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-- Up-to-date: /casa/host/install/bin/constelBundlesFiltering
-- Up-to-date: /casa/host/install/bin/constelConnectionDensityTexture
-- Up-to-date: /casa/host/install/bin/constelConnectivityMatrix
-- Up-to-date: /casa/host/install/bin/constelFibersLengths
-- Up-to-date: /casa/host/install/bin/constelMeanConnectivityProfileFromMatrix
-- Up-to-date: /casa/host/install/bin/constelSelectBundlesFromNames
-- Up-to-date: /casa/host/install/bin/constelSelectFibersFromMesh
-- Up-to-date: /casa/host/install/python/constel/constelsip.so
-- Up-to-date: /casa/host/install/python/constel/constelsip.so
Built target install-constellation-nonfree
-- Install configuration: "Release"
-- Install component: "cortical_surface-nonfree"
-- Up-to-date: /casa/host/install/lib/libcortical_surface.so.5.1.3
-- Up-to-date: /casa/host/install/lib/libcortical_surface.so
-- Up-to-date: /casa/host/install/bin/AimsConstraintCleaner
-- Up-to-date: /casa/host/install/bin/AimsGyriStuff
-- Up-to-date: /casa/host/install/bin/AimsCorticalReferential
-- Up-to-date: /casa/host/install/bin/AimsMeshIsoLine
-- Up-to-date: /casa/host/install/bin/AimsCorticalThickness
-- Up-to-date: /casa/host/install/bin/AimsFunctionProjection
-- Up-to-date: /casa/host/install/bin/AimsMeshMedianSurface
-- Up-to-date: /casa/host/install/bin/AimsCoordinateGridMesh
-- Up-to-date: /casa/host/install/bin/AimsCoordinatesTextureToMesh
-- Up-to-date: /casa/host/install/bin/AimsCoordinatesToTexture
-- Up-to-date: /casa/host/install/bin/AimsFlattenCortex
-- Up-to-date: /casa/host/install/bin/AimsParameterizeGyri
-- Up-to-date: /casa/host/install/bin/AimsParameterizeSulcus
-- Up-to-date: /casa/host/install/bin/AimsPlotOnSPhericalAtlas
-- Up-to-date: /casa/host/install/bin/AimsSulcusCorticalSnake
-- Up-to-date: /casa/host/install/bin/AimsTextureToAtlas
-- Up-to-date: /casa/host/install/bin/surfTexActivationSimulation
-- Up-to-date: /casa/host/install/bin/surfStructuralAnalysis
-- Up-to-date: /casa/host/install/bin/AimsCheck2DCoordinates
-- Up-to-date: /casa/host/install/bin/AimsMeshToAtlas
-- Up-to-date: /casa/host/install/bin/AimsSulcusNormalizeDepthProfile
-- Up-to-date: /casa/host/install/bin/AimsConformalMapping
-- Up-to-date: /casa/host/install/bin/AimsMeshCoordinatesToDecimated
-- Up-to-date: /casa/host/install/bin/AimsExtractGyrus
-- Up-to-date: /casa/host/install/bin/AimsMeshToMeshPoint
-- Up-to-date: /casa/host/install/bin/AimsPlotCoordinatesOnMesh
-- Up-to-date: /casa/host/install/bin/PlotFociForValidation
-- Up-to-date: /casa/host/install/bin/AimsCoordinatesToIndex
-- Up-to-date: /casa/host/install/bin/AimsGyriRegularization
-- Up-to-date: /casa/host/install/bin/AimsGroupGyri
-- Up-to-date: /casa/host/install/bin/AimsGeodesicPath
-- Up-to-date: /casa/host/install/bin/AimsInterpolateVolumeToSurface
-- Up-to-date: /casa/host/install/bin/AimsSulcalLines
-- Up-to-date: /casa/host/install/bin/AimsTextureCompare
-- Up-to-date: /casa/host/install/bin/AimsExactDepthArea
Built target install-cortical_surface-nonfree
Built target cortical_surface-gpl_target_7
Built target cortical_surface-gpl_target_3
Built target cortical_surface-gpl_target_5
-- Install configuration: "Release"
-- Install component: "cortical_surface-gpl"
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/cortical_surface.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/__pycache__/cortical_surface.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/__pycache__/cortical_surface.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.0/cortical_surface.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.0/__pycache__/cortical_surface.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.0/__pycache__/cortical_surface.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.1.0/cortical_surface.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.1.0/__pycache__/cortical_surface.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.1.0/__pycache__/cortical_surface.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.2.0/cortical_surface.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.2.0/__pycache__/cortical_surface.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/brainvisa-3.2.0/__pycache__/cortical_surface.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/flat/cortical_surface.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/flat/__pycache__/cortical_surface.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/flat/__pycache__/cortical_surface.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/shared/surfaceanalysis.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/shared/__pycache__/surfaceanalysis.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/hierarchies/shared/__pycache__/surfaceanalysis.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/HipHopCorticalParameterization.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/__pycache__/HipHopCorticalParameterization.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/__pycache__/HipHopCorticalParameterization.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/ParameterizeSulcus2015.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/__pycache__/ParameterizeSulcus2015.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/__pycache__/ParameterizeSulcus2015.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/SulcalPitsExtraction.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/__pycache__/SulcalPitsExtraction.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/__pycache__/SulcalPitsExtraction.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/AverageSulcusMorphologicalCurves.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/AverageSulcusMorphologicalCurves.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/AverageSulcusMorphologicalCurves.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/BuildModelFromData.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/BuildModelFromData.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/BuildModelFromData.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/BuildSymmetricModel.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/BuildSymmetricModel.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/BuildSymmetricModel.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/Group_watershed.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/Group_watershed.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/Group_watershed.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/MakeAverageMesh.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/MakeAverageMesh.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/MakeAverageMesh.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/PitsDensityMap.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/PitsDensityMap.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/PitsDensityMap.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/ProjectTextureOntoAtlas.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/ProjectTextureOntoAtlas.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/ProjectTextureOntoAtlas.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/RemeshFromSphere.