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component 270 : 1 points
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component 167 : 1 points
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component 165 : 1 points
component 162 : 1 points
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component 153 : 1 points
component 150 : 1 points
component 144 : 1 points
component 142 : 1 points
component 140 : 1 points
component 139 : 1 points
component 135 : 1 points
component 134 : 1 points
component 133 : 1 points
component 132 : 1 points
component 128 : 1 points
component 127 : 1 points
component 125 : 1 points
component 107 : 1 points
component 64 : 1 points
component 53 : 1 points
component 1 : 1 points
filtering...
after filtering: 21643 components
yl::IterativeRegionMerger::merge_worst_regions_iteratively:
computing initial region qualities...
21643 regions will be processed.
filling in neighbourhoods...
iteratively merging regions...
Phase 1: processing non-traversing regions
Phase 2: all regions are traversing, merging until goal diameter
end: 692 regions.
heat/heat.nii.gz: RMS error = 2.1%, bias = -0.5% (RMS error <= 0.021)
isovolume/equivolumic_depth.nii.gz: RMS error = 1.8%, bias = -0.3% (RMS error <= 0.02)
laplace-euclidean/pial-fraction.nii.gz: RMS error = 1.6%, bias = -0.1% (RMS error <= 0.017)
laplace-euclidean/total-length.nii.gz: RMS error = 0.124 mm, bias = -0.096 mm (RMS error <= 0.15)
upwind-euclidean/pial-fraction.nii.gz: RMS error = 2.3%, bias = -0.1% (RMS error <= 0.023)
upwind-euclidean/total-length.nii.gz: RMS error = 0.184 mm, bias = 0.176 mm (RMS error <= 0.19)
================================================================================
SUCCESS (exit code 0)
================================================================================
----------------------------------------
$ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin/casa_distro run name=cea-5.1-5.3-userimage env=BRAINVISA_TEST_RUN_DATA_DIR=/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3-userimage/tests/test,BRAINVISA_TEST_REF_DATA_DIR=/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3-userimage/tests/ref -- sh -c '/casa/install/bin/bv_env_test "timeout" "-k" "10" "1800" "python3" "-m" "highres_cortex.test.test_capsul"'
----------------------------------------
ylAdvectEuclidean: reading field...
ylAdvectEuclidean: reading domain volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 521 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 2657 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 5240 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 6212 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 6214 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 6216 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 6216 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 6385 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 6909 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 7037 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 7715 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 8003 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 8657 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 8765 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 9130 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 9293 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 9519 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 9528 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 9563 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 9578 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 9578 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 9580 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9605 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9613 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9621 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9627 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9653 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9664 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
.ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
ylIsoCurvature: reading input...
10 / 29 slices processed.
10 / 29 slices processed.
10 / 29 slices processed.
10 / 29 slices processed.
26 / 29 slices processed.
27 / 29 slices processed.
27 / 29 slices processed.
28 / 29 slices processed.
28 / 29 slices processed.
28 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
ylIsoCurvature: writing output...
ylAdvectTubes: reading field...
ylAdvectTubes: reading domain volume...
ylAdvectTubes: reading divergence volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 641 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 2838 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 5366 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 6360 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 6362 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 6367 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 6382 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 6561 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 6756 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 6994 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 7399 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 8301 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 9083 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 9160 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 9274 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 9278 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 9330 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 9366 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 9422 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 9448 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 9502 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 9516 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9598 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9623 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9626 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9655 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9663 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9671 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
ylAdvectTubes: reading field...
ylAdvectTubes: reading domain volume...
ylAdvectTubes: reading divergence volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 408 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 1267 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 2042 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 2183 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 2189 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 2192 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 2443 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 2574 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 3187 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 4104 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 4301 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 4833 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 5597 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 5971 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 6943 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 7340 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 7717 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 7803 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 8344 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 8432 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 8436 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 8978 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9076 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9285 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9449 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9525 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9596 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9638 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
output type: Volume_FLOAT
output type: Volume_FLOAT
.ylIsoCurvature: reading input...
6 / 29 slices processed.
12 / 29 slices processed.
12 / 29 slices processed.
12 / 29 slices processed.
14 / 29 slices processed.
17 / 29 slices processed.
27 / 29 slices processed.
27 / 29 slices processed.
27 / 29 slices processed.
27 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
ylIsoCurvature: writing output...
.ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
.ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
ylAdvectEuclidean: reading field...
ylAdvectEuclidean: reading domain volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 416 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 1361 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 2176 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 2325 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 2325 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 2325 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 2599 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 2669 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 3614 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 3620 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 4496 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 4980 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 5438 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 5923 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 6669 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 7017 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 7824 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 7880 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 8039 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 8798 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 8814 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 8921 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9175 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9351 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9424 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9591 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9633 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9636 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
ylAdvectEuclidean: reading field...
ylAdvectEuclidean: reading domain volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 548 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 2705 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 5557 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 6253 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 6255 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 6255 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 6425 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 6529 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 6860 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 7039 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 7790 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 8102 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 8895 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 9043 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 9332 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 9409 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 9420 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 9453 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 9507 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 9521 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 9575 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 9599 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9619 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9640 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9650 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9655 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9662 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9668 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
output type: Volume_FLOAT
output type: Volume_FLOAT
.ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
ylUpwindDistance: reading field...
ylUpwindDistance: reading domain volume...
ylUpwindDistance: computing upwind distance...
initializing front...
upwinding...
finished after 9672 iterations (0 NaN results).
ylUpwindDistance: writing output...
ylUpwindDistance: reading field...
ylUpwindDistance: reading domain volume...
ylUpwindDistance: computing upwind distance...
initializing front...
upwinding...
finished after 9672 iterations (0 NaN results).
ylUpwindDistance: writing output...
output type: Volume_FLOAT
output type: Volume_FLOAT
.filein : /tmp/tmpa3xncxb8capsul.nii.gz
fileout : /tmp/tmpr4al6puncapsul.nii.gz
encoding: Binary
normal : 0
rescale : 0
format :
type : S32
objtype :
xdim : 0
ydim : 0
zdim : 0
imin : default
imax : default
omin : default
omax : default
reading /tmp/tmpa3xncxb8capsul.nii.gz as Volume / S16...
reading done
convert to Volume / S32
converting data...
convert done
writing /tmp/tmpr4al6puncapsul.nii.gz...
done
FastMarching...
initializing speed map
work voxels: 9672, interface voxels: 90
iter: 0, front size: 90, point: (14, 14, 12), dist: 0
FastMarching...
initializing speed map
work voxels: 81, interface voxels: 90
iter: 0, front size: 90, point: (14, 14, 12), dist: 0
FastMarching...
initializing speed map
work voxels: 9672, interface voxels: 1934
iter: 0, front size: 1934, point: (13, 13, 1), dist: 0
iter: 10000, front size: 530, point: (21, 13, 11), dist: 1.75855
FastMarching...
initializing speed map
work voxels: 18014, interface voxels: 1934
iter: 0, front size: 1934, point: (13, 13, 1), dist: 0
iter: 10000, front size: 1856, point: (0, 15, 23), dist: 0.985738
ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
ylPropagateAlongField: reading field...
ylPropagateAlongField: reading seeds...
yl::PropagateAlongField::propagate_regions:
maximum propagation distance: 6 mm.
1 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
2 / 31 slices processed. 501 voxels propagated, 21 dead-end, 22 lost...
3 / 31 slices processed. 1148 voxels propagated, 43 dead-end, 22 lost...
4 / 31 slices processed. 1267 voxels propagated, 48 dead-end, 22 lost...
5 / 31 slices processed. 1407 voxels propagated, 49 dead-end, 22 lost...
6 / 31 slices processed. 1476 voxels propagated, 52 dead-end, 22 lost...
7 / 31 slices processed. 1483 voxels propagated, 52 dead-end, 22 lost...
8 / 31 slices processed. 1484 voxels propagated, 52 dead-end, 22 lost...
9 / 31 slices processed. 1509 voxels propagated, 52 dead-end, 22 lost...
10 / 31 slices processed. 1520 voxels propagated, 52 dead-end, 22 lost...
11 / 31 slices processed. 1522 voxels propagated, 52 dead-end, 22 lost...
12 / 31 slices processed. 1540 voxels propagated, 52 dead-end, 22 lost...
13 / 31 slices processed. 1546 voxels propagated, 52 dead-end, 22 lost...
14 / 31 slices processed. 1584 voxels propagated, 52 dead-end, 22 lost...
15 / 31 slices processed. 1602 voxels propagated, 52 dead-end, 22 lost...
16 / 31 slices processed. 1604 voxels propagated, 52 dead-end, 22 lost...
17 / 31 slices processed. 1608 voxels propagated, 52 dead-end, 22 lost...
18 / 31 slices processed. 1642 voxels propagated, 52 dead-end, 22 lost...
