Started
Running as brainvisa
----------------------------------------
$ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=brainvisa-sf-6.0 -- configure
----------------------------------------
Obtaining file:///home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/populse-db
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Checking if build backend supports build_editable: started
Checking if build backend supports build_editable: finished with status 'done'
Getting requirements to build editable: started
Getting requirements to build editable: finished with status 'done'
Preparing editable metadata (pyproject.toml): started
Preparing editable metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: populse-db
Building editable for populse-db (pyproject.toml): started
Building editable for populse-db (pyproject.toml): finished with status 'done'
Created wheel for populse-db: filename=populse_db-3.0.7-0.editable-py3-none-any.whl size=10514 sha256=2e5774d86c8b0a1ba8b576b89ee4c5ee08ea4ff13217e359a9f343f810c0bde5
Stored in directory: /home_local/a-sac-ns-brainvisa/tmp/pip-ephem-wheel-cache-bnqma0ld/wheels/2f/c5/c9/cd61bf49bb117c70772fef2c5fc2b02b234bcd0f496b13f8cc
Successfully built populse-db
Installing collected packages: populse-db
Successfully installed populse-db-3.0.7
$ cmake -DPIXI=/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0 -DCMAKE_BUILD_TYPE:STRING=Release /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build
Using Pixi environment located in /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0
-- Use specific CMake code for Linux
-- Configuring component brainvisa-cmake from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-cmake"
-- Configuring component brainvisa-share from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-share"
-- Found PythonInterp: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11 (Required is at least version "2")
-- Configuring component soma-base from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-base"
CMake Deprecation Warning at /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-base/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Configuring component soma-io from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-io"
-- Checking for one of the modules 'openslide'
-- Configuring component soma-workflow from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/soma-workflow"
-- LibDRMAA was not found.
-- Configuring component capsul from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/build_files/capsul_src"
-- Configuring component populse-db from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/build_files/populse-db_src"
-- Configuring component aims-free from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free"
-- Checking for one of the modules 'openslide'
-- Found PythonInterp: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11
CMake Deprecation Warning at /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free/aimsgui/src/CiftiLib-1.5.1/CMakeLists.txt:7 (CMAKE_POLICY):
The OLD behavior for policy CMP0045 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
RUN MAKETEMPLATES: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/python3.11;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/aims-5.2/sip/maketemplates.py;-i;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free/pyaims/src/sip/generatedtypes.py;-p;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free/pyaims/src/sip;-o;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build/share/aims-5.2/sip;-t;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-free/pyaims/src/sip/typessub.py;-l;-m;/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/.pixi/envs/default/bin/moc;-P;cpp -C;-D;SIP_MODULE="PyQt5.sip";-D;SIP_ABI_MAJOR_VERSION=12
-- Configuring component aims-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-gpl"
-- Checking for one of the modules 'openslide'
CMake Warning (dev) at /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/aims-gpl/pyaimsgui/src/sip_gui/CMakeLists.txt:27 (exec_program):
Policy CMP0153 is not set: The exec_program command should not be called.
Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Use execute_process() instead.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring component anatomist-free from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-free"
-- Checking for one of the modules 'openslide'
VTK5 and Qt5+ are not supported. The VTK plugin is disabled.
WARNING: anatomist modules anavtk will not be build because VTK or vtkINRIA3D library has not been found
-- Configuring component anatomist-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl"
-- Checking for one of the modules 'openslide'
-- Checking for one of the modules 'openslide'
CMake Warning (dev) at /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/anatomist-gpl/pyanatomist/src/sip/CMakeLists.txt:24 (exec_program):
Policy CMP0153 is not set: The exec_program command should not be called.
Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Use execute_process() instead.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring component axon from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/axon"
-- Checking for one of the modules 'openslide'
SIP VERSION: 6.7.12
-- Configuring component brainvisa-spm from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa-spm"
-- Configuring component highres-cortex from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/highres-cortex"
-- Checking for one of the modules 'openslide'
-- Found OpenMP: TRUE (found version "4.5")
-- Configuring component morphologist-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-nonfree"
-- Checking for one of the modules 'openslide'
-- Checking for one of the modules 'openslide'
-- Configuring component morphologist-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-gpl"
-- Checking for one of the modules 'openslide'
-- Configuring component morphologist-baby from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-baby"
-- Checking for one of the modules 'openslide'
-- Checking for one of the modules 'openslide'
-- Configuring component sulci-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/sulci-nonfree"
-- Checking for one of the modules 'openslide'
-- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR)
-- Checking for one of the modules 'openslide'
-- Configuring component morphologist-ui from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morphologist-ui"
-- Checking for one of the modules 'openslide'
-- Checking for one of the modules 'openslide'
-- Configuring component morpho-deepsulci from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/morpho-deepsulci"
-- Checking for one of the modules 'openslide'
-- Checking for one of the modules 'openslide'
-- Configuring component brainrat-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainrat-gpl"
-- Checking for one of the modules 'openslide'
-- Configuring component brainrat-private from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainrat-private"
-- Checking for one of the modules 'openslide'
-- Configuring component bioprocessing from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/bioprocessing"
-- Found OpenMP: TRUE (found version "4.5")
-- Checking for one of the modules 'openslide'
-- Configuring component primatologist-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/primatologist-gpl"
-- Checking for one of the modules 'openslide'
-- Configuring component constellation-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/constellation-gpl"
-- Configuring component constellation-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/constellation-nonfree"
-- Checking for one of the modules 'openslide'
-- Checking for one of the modules 'openslide'
-- Configuring component cortical_surface-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/cortical_surface-nonfree"
-- Checking for one of the modules 'openslide'
-- Configuring component cortical_surface-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/cortical_surface-gpl"
-- Configuring component brainvisa_freesurfer from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/brainvisa_freesurfer"
-- Configuring component nuclear_imaging-gpl from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/nuclear_imaging-gpl"
-- Configuring component nuclear_imaging-nonfree from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/nuclear_imaging-nonfree"
-- Checking for one of the modules 'openslide'
-- Configuring component disco from source directory "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/src/disco"
-- Checking for one of the modules 'openslide'
-- Checking for one of the modules 'openslide'
-- Checking for one of the modules 'openslide'
-- Configuring done (13.3s)
-- Generating done (3.1s)
-- Build files have been written to: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build
bv_maker summary:
OK step configure: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-sf-6.0/build, started: 2025/06/30 03:47, stopped: 2025/06/30 03:47
All went good.
Finished: SUCCESS
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