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/RemeshFromSphere.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/RemeshFromSphere.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/RemeshToAtlas.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/RemeshToAtlas.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/RemeshToAtlas.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/SendTextureToAtlas.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/SendTextureToAtlas.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/SendTextureToAtlas.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/averageSulci.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/averageSulci.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/group/__pycache__/averageSulci.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/MeshArea.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/__pycache__/MeshArea.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/__pycache__/MeshArea.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/MeshFiedlerLength.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/__pycache__/MeshFiedlerLength.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/__pycache__/MeshFiedlerLength.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/ParcelsArea.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/__pycache__/ParcelsArea.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/__pycache__/ParcelsArea.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/ParcelsVolume.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/__pycache__/ParcelsVolume.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/morphometry/__pycache__/ParcelsVolume.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/ChangeTemplateReferential.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ChangeTemplateReferential.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ChangeTemplateReferential.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/CingularPoleProjectionLeft.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CingularPoleProjectionLeft.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CingularPoleProjectionLeft.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/CingularPoleProjectionRight.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CingularPoleProjectionRight.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CingularPoleProjectionRight.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/ConstraintCleanerLeft.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ConstraintCleanerLeft.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ConstraintCleanerLeft.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/ConstraintCleanerRight.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ConstraintCleanerRight.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ConstraintCleanerRight.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/CorticalConstraintsLeft.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CorticalConstraintsLeft.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CorticalConstraintsLeft.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/CorticalConstraintsRight.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CorticalConstraintsRight.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CorticalConstraintsRight.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/CorticalParcellation.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CorticalParcellation.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/CorticalParcellation.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/HarmonicMappingOrthoLeft.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/HarmonicMappingOrthoLeft.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/HarmonicMappingOrthoLeft.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/HarmonicMappingOrthoRight.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/HarmonicMappingOrthoRight.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/HarmonicMappingOrthoRight.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/HemisphereProcessLeft2012.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/HemisphereProcessLeft2012.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/HemisphereProcessLeft2012.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/HemisphereProcessRight2012.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/HemisphereProcessRight2012.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/HemisphereProcessRight2012.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/InsularPoleProjectionRight.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/InsularPoleProjectionRight.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/InsularPoleProjectionRight.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/LeftHemisphereProcess.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/LeftHemisphereProcess.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/LeftHemisphereProcess.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/ParameterizeHemisphereLeft.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ParameterizeHemisphereLeft.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ParameterizeHemisphereLeft.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/ParameterizeHemisphereRight.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ParameterizeHemisphereRight.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ParameterizeHemisphereRight.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/ParameterizeSulcus.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ParameterizeSulcus.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ParameterizeSulcus.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/ParameterizeUnconstrainedHarmonicLeft.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/__pycache__/ParameterizeUnconstrainedHarmonicLeft.cpython-310.pyc
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-- Up-to-date: /casa/host/install/python/brainvisa/cortical_surface/surface_tools/basic_tools.py
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-- Up-to-date: /casa/host/install/python/brainvisa/cortical_surface/surface_tools/mesh_watershed.py
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-- Up-to-date: /casa/host/install/python/brainvisa/cortical_surface/surface_tools/readSulcusLabelTranslationFile.py
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-- Up-to-date: /casa/host/install/python/brainvisa/cortical_surface/surface_tools/texture_tools.py
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-- Up-to-date: /casa/host/install/python/brainvisa/cortical_surface/surface_tools/__pycache__/texture_tools.cpython-310.opt-1.pyc
Built target install-cortical_surface-gpl
Built target brainvisa_freesurfer_target_5
Built target brainvisa_freesurfer_target_3
-- Install configuration: "Release"
-- Install component: "brainvisa_freesurfer"
-- Up-to-date: /casa/host/install/python/brainvisa/configuration/freesurfer_configuration.py