19 / 31 slices processed. 1658 voxels propagated, 52 dead-end, 22 lost...
20 / 31 slices processed. 1684 voxels propagated, 52 dead-end, 22 lost...
21 / 31 slices processed. 1691 voxels propagated, 52 dead-end, 22 lost...
22 / 31 slices processed. 1693 voxels propagated, 52 dead-end, 22 lost...
23 / 31 slices processed. 1695 voxels propagated, 52 dead-end, 22 lost...
24 / 31 slices processed. 1700 voxels propagated, 52 dead-end, 22 lost...
25 / 31 slices processed. 1702 voxels propagated, 53 dead-end, 22 lost...
26 / 31 slices processed. 1703 voxels propagated, 53 dead-end, 22 lost...
27 / 31 slices processed. 1710 voxels propagated, 54 dead-end, 22 lost...
28 / 31 slices processed. 1756 voxels propagated, 56 dead-end, 22 lost...
29 / 31 slices processed. 1822 voxels propagated, 56 dead-end, 22 lost...
30 / 31 slices processed. 1852 voxels propagated, 56 dead-end, 22 lost...
31 / 31 slices processed. 1856 voxels propagated, 56 dead-end, 22 lost...
yl::PropagateAlongField::propagate_regions: 1856 propagated, 56 dead-end, 22 lost.
ylPropagateAlongField: writing output regions /tmp/tmp4jdo91q5capsul.nii.gz as Volume of S32...
ylPropagateAlongField: reading field...
ylPropagateAlongField: reading seeds...
yl::PropagateAlongField::propagate_regions:
maximum propagation distance: 6 mm.
13 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
18 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
18 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
19 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
21 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
21 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
22 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
25 / 31 slices processed. 33 voxels propagated, 7 dead-end, 0 lost...
26 / 31 slices processed. 57 voxels propagated, 7 dead-end, 0 lost...
27 / 31 slices processed. 69 voxels propagated, 9 dead-end, 0 lost...
28 / 31 slices processed. 71 voxels propagated, 9 dead-end, 0 lost...
29 / 31 slices processed. 76 voxels propagated, 9 dead-end, 0 lost...
30 / 31 slices processed. 78 voxels propagated, 9 dead-end, 0 lost...
31 / 31 slices processed. 80 voxels propagated, 10 dead-end, 0 lost...
yl::PropagateAlongField::propagate_regions: 80 propagated, 10 dead-end, 0 lost.
ylPropagateAlongField: writing output regions /tmp/tmpxya6g1pccapsul.nii.gz as Volume of S32...
input file: raw_exchanged_labels.nii is processed as Volume / S32
output file: connected_exchanged_labels.nii is processed as Volume / S32 (data type kept)
minsize: 0, maxsize: 0, nummax: 0
z: 0
z: 1
z: 2
z: 3
z: 4
z: 5
z: 6
z: 7
z: 8
z: 9
z: 10
z: 11
z: 12
z: 13
z: 14
z: 15
z: 16
z: 17
z: 18
z: 19
z: 20
z: 21
z: 22
z: 23
z: 24
z: 25
z: 26
z: 27
z: 28
z: 29
z: 30
236 components
component 1 : 18014 points
component 80 : 81 points
component 230 : 31 points
component 229 : 31 points
component 224 : 31 points
component 223 : 31 points
component 181 : 31 points
component 180 : 31 points
component 159 : 31 points
component 54 : 31 points
component 53 : 31 points
component 38 : 31 points
component 11 : 31 points
component 10 : 31 points
component 6 : 31 points
component 177 : 30 points
component 176 : 30 points
component 163 : 30 points
component 162 : 30 points
component 48 : 30 points
component 47 : 30 points
component 44 : 30 points
component 43 : 30 points
component 7 : 30 points
component 158 : 27 points
component 37 : 27 points
component 235 : 25 points
component 89 : 25 points
component 78 : 25 points
component 74 : 25 points
component 3 : 24 points
component 217 : 22 points
component 204 : 22 points
component 29 : 22 points
component 16 : 22 points
component 218 : 20 points
component 214 : 20 points
component 213 : 20 points
component 208 : 20 points
component 207 : 20 points
component 179 : 20 points
component 178 : 20 points
component 161 : 20 points
component 160 : 20 points
component 73 : 20 points
component 52 : 20 points
component 51 : 20 points
component 40 : 20 points
component 39 : 20 points
component 27 : 20 points
component 26 : 20 points
component 25 : 20 points
component 18 : 20 points
component 17 : 20 points
component 203 : 18 points
component 14 : 18 points
component 234 : 17 points
component 231 : 17 points
component 195 : 17 points
component 55 : 17 points
component 12 : 17 points
component 183 : 16 points
component 36 : 16 points
component 5 : 16 points
component 233 : 15 points
