Console Output

Started
Running as brainvisa
================================================================================
----------------------------------------
$ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi-nightly/brainvisa-master-5.3/src/development/casa-distro/master/bin/casa_distro run name=brainvisa-5.1-5.3-userimage env=BRAINVISA_TEST_RUN_DATA_DIR=/volatile/a-sac-ns-brainvisa/bbi-nightly/brainvisa-5.1-5.3-userimage/tests/test,BRAINVISA_TEST_REF_DATA_DIR=/volatile/a-sac-ns-brainvisa/bbi-nightly/brainvisa-5.1-5.3-userimage/tests/ref -- sh -c '/casa/install/bin/bv_env_test "timeout" "-k" "10" "1800" "python3" "-m" "brainvisa.tests.test_registration"'
----------------------------------------
/casa/install/python/soma/minf/xml_writer.py:101: ResourceWarning: unclosed file <_io.TextIOWrapper name='/casa/home/.brainvisa/current_runs.minf' mode='w' encoding='UTF-8'>
  self.__file = None
ResourceWarning: Enable tracemalloc to get the object allocation traceback
Loading toolbox brainrat
Loading toolbox cortical_surface
Loading toolbox data management
Loading toolbox freesurfer
Loading toolbox highres_cortex
Loading toolbox morphologist
Loading toolbox primatologist
Loading toolbox spm
Loading toolbox structural_analysis
Loading toolbox tools
Loading toolbox viewers
Loading toolbox My processes
The log file for this session is '/casa/home/.brainvisa/brainvisa19.log'

/casa/install/python/soma/sqlite_tools.py:119: DeprecationWarning: getName() is deprecated, get the name attribute instead
  currentThread = threading.current_thread().getName()
/casa/install/python/soma/qt_gui/qt_backend.py:404: ImportWarning: __package__ != __spec__.parent
  from . import QtCore
/casa/install/python/soma/qt_gui/qt_backend.py:419: ImportWarning: __package__ != __spec__.parent
  from . import QtCore
<frozen importlib._bootstrap>:914: ImportWarning: QtImporter.find_spec() not found; falling back to find_module()
<frozen importlib._bootstrap>:671: ImportWarning: QtImporter.exec_module() not found; falling back to load_module()
<frozen importlib._bootstrap>:914: ImportWarning: QtImporter.find_spec() not found; falling back to find_module()
<frozen importlib._bootstrap>:914: ImportWarning: QtImporter.find_spec() not found; falling back to find_module()
<frozen importlib._bootstrap>:914: ImportWarning: QtImporter.find_spec() not found; falling back to find_module()
<frozen importlib._bootstrap>:914: ImportWarning: QtImporter.find_spec() not found; falling back to find_module()
<frozen importlib._bootstrap>:914: ImportWarning: QtImporter.find_spec() not found; falling back to find_module()
<frozen importlib._bootstrap>:914: ImportWarning: QtImporter.find_spec() not found; falling back to find_module()
<frozen importlib._bootstrap>:914: ImportWarning: QtImporter.find_spec() not found; falling back to find_module()
/casa/install/python/soma/sqlite_tools.py:119: DeprecationWarning: getName() is deprecated, get the name attribute instead
  currentThread = threading.current_thread().getName()
exec: /casa/install/brainvisa/toolboxes/morphologist/startup.py
SPM dir: /usr/local/spm12-standalone
spmtemplates: /usr/local/spm12-standalone/spm12_mcr/spm12/spm12
/usr/local/spm12-standalone/spm12_mcr/spm12/spm12: parse directories and
insert items

/usr/local/spm12-standalone/spm12_mcr/spm12/spm12: 8 files are stored as 8
DiskItems in 0 seconds

/volatile/a-sac-ns-brainvisa/bbi-
nightly/brainvisa-5.1-5.3-userimage/tests/test/tmp_tests_brainvisa/database_registration/database:
parse directories and insert items

/volatile/a-sac-ns-brainvisa/bbi-
nightly/brainvisa-5.1-5.3-userimage/tests/test/tmp_tests_brainvisa/database_registration/database:
0 files are stored as 0 DiskItems in 0 seconds

/casa/install/python/soma/sqlite_tools.py:148: DeprecationWarning: getName() is deprecated, get the name attribute instead
  currentThread = threading.current_thread().getName()
/casa/install/python/soma/sqlite_tools.py:180: DeprecationWarning: getName() is deprecated, get the name attribute instead
  currentThread = threading.current_thread().getName()
Generating database tables for /volatile/a-sac-ns-brainvisa/bbi-
nightly/brainvisa-5.1-5.3-userimage/tests/test/tmp_tests_brainvisa/database_registration/database

/volatile/a-sac-ns-brainvisa/bbi-
nightly/brainvisa-5.1-5.3-userimage/tests/test/tmp_tests_brainvisa/database_registration/database:
parse directories and insert items

/volatile/a-sac-ns-brainvisa/bbi-
nightly/brainvisa-5.1-5.3-userimage/tests/test/tmp_tests_brainvisa/database_registration/database:
323 files are stored as 323 DiskItems in 0 seconds

/casa/install/python/brainvisa/tests/test_registration.py:119: DeprecationWarning: Please use assertEqual instead.
  self.assertEquals(len(paths), 65)
/casa/install/python/soma/minf/xml_writer.py:101: ResourceWarning: unclosed file <_io.TextIOWrapper name='/casa/home/.brainvisa/current_runs.minf' mode='w' encoding='UTF-8'>
  self.__file = None
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/casa/install/python/brainvisa/processing/neuroLog.py:349: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/bv_6resv7l1' mode='w' encoding='utf-8'>
  self._file = None
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/casa/install/python/brainvisa/processing/neuroLog.py:349: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/bv_xjrlhqh9' mode='w' encoding='utf-8'>
  self._file = None
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/casa/install/python/brainvisa/processing/neuroLog.py:349: ResourceWarning: unclosed file <_io.TextIOWrapper name='/casa/home/.brainvisa/brainvisa19.log' mode='w' encoding='utf-8'>
  self._file = None
ResourceWarning: Enable tracemalloc to get the object allocation traceback
.
----------------------------------------------------------------------
Ran 1 test in 19.607s

OK
/usr/lib/python3.10/subprocess.py:1072: ResourceWarning: subprocess 289599 is still running

================================================================================
SUCCESS (exit code 0)
Finished: SUCCESS