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-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/__pycache__/freesurferToBrainvisaNativeMeshesConversionPipeline.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/__pycache__/freesurferToBrainvisaNativeMeshesConversionPipeline.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/freesurfer_resample_mesh_to_freesurfer_ico.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/__pycache__/freesurfer_resample_mesh_to_freesurfer_ico.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/__pycache__/freesurfer_resample_mesh_to_freesurfer_ico.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/getCerebellum.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/__pycache__/getCerebellum.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/__pycache__/getCerebellum.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/freesurferGyriViewer.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferGyriViewer.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferGyriViewer.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/freesurferMeshViewer.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferMeshViewer.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferMeshViewer.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/freesurferResampledGyriViewer.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferResampledGyriViewer.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferResampledGyriViewer.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/freesurferResampledTextureDataViewer.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferResampledTextureDataViewer.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferResampledTextureDataViewer.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/freesurferTextureDataViewer.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferTextureDataViewer.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Viewers/__pycache__/freesurferTextureDataViewer.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/converters/freesurferMgzToNifti.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/converters/__pycache__/freesurferMgzToNifti.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/converters/__pycache__/freesurferMgzToNifti.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/converters/freesurferNiftiToMgz.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/converters/__pycache__/freesurferNiftiToMgz.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/converters/__pycache__/freesurferNiftiToMgz.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/freeSurferPipelineCompleteLongitudinal.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/__pycache__/freeSurferPipelineCompleteLongitudinal.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/__pycache__/freeSurferPipelineCompleteLongitudinal.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/freesurferPipelineComplete.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/__pycache__/freesurferPipelineComplete.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/__pycache__/freesurferPipelineComplete.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/freesurfer_qc_table.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/__pycache__/freesurfer_qc_table.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/__pycache__/freesurfer_qc_table.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/types/freesurferShared_types.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/types/__pycache__/freesurferShared_types.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/types/__pycache__/freesurferShared_types.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/types/freesurfer_types.py
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/types/__pycache__/freesurfer_types.cpython-310.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/types/__pycache__/freesurfer_types.cpython-310.opt-1.pyc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/freesurfer.minf
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/freesurfer.png
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/AverageBrain/freesurferCreateGroup.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/AverageBrain/freesurferMeanGyriTexture.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/AverageBrain/freesurferMeanMesh.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/AverageBrain/freesurfer_average_brain_pipeline.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Import/Import_FROM_FreeSurfer_TO_Morpho.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/freesurferCreateSubject.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/freesurferFilesExist.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/freesurferIsinComputing.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/freesurferPipeline.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/freesurferToBrainvisaConversionPipeline.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/freesurferToBrainvisaConversionPipelineLight.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/Tools/freesurfer_resample_mesh_to_freesurfer_ico.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/category_documentation.minf
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/freesurferPipelineComplete.procdoc
-- Up-to-date: /casa/host/install/brainvisa/toolboxes/freesurfer/processes/freesurfer_qc_table.procdoc
Built target install-brainvisa_freesurfer
Built target install-runtime
-- Install configuration: "Release"
-- Install component: "Brainvisa-test"
Built target install-Brainvisa-test
-- Install configuration: "Release"
-- Install component: "brainvisa-cmake-test"
Built target install-brainvisa-cmake-test
-- Install configuration: "Release"
-- Install component: "casa-distro-test"
Built target install-casa-distro-test
-- Install configuration: "Release"
-- Install component: "brainvisa-share-test"
Built target install-brainvisa-share-test
-- Install configuration: "Release"
-- Install component: "soma-base-test"
Built target install-soma-base-test
-- Install configuration: "Release"
-- Install component: "soma-io-test"
-- Installing: /casa/host/install/bin/cartoRcptr_test
-- Set runtime path of "/casa/host/install/bin/cartoRcptr_test" to ""
-- Installing: /casa/host/install/bin/cartoScopedptr_test
-- Set runtime path of "/casa/host/install/bin/cartoScopedptr_test" to ""
-- Installing: /casa/host/install/bin/cartoSharedptr_test
-- Set runtime path of "/casa/host/install/bin/cartoSharedptr_test" to ""
-- Installing: /casa/host/install/bin/cartoWeakptr_test
-- Set runtime path of "/casa/host/install/bin/cartoWeakptr_test" to ""
-- Installing: /casa/host/install/bin/cartoAlgorithm_test
-- Set runtime path of "/casa/host/install/bin/cartoAlgorithm_test" to ""
-- Installing: /casa/host/install/bin/cartoConversion_test
-- Set runtime path of "/casa/host/install/bin/cartoConversion_test" to ""
-- Installing: /casa/host/install/bin/cartoDataTypeTraits_test
-- Set runtime path of "/casa/host/install/bin/cartoDataTypeTraits_test" to ""
-- Installing: /casa/host/install/bin/cartoMultiThread_test
-- Set runtime path of "/casa/host/install/bin/cartoMultiThread_test" to ""
-- Installing: /casa/host/install/bin/cartoMutex_test
-- Set runtime path of "/casa/host/install/bin/cartoMutex_test" to ""