component 232 : 15 points
component 188 : 15 points
component 184 : 15 points
component 121 : 15 points
component 120 : 15 points
component 115 : 15 points
component 111 : 15 points
component 97 : 15 points
component 96 : 15 points
component 91 : 15 points
component 90 : 15 points
component 46 : 15 points
component 45 : 15 points
component 9 : 15 points
component 8 : 15 points
component 222 : 12 points
component 219 : 12 points
component 28 : 12 points
component 15 : 12 points
component 221 : 10 points
component 220 : 10 points
component 117 : 10 points
component 116 : 10 points
component 95 : 10 points
component 94 : 10 points
component 22 : 10 points
component 21 : 10 points
component 72 : 5 points
component 215 : 4 points
component 205 : 4 points
component 32 : 4 points
component 31 : 4 points
component 202 : 3 points
component 216 : 2 points
component 206 : 2 points
component 182 : 2 points
component 62 : 2 points
component 34 : 2 points
component 33 : 2 points
component 30 : 2 points
component 228 : 1 points
component 227 : 1 points
component 226 : 1 points
component 225 : 1 points
component 212 : 1 points
component 211 : 1 points
component 210 : 1 points
component 209 : 1 points
component 201 : 1 points
component 200 : 1 points
component 199 : 1 points
component 198 : 1 points
component 197 : 1 points
component 196 : 1 points
component 194 : 1 points
component 193 : 1 points
component 192 : 1 points
component 191 : 1 points
component 190 : 1 points
component 189 : 1 points
component 187 : 1 points
component 186 : 1 points
component 185 : 1 points
component 175 : 1 points
component 174 : 1 points
component 173 : 1 points
component 172 : 1 points
component 171 : 1 points
component 170 : 1 points
component 169 : 1 points
component 168 : 1 points
component 167 : 1 points
component 166 : 1 points
component 165 : 1 points
component 164 : 1 points
component 157 : 1 points
component 156 : 1 points
component 155 : 1 points
component 154 : 1 points
component 153 : 1 points
component 152 : 1 points
component 151 : 1 points
component 150 : 1 points
component 149 : 1 points
component 148 : 1 points
component 147 : 1 points
component 146 : 1 points
component 145 : 1 points
component 144 : 1 points
component 143 : 1 points
component 142 : 1 points
component 141 : 1 points
component 140 : 1 points
component 139 : 1 points
component 138 : 1 points
component 137 : 1 points
component 136 : 1 points
component 135 : 1 points
component 134 : 1 points
component 133 : 1 points
component 132 : 1 points
component 131 : 1 points
component 130 : 1 points
component 129 : 1 points
component 128 : 1 points
component 127 : 1 points
component 126 : 1 points
component 125 : 1 points
component 124 : 1 points
component 123 : 1 points
component 122 : 1 points
component 119 : 1 points
component 118 : 1 points
component 114 : 1 points
component 113 : 1 points
component 112 : 1 points
component 110 : 1 points
component 109 : 1 points
component 108 : 1 points
component 107 : 1 points
component 106 : 1 points
component 105 : 1 points
component 104 : 1 points
component 103 : 1 points
component 102 : 1 points
component 101 : 1 points
component 100 : 1 points
component 99 : 1 points
component 98 : 1 points
component 93 : 1 points
component 92 : 1 points
component 88 : 1 points
component 87 : 1 points
component 86 : 1 points
component 85 : 1 points
component 84 : 1 points
component 83 : 1 points
component 82 : 1 points
component 81 : 1 points
component 79 : 1 points
component 77 : 1 points
component 76 : 1 points
component 75 : 1 points
component 71 : 1 points
component 70 : 1 points
component 69 : 1 points
component 68 : 1 points
component 67 : 1 points
component 66 : 1 points
component 65 : 1 points
component 64 : 1 points
component 63 : 1 points
component 61 : 1 points
component 60 : 1 points
component 59 : 1 points
component 58 : 1 points
component 57 : 1 points
component 56 : 1 points
component 50 : 1 points
component 49 : 1 points
component 42 : 1 points
component 41 : 1 points
component 35 : 1 points
component 24 : 1 points
component 23 : 1 points
component 20 : 1 points
component 19 : 1 points
component 13 : 1 points
component 4 : 1 points
component 2 : 1 points
filtering...
after filtering: 235 components
ylPropagateAlongField: reading field...
ylPropagateAlongField: reading seeds...
yl::PropagateAlongField::propagate_regions:
maximum propagation distance: 6 mm.
