer found.
function glRenderbufferStorage found.
function glCheckFramebufferStatus found.
function glDeleteRenderbuffers found.
function glDeleteFramebuffers found.
Number of texture units: 8
function glUniform1f found.
function glUniform1i found.
function glUniform4fv found.
function glGetUniformLocation found.
function glMultTransposeMatrixf found.
function glAttachShader found.
function glDetachShader found.
function glCompileShader found.
function glCreateProgram found.
function glCreateShader found.
function glDeleteProgram found.
function glDeleteShader found.
function glGetProgramiv found.
function glGetShaderiv found.
function glLinkProgram found.
function glShaderSource found.
function glUseProgram found.
GL_ARB_shadow present
GL_SGIX_shadow extension not available
GL_SGIX_depth_texture extension not available
GL_ARB_depth_texture extension present
GL_ARB_texture_cube_map extension present
GL_EXT_texture_cube_map extension present
Number of texture units: 8
QPainter::begin: Paint device returned engine == 0, type: 1
QPainter::setRenderHint: Painter must be active to set rendering hints
QPainter::setRenderHint: Painter must be active to set rendering hints
QPainter::worldTransform: Painter not active
QPainter::save: Painter not active
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:00,220::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'.
Segmentation fault (core dumped)
[100%] Built target anatomist-gpl-sphinx
[100%] Create "share/doc/5.2"
Process2 execution, a: 0.000000, b: blop
[100%] Built target anatomist-gpl-devdoc
[100%] Built target anatomist-gpl-doc
Process2 execution, a: 0.000000, b: yup
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:01,165::INFO::Pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:01,244::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:01,343::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:01,436::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:01,462::INFO::Pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.png'.
Process2 execution, a: 0.000000, b: blop
[100%] Built target aims-free-sphinx
[100%] Create "share/doc/5.2"
[100%] Built target aims-free-devdoc
[100%] Built target aims-free-doc
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:06,935::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,099::INFO::Pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.brainorientation.BrainOrientation.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,199::INFO::Pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,279::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,373::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,383::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,489::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,563::INFO::Pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.brainorientation.BrainOrientation.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,635::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,717::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,749::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,749::INFO::Summary: '14' files written for module 'capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,862::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:07,959::INFO::Pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:08,084::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:08,188::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,301::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,302::INFO::Found '3' process(es) in 'deepsulci.sulci_labeling.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,302::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,303::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,304::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.training.SulciDeepTraining'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,305::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,306::INFO::process: '3' files written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,306::INFO::Writing module 'sulci_labeling' index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,306::INFO::Index: an index has been written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:08,314::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:08,314::INFO::Summary: '14' files written for module 'capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,668::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,668::INFO::Found '40' process(es) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:08,668::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:09,326::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:09,326::INFO::Found '40' process(es) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:09,326::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:13,330::ERROR::Traceback (most recent call last):
  File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
    __import__(sub_sub_module_name)
  File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in &lt;module&gt;
    from ..method.svm import SVMPatternClassification
  File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in &lt;module&gt;
    import pcl
ModuleNotFoundError: No module named 'pcl'

/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:13,330::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:13,331::ERROR::Traceback (most recent call last):
  File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
    __import__(sub_sub_module_name)
  File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in &lt;module&gt;
    from ..method.svm import SVMPatternClassification
  File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in &lt;module&gt;
    import pcl
ModuleNotFoundError: No module named 'pcl'

/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:13,331::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-07-27 06:14:13,517::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,610::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,618::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,704::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,716::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,771::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,841::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,855::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,887::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,904::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,916::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:13,926::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,211::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,219::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,296::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,307::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,360::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,429::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,444::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,476::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,492::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,505::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,515::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,810::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,826::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,840::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,841::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,841::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,842::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,843::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,844::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,845::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,846::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,847::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,848::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,849::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,850::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,851::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,852::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,853::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,858::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,859::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,860::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,861::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,862::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,863::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,864::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,865::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,866::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,867::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,867::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,869::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,869::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,871::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,871::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,872::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,873::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,875::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,876::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,876::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,878::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,879::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,880::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,881::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,886::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,887::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,888::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,889::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,890::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,890::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:14,890::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,399::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,417::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,431::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,431::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,431::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,433::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,434::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,434::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,436::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,437::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,438::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,439::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,439::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,440::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,441::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,442::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,443::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,448::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,449::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,450::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,451::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,452::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,453::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,454::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,455::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,456::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,457::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,458::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,459::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,460::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,461::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,462::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,463::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,464::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,465::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,466::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,467::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,468::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,469::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,470::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,471::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,476::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,477::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,478::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,479::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,480::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,480::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:15,480::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul.
WARNING: impossible to use version 2 of sip/Qt API.
generating CAPSUL processes docs...
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist', '--schema']
loading pickled environment... done
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to &lt;class 'FileNotFoundError'&gt;: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv'
[autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst
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/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,352::ERROR::Traceback (most recent call last):
  File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
    __import__(sub_sub_module_name)
  File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in &lt;module&gt;
    from ..method.svm import SVMPatternClassification
  File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in &lt;module&gt;
    import pcl
ModuleNotFoundError: No module named 'pcl'