-- Installing: /casa/host/install/bin/cartoThreadedRcptr_test
-- Set runtime path of "/casa/host/install/bin/cartoThreadedRcptr_test" to ""
-- Installing: /casa/host/install/bin/cartoUuid_test
-- Set runtime path of "/casa/host/install/bin/cartoUuid_test" to ""
-- Installing: /casa/host/install/bin/cartoObject_test
-- Set runtime path of "/casa/host/install/bin/cartoObject_test" to ""
-- Installing: /casa/host/install/bin/somaCapabilities_test
-- Set runtime path of "/casa/host/install/bin/somaCapabilities_test" to ""
-- Installing: /casa/host/install/bin/somaDSList_test
-- Set runtime path of "/casa/host/install/bin/somaDSList_test" to ""
Built target install-soma-io-test
-- Install configuration: "Release"
-- Install component: "soma-workflow-test"
Built target install-soma-workflow-test
-- Install configuration: "Release"
-- Install component: "capsul-test"
Built target install-capsul-test
-- Install configuration: "Release"
-- Install component: "populse_db-test"
Built target install-populse_db-test
-- Install configuration: "Release"
-- Install component: "aims-free-test"
-- Installing: /casa/host/install/bin/cartoVolume_test
-- Set runtime path of "/casa/host/install/bin/cartoVolume_test" to ""
-- Installing: /casa/host/install/bin/AimsStructuringElement_test
-- Set runtime path of "/casa/host/install/bin/AimsStructuringElement_test" to ""
-- Installing: /casa/host/install/bin/AimsPartialIO_test
-- Set runtime path of "/casa/host/install/bin/AimsPartialIO_test" to ""
-- Installing: /casa/host/install/bin/AimsVarious_test
-- Set runtime path of "/casa/host/install/bin/AimsVarious_test" to ""
-- Installing: /casa/host/install/bin/AimsTransformation_test
-- Set runtime path of "/casa/host/install/bin/AimsTransformation_test" to ""
Built target install-aims-free-test
-- Install configuration: "Release"
-- Install component: "aims-gpl-test"
Built target install-aims-gpl-test
-- Install configuration: "Release"
-- Install component: "anatomist-free-test"
Built target install-anatomist-free-test
-- Install configuration: "Release"
-- Install component: "anatomist-gpl-test"
Built target install-anatomist-gpl-test
-- Install configuration: "Release"
-- Install component: "axon-test"
Built target install-axon-test
-- Install configuration: "Release"
-- Install component: "brainvisa-spm-test"
Built target install-brainvisa-spm-test
Built target highres-cortex_target_8
Built target highres-cortex_target_5
-- Install configuration: "Release"
-- Install component: "highres-cortex-test"
Built target install-highres-cortex-test
-- Install configuration: "Release"
-- Install component: "morphologist-nonfree-test"
-- Installing: /casa/host/install/bin/vip_test_well_composed_configurations
-- Set runtime path of "/casa/host/install/bin/vip_test_well_composed_configurations" to ""
-- Installing: /casa/host/install/bin/vip_test_well_composed_topology
-- Set runtime path of "/casa/host/install/bin/vip_test_well_composed_topology" to ""
Built target install-morphologist-nonfree-test
-- Install configuration: "Release"
-- Install component: "morphologist-gpl-test"
Built target install-morphologist-gpl-test
-- Install configuration: "Release"
-- Install component: "morphologist-baby-test"
Built target install-morphologist-baby-test
-- Install configuration: "Release"
-- Install component: "sulci-nonfree-test"
Built target install-sulci-nonfree-test
-- Install configuration: "Release"
-- Install component: "morphologist-ui-test"
Built target install-morphologist-ui-test
-- Install configuration: "Release"
-- Install component: "morpho-deepsulci-test"
Built target install-morpho-deepsulci-test
-- Install configuration: "Release"
-- Install component: "brainrat-gpl-test"
Built target install-brainrat-gpl-test
-- Install configuration: "Release"
-- Install component: "brainrat-private-test"
Built target install-brainrat-private-test
-- Install configuration: "Release"
-- Install component: "bioprocessing-test"
Built target install-bioprocessing-test
-- Install configuration: "Release"
-- Install component: "primatologist-gpl-test"
Built target install-primatologist-gpl-test
-- Install configuration: "Release"
-- Install component: "constellation-gpl-test"
Built target install-constellation-gpl-test
-- Install configuration: "Release"
-- Install component: "constellation-nonfree-test"
Built target install-constellation-nonfree-test
-- Install configuration: "Release"
-- Install component: "cortical_surface-nonfree-test"
Built target install-cortical_surface-nonfree-test
-- Install configuration: "Release"
-- Install component: "cortical_surface-gpl-test"
Built target install-cortical_surface-gpl-test
-- Install configuration: "Release"
-- Install component: "brainvisa_freesurfer-test"
Built target install-brainvisa_freesurfer-test
Built target install-test
----------------------------------------
Consolidated casa_distro environment configuration:
{
    "branch": "5.1",
    "casa_distro_compatibility": "3",
    "config_files": [
        "/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/conf/casa_distro.json",
        "/home/a-sac-ns-brainvisa/.config/casa-distro/casa_distro_3.json"
    ],
    "container_type": "singularity",
    "directory": "/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3",
    "distro": "cea",
    "env": {
        "CASA_DISTRO": "{distro}",
        "CASA_ENVIRONMENT": "{name}",
        "CASA_HOST_DIR": "{directory}",
        "CASA_SYSTEM": "{system}",
        "SOMAWF_INPUT_PARAMS": "$SOMAWF_INPUT_PARAMS",
        "SOMAWF_OUTPUT_PARAMS": "$SOMAWF_OUTPUT_PARAMS"
    },
    "gui_env": {
        "DISPLAY": "$DISPLAY"
    },
    "image": "../casa-dev-5.3-25.sif",
    "image_id": "160adba6-b807-42c9-ae6d-2c5443d0466f",
    "image_version": "5.3",
    "mounts": {
        "/casa/home": "/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/home",
        "/casa/host": "{directory}",
        "/drf": "/drf",
        "/home": "/home",
        "/host": "/",
        "/i2bm": "/i2bm",
        "/media": "/media",
        "/mnt": "/mnt",
        "/neurospin": "/neurospin",
        "/srv": "/srv",
        "/var/lib/xkb": "/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/home/.varlib/xkb",
        "/volatile": "/volatile"
    },
    "name": "cea-5.1-5.3",
    "system": "ubuntu-22.04",
    "type": "dev"
}
Running singularity with the following command:
'/usr/bin/apptainer' 'run' '--cleanenv' '--pwd' '/casa/host/build' '--bind' '/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3:/casa/host' '--bind' '/:/host' '--bind' '/drf:/drf' '--bind' '/home:/home' '--bind' '/i2bm:/i2bm' '--bind' '/media:/media' '--bind' '/mnt:/mnt' '--bind' '/neurospin:/neurospin' '--bind' '/srv:/srv' '--bind' '/volatile:/volatile' '--bind' '/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/home:/casa/home' '--bind' '/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/home/.varlib/xkb:/var/lib/xkb' '--bind' '/home/a-sac-ns-brainvisa' '--home' '/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/home:/casa/home' '/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/../casa-dev-5.3-28.sif' 'bash' '-c' 'bv_env_test make BRAINVISA_INSTALL_PREFIX=/casa/host/install post-install'