1 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
2 / 31 slices processed. 515 voxels propagated, 1 dead-end, 22 lost...
3 / 31 slices processed. 2628 voxels propagated, 95 dead-end, 22 lost...
4 / 31 slices processed. 5021 voxels propagated, 209 dead-end, 22 lost...
5 / 31 slices processed. 7116 voxels propagated, 245 dead-end, 22 lost...
6 / 31 slices processed. 8300 voxels propagated, 318 dead-end, 22 lost...
7 / 31 slices processed. 9125 voxels propagated, 365 dead-end, 22 lost...
8 / 31 slices processed. 9127 voxels propagated, 365 dead-end, 22 lost...
9 / 31 slices processed. 9147 voxels propagated, 366 dead-end, 22 lost...
10 / 31 slices processed. 9355 voxels propagated, 379 dead-end, 22 lost...
11 / 31 slices processed. 9401 voxels propagated, 385 dead-end, 22 lost...
12 / 31 slices processed. 10199 voxels propagated, 399 dead-end, 22 lost...
13 / 31 slices processed. 10216 voxels propagated, 400 dead-end, 22 lost...
14 / 31 slices processed. 10451 voxels propagated, 414 dead-end, 22 lost...
15 / 31 slices processed. 10507 voxels propagated, 414 dead-end, 22 lost...
16 / 31 slices processed. 10588 voxels propagated, 423 dead-end, 22 lost...
17 / 31 slices processed. 10753 voxels propagated, 430 dead-end, 22 lost...
18 / 31 slices processed. 10831 voxels propagated, 431 dead-end, 22 lost...
19 / 31 slices processed. 10876 voxels propagated, 432 dead-end, 22 lost...
20 / 31 slices processed. 10890 voxels propagated, 432 dead-end, 22 lost...
21 / 31 slices processed. 10932 voxels propagated, 432 dead-end, 22 lost...
22 / 31 slices processed. 10956 voxels propagated, 432 dead-end, 22 lost...
23 / 31 slices processed. 11073 voxels propagated, 432 dead-end, 22 lost...
24 / 31 slices processed. 11080 voxels propagated, 432 dead-end, 22 lost...
25 / 31 slices processed. 11107 voxels propagated, 432 dead-end, 22 lost...
26 / 31 slices processed. 11108 voxels propagated, 432 dead-end, 22 lost...
27 / 31 slices processed. 11110 voxels propagated, 432 dead-end, 22 lost...
28 / 31 slices processed. 11121 voxels propagated, 432 dead-end, 22 lost...
29 / 31 slices processed. 11132 voxels propagated, 432 dead-end, 22 lost...
30 / 31 slices processed. 11137 voxels propagated, 432 dead-end, 22 lost...
31 / 31 slices processed. 11152 voxels propagated, 432 dead-end, 22 lost...
yl::PropagateAlongField::propagate_regions: 11152 propagated, 432 dead-end, 22 lost.
ylPropagateAlongField: writing output regions /tmp/tmpm2cxjon_capsul.nii.gz as Volume of S32...
ylPropagateAlongField: writing destination points
ylPropagateAlongField: reading field...
ylPropagateAlongField: reading seeds...
yl::PropagateAlongField::propagate_regions:
maximum propagation distance: 6 mm.
2 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
2 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
3 / 31 slices processed. 363 voxels propagated, 28 dead-end, 1 lost...
4 / 31 slices processed. 1276 voxels propagated, 96 dead-end, 2 lost...
5 / 31 slices processed. 2087 voxels propagated, 162 dead-end, 3 lost...
6 / 31 slices processed. 2222 voxels propagated, 171 dead-end, 4 lost...
7 / 31 slices processed. 2225 voxels propagated, 171 dead-end, 4 lost...
8 / 31 slices processed. 2228 voxels propagated, 171 dead-end, 4 lost...
9 / 31 slices processed. 2364 voxels propagated, 181 dead-end, 4 lost...
10 / 31 slices processed. 2481 voxels propagated, 188 dead-end, 4 lost...
11 / 31 slices processed. 3241 voxels propagated, 259 dead-end, 4 lost...
12 / 31 slices processed. 3472 voxels propagated, 273 dead-end, 4 lost...