/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,352::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,353::ERROR::Traceback (most recent call last):
  File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
    __import__(sub_sub_module_name)
  File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in &lt;module&gt;
    from ..method.svm import SVMPatternClassification
  File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in &lt;module&gt;
    import pcl
ModuleNotFoundError: No module named 'pcl'

/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,353::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,555::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,555::INFO::Found '4' process(es) in 'deepsulci.pattern_classification.capsul'.

/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,555::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'...
generating indices... genindex /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,556::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,557::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,558::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-07-27 06:14:19,559::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/index.rst'...
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['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.sulci_labeling.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci', '--schema']
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.pattern_classification.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci', '--schema']
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[autosummary] generating autosummary for: api.rst, index.rst, process_docs/deepsulci/pattern_classification/index.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.svm_labeling.PatternSVMLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.svm_training.PatternSVMTraining.rst, process_docs/deepsulci/pattern_classification/process/index.rst, process_docs/deepsulci/sulci_labeling/index.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst, process_docs/deepsulci/sulci_labeling/process/index.rst
WARNING: Failed to import deepsulci.pattern_classification.method.svm.
Possible hints:
* ModuleNotFoundError: No module named 'pcl'
* AttributeError: module 'deepsulci.pattern_classification.method' has no attribute 'svm'
pcl.registration missing !
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WARNING: autodoc: failed to import module 'svm' from module 'deepsulci.pattern_classification.method'; the following exception was raised:
No module named 'pcl'
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] No such file or directory: '../../../src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/pipeline/index.rst'.
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst:21: WARNING: duplicate label pipelines, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst:26: WARNING: duplicate label buildingblocks, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:11: WARNING: duplicate label deepsulci.pattern_classification.capsul.resnet_labeling.patterndeeplabeling, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:32: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:47: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:11: WARNING: duplicate label deepsulci.pattern_classification.capsul.resnet_training.patterndeeptraining, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:56: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:84: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:11: WARNING: duplicate label deepsulci.pattern_classification.capsul.snipe_labeling.patternsnipelabeling, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:33: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:53: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:11: WARNING: duplicate label deepsulci.pattern_classification.capsul.snipe_training.patternsnipetraining, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:50: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:74: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:23: CRITICAL: Problems with "include" directive path:
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/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:21: WARNING: duplicate label pipelines, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst
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generating indices... genindex py-modindex done
/usr/lib/python3/dist-packages/nbsphinx.py:2094: RemovedInSphinx80Warning: The alias 'sphinx.util.status_iterator' is deprecated, use 'sphinx.util.display.status_iterator' instead. Check CHANGES for Sphinx API modifications.
  status_iterator = sphinx.util.status_iterator
copying linked files... 
copying notebooks ... [100%] tutorial/capsul_tutorial.ipynb
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writing additional pages... search done
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 7 warnings.

The HTML pages are in ../../share/doc/capsul-2.6.
[100%] Built target capsul-sphinx
[100%] Create "share/doc/2.6"
[100%] Built target capsul-devdoc
[100%] Built target devdoc
[100%] Built target capsul-doc
/casa/host/src/axon/master/scripts/brainvisa/bv_create_doc_index:67: SyntaxWarning: invalid escape sequence '\.'
  ignored = [re.compile("CMakeLists\.txt")]
[100%] Built target bv_doc_index
[100%] Built target axon-doc
[100%] Built target doc

bv_maker summary:
OK          step doc: /casa/host/build, started: 2025/07/27 06:13, stopped: 2025/07/27 06:14
All went good.

Finished: SUCCESS