Using the following environment:
    APPTAINERENV_CASA_BRANCH=5.1
    APPTAINERENV_CASA_DISTRO=cea
    APPTAINERENV_CASA_ENVIRONMENT=cea-5.1-5.3
    APPTAINERENV_CASA_HOST_DIR=/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3
    APPTAINERENV_CASA_HOST_HOME=/home/a-sac-ns-brainvisa
    APPTAINERENV_CASA_SYSTEM=ubuntu-22.04
    APPTAINERENV_SOMAWF_INPUT_PARAMS=$SOMAWF_INPUT_PARAMS
    APPTAINERENV_SOMAWF_OUTPUT_PARAMS=$SOMAWF_OUTPUT_PARAMS
    CASA_BASE_DIRECTORY=/volatile/a-sac-ns-brainvisa/bbi_nightly
    CASA_DIR=/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3
    HOME=/home/a-sac-ns-brainvisa
    LANG=fr_FR.UTF-8
    LOGNAME=a-sac-ns-brainvisa
    MAILTO=appli@saxifrage.cea.fr
    PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
    PWD=/home/a-sac-ns-brainvisa
    SHELL=/bin/sh
    TMPDIR=/volatile/tmp/a-sac-ns-brainvisa
    TZ=:/etc/localtime
----------------------------------------
Error in sitecustomize; set PYTHONVERBOSE for traceback:
ModuleNotFoundError: No module named 'sitecustomize.bv_maker_pure_python'
Initializing brainvisa... (takes a while)...