13 / 31 slices processed. 4121 voxels propagated, 335 dead-end, 4 lost...
14 / 31 slices processed. 4219 voxels propagated, 357 dead-end, 4 lost...
15 / 31 slices processed. 5173 voxels propagated, 435 dead-end, 4 lost...
16 / 31 slices processed. 5614 voxels propagated, 473 dead-end, 4 lost...
17 / 31 slices processed. 5966 voxels propagated, 494 dead-end, 4 lost...
18 / 31 slices processed. 6391 voxels propagated, 522 dead-end, 4 lost...
19 / 31 slices processed. 6810 voxels propagated, 555 dead-end, 4 lost...
20 / 31 slices processed. 7364 voxels propagated, 599 dead-end, 4 lost...
21 / 31 slices processed. 7422 voxels propagated, 604 dead-end, 4 lost...
22 / 31 slices processed. 7697 voxels propagated, 629 dead-end, 4 lost...
23 / 31 slices processed. 7954 voxels propagated, 643 dead-end, 4 lost...
24 / 31 slices processed. 8574 voxels propagated, 671 dead-end, 4 lost...
25 / 31 slices processed. 8651 voxels propagated, 675 dead-end, 4 lost...
26 / 31 slices processed. 8691 voxels propagated, 680 dead-end, 4 lost...
27 / 31 slices processed. 8801 voxels propagated, 688 dead-end, 4 lost...
28 / 31 slices processed. 8889 voxels propagated, 694 dead-end, 4 lost...
29 / 31 slices processed. 8966 voxels propagated, 699 dead-end, 4 lost...
30 / 31 slices processed. 8999 voxels propagated, 701 dead-end, 4 lost...
31 / 31 slices processed. 9057 voxels propagated, 701 dead-end, 4 lost...
yl::PropagateAlongField::propagate_regions: 9057 propagated, 701 dead-end, 4 lost.
ylPropagateAlongField: writing output regions /tmp/tmpnktgolw9capsul.nii.gz as Volume of S32...
ylPropagateAlongField: writing destination points
/casa/install/bin/ylRelabelConjunction: 1541 regions in conjunction
input file: /tmp/tmp4oafueg7capsul.nii.gz is processed as Volume / S32
output file: /tmp/tmptjr3zin3capsul.nii.gz is processed as Volume / S32 (data type kept)
minsize: 0, maxsize: 0, nummax: 0
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z: 22
z: 23
z: 24
z: 25
z: 26
z: 27
z: 28
z: 29
z: 30
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filtering...
after filtering: 1700 components
yl::IterativeRegionMerger::merge_worst_regions_iteratively:
computing initial region qualities...
1700 regions will be processed.
filling in neighbourhoods...
iteratively merging regions...
Phase 1: processing non-traversing regions
Phase 2: all regions are traversing, merging until goal diameter
end: 78 regions.
.ylUpwindDistance: reading field...
ylUpwindDistance: reading domain volume...
ylUpwindDistance: computing upwind distance...
initializing front...
upwinding...
finished after 9672 iterations (0 NaN results).
ylUpwindDistance: writing output...
.
----------------------------------------------------------------------
Ran 8 tests in 38.941s
OK
euclidean_adv_toward_white.nii.gz: RMS error = 0.067 mm, bias = -0.042 mm (RMS error <= 0.075)
equivolumetric_depth.nii.gz: RMS error = 2.6%, bias = -1.1% (RMS error <= 0.028)
curvature.nii.gz: RMS error = 0.006 mm^{-1}, bias = 0.002 mm^{-1} (RMS error <= 0.067)
laplacian.nii.gz: RMS error = 1.6%, bias = -0.6% (RMS error <= 0.017)
thickness_adv.nii.gz: RMS error = 0.118 mm, bias = -0.090 mm (RMS error <= 0.12)
equidistant_depth_adv.nii.gz: RMS error = 1.6%, bias = -0.3% (RMS error <= 0.017)
thickness_upw.nii.gz: RMS error = 0.261 mm, bias = 0.250 mm (RMS error <= 0.27)
equidistant_depth_upw.nii.gz: RMS error = 2.3%, bias = -0.4% (RMS error <= 0.024)
euclidean_upw_toward_white.nii.gz: RMS error = 0.211 mm, bias = 0.202 mm (RMS error <= 0.22)
================================================================================
SUCCESS (exit code 0)
Finished: SUCCESS
![[Jenkins]](/builds/static/478a8f5f/images/svgs/logo.svg){kind=logo}