 _Process **Update databases** started on 2025/06/30 05:06_

Generating database tables for
/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/constellation_matrix

 **Clear database:
/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/constellation_matrix**

 **Update database:
/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/constellation_matrix**

/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/constellation_matrix:
parse directories and insert items

/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/constellation_matrix:
276 files are stored as 208 DiskItems in 0 seconds

Generating database tables for
/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/freesurfer_gyri

 **Clear database:
/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/freesurfer_gyri**

 **Update database:
/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/freesurfer_gyri**

/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/freesurfer_gyri:
parse directories and insert items

/casa/host/install/share/constellation-5.1/constellation_atlas_hcp_200s/freesurfer_gyri:
3 files are stored as 3 DiskItems in 0 seconds

  
 _Process **Update databases** finished on 2025/06/30 05:06 (1 seconds)_

Built target constel_install_shared_index
Error in sitecustomize; set PYTHONVERBOSE for traceback:
ModuleNotFoundError: No module named 'sitecustomize.bv_maker_pure_python'
Could not use Matplotlib: <class 'ImportError'> Cannot load backend 'Qt5Agg' which requires the 'qt' interactive framework, as 'headless' is currently running
Loading toolbox baby
Loading toolbox bioprocessing
Loading toolbox brainrat
Loading toolbox constellation
Loading toolbox cortical_surface
Loading toolbox data management
Loading toolbox disco
Loading toolbox freesurfer
Loading toolbox highres_cortex
Loading toolbox morphologist
Loading toolbox primatologist
Loading toolbox spm
Loading toolbox structural_analysis
Loading toolbox tools
Loading toolbox viewers
Loading toolbox My processes
The log file for this session is '/casa/home/.brainvisa/brainvisa7.log'

Database /casa/host/install/share/brainvisa-share-5.1 must be updated because
there is no database file.

exec: /casa/host/install/brainvisa/toolboxes/constellation/startup.py
exec: /casa/host/install/brainvisa/toolboxes/morphologist/startup.py
Generating database tables for /casa/host/install/share/brainvisa-share-5.1

/casa/host/install/share/brainvisa-share-5.1: parse directories and insert
items

Warning: changed uuid of "'/casa/host/install/share/brainvisa-share-5.1/models/models_2008/descriptive_models/segments/global_registered_spam_left/meshes/global_SPAM.referential'" because another file has the same uuid: 5f83f18d-e211-6705-99a0-720c4707901b
/casa/host/install/share/brainvisa-share-5.1: 189 files are stored as 176
DiskItems in 0 seconds

Built target axon_install_shared_index
Built target post-install
installing spm12-standalone from /neurospin/brainvisa/thirdparty/spm12-standalone-7771.tar...
---------- Singularity recipe ----------
Bootstrap: localimage
    From: /volatile/a-sac-ns-brainvisa/bbi_nightly/casa-run-5.3-26.sif

%runscript
    export CASA_SYSTEM='ubuntu-22.04'
    export CASA_TYPE='user'
    export CASA_DISTRO='cea'
    export CASA_VERSION='2025-06-30'

    if [ -d /casa/setup ]; then
        /casa/casa-distro/cbin/casa_container setup_user "$@"
    elif [ $# -ne 0 ]; then
        if [ -f /casa/host/install/bin/bv_env ]; then
            # try r/w install
            /usr/local/bin/entrypoint /casa/host/install/bin/bv_env "$@"
        elif [ -f /casa/install/bin/bv_env ]; then
            # otherwise use the builtin (read-only) install in the image
            /usr/local/bin/entrypoint /casa/install/bin/bv_env "$@"
        else
            # fall back to no bv_env if it is missing
            /usr/local/bin/entrypoint "$@"
        fi
    else
        echo 'The Singularity image has been run without arguments, and'
        echo 'without a setup mount point.'
        echo 'This run will do nothing. If you want to setup an environment'
        echo '(install BrainVISA), then you need to specify an'
        echo 'installation directory as a mount point in the /casa/setup'
        echo 'container directory. Typically, to setup into the host '
        echo "directory ~/brainvisa-$CASA_VERSION, run the following commands:"
        echo
        echo "mkdir -p ~/brainvisa-$CASA_VERSION"
        echo "mv "${SINGULARITY_CONTAINER:-$APPTAINER_CONTAINER}""              "~/brainvisa-$CASA_VERSION/"
        echo "cd ~/brainvisa-$CASA_VERSION"
        echo "singularity run -c -B .:/casa/setup"              "${SINGULARITY_NAME:-$APPTAINER_NAME}"
        echo
        echo 'If you have already setup such an environment, you should'
        echo 'run the image using appropriate options, mount points, and'
        echo 'a command to run (bash for instance).'
        echo 'This is normally done using the 'bv' command found in the'
        echo 'bin/ directory of the install environment directory.'
        echo '(the 'bv' command depends only on Python being installed):'
        echo
        echo "~/brainvisa-$CASA_VERSION/bin/bv bash"
        echo
        echo 'Please visit https://brainvisa.info/ for complete help.'
    fi

%setup
    if [ ! -d ${SINGULARITY_ROOTFS}//casa ]; then mkdir -p ${SINGULARITY_ROOTFS}//casa; fi
    cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/install ${SINGULARITY_ROOTFS}//casa/install
    if [ ! -d ${SINGULARITY_ROOTFS}//usr/local ]; then mkdir -p ${SINGULARITY_ROOTFS}//usr/local; fi
    tar -C ${SINGULARITY_ROOTFS}//usr/local --no-same-owner -xf /neurospin/brainvisa/thirdparty/spm12-standalone-7771.tar
    ln -s spm12-standalone-7771 ${SINGULARITY_ROOTFS}//usr/local/spm12-standalone
    if [ ! -d ${SINGULARITY_ROOTFS}//casa/install/templates/brainvisa ]; then mkdir -p ${SINGULARITY_ROOTFS}//casa/install/templates/brainvisa; fi
    cp -a /volatile/tmp/a-sac-ns-brainvisa/casa_distro_scriptdiemlv4u/spm.py ${SINGULARITY_ROOTFS}//casa/install/templates/brainvisa/spm.py
    if [ ! -d ${SINGULARITY_ROOTFS}//casa/casa-distro ]; then mkdir -p ${SINGULARITY_ROOTFS}//casa/casa-distro; fi
    cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin ${SINGULARITY_ROOTFS}//casa/casa-distro/bin
    if [ ! -d ${SINGULARITY_ROOTFS}//casa/casa-distro ]; then mkdir -p ${SINGULARITY_ROOTFS}//casa/casa-distro; fi
    cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/cbin ${SINGULARITY_ROOTFS}//casa/casa-distro/cbin
    if [ ! -d ${SINGULARITY_ROOTFS}//casa/casa-distro ]; then mkdir -p ${SINGULARITY_ROOTFS}//casa/casa-distro; fi
    cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/python ${SINGULARITY_ROOTFS}//casa/casa-distro/python
    if [ ! -d ${SINGULARITY_ROOTFS}//casa/casa-distro ]; then mkdir -p ${SINGULARITY_ROOTFS}//casa/casa-distro; fi
    cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/etc ${SINGULARITY_ROOTFS}//casa/casa-distro/etc
    if [ ! -d ${SINGULARITY_ROOTFS}//casa/casa-distro ]; then mkdir -p ${SINGULARITY_ROOTFS}//casa/casa-distro; fi
    cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/share ${SINGULARITY_ROOTFS}//casa/casa-distro/share

%post
    if [ ! -d "/casa/install/templates/brainvisa" ]; then mkdir -p "/casa/install/templates/brainvisa"; fi
    chmod a+rx "/casa/install/templates/brainvisa/spm.py"
    /casa/install/templates/brainvisa/spm.py
    find /casa/casa-distro -name __pycache__ -o -name '*\.pyc' -o -name '*~' -exec rm -Rf '{}' \;
    if [ -f /casa/install/share/brainvisa-share-*/database-*.sqlite ]; then touch /casa/install/share/brainvisa-share-*/database-*.sqlite; fi
    echo "{\"image_id\": \"37179a2c-879a-4a0f-808d-46c3a7f4b893\"}" > /casa/image_id

%environment
    export SPM_HTML_BROWSER="0"

----------------------------------------
INFO:    Starting build...
INFO:    Verifying bootstrap image /volatile/a-sac-ns-brainvisa/bbi_nightly/casa-run-5.3-26.sif
INFO:    Extracting local image...
INFO:    Running setup scriptlet
+ [ ! -d /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa ]
+ cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3/install /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/install
+ [ ! -d /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//usr/local ]
+ tar -C /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//usr/local --no-same-owner -xf /neurospin/brainvisa/thirdparty/spm12-standalone-7771.tar
+ ln -s spm12-standalone-7771 /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//usr/local/spm12-standalone
+ [ ! -d /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/install/templates/brainvisa ]
+ mkdir -p /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/install/templates/brainvisa
+ cp -a /volatile/tmp/a-sac-ns-brainvisa/casa_distro_scriptdiemlv4u/spm.py /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/install/templates/brainvisa/spm.py
+ [ ! -d /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro ]
+ mkdir -p /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro
+ cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro/bin
+ [ ! -d /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro ]
+ cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/cbin /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro/cbin
+ [ ! -d /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro ]
+ cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/python /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro/python
+ [ ! -d /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro ]
+ cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/etc /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro/etc
+ [ ! -d /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro ]
+ cp -a /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/share /volatile/tmp/a-sac-ns-brainvisa/build-temp-2578331687/rootfs//casa/casa-distro/share
INFO:    Running post scriptlet
+ [ ! -d /casa/install/templates/brainvisa ]
+ chmod a+rx /casa/install/templates/brainvisa/spm.py
+ /casa/install/templates/brainvisa/spm.py
<soma.configuration.Configuration object at 0x7f482e14b940>
+ find /casa/casa-distro -name __pycache__ -o -name *\.pyc -o -name *~ -exec rm -Rf {} ;
+ [ -f /casa/install/share/brainvisa-share-5.1/database-2.3.sqlite ]
+ touch /casa/install/share/brainvisa-share-5.1/database-2.3.sqlite
+ echo {"image_id": "37179a2c-879a-4a0f-808d-46c3a7f4b893"}
INFO:    Adding environment to container
INFO:    Adding runscript
INFO:    Creating SIF file...
INFO:    Build complete: /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3-userimage.sif

Finished: SUCCESS