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component 270 : 1 points
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component 192 : 1 points
component 167 : 1 points
component 166 : 1 points
component 165 : 1 points
component 162 : 1 points
component 158 : 1 points
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component 153 : 1 points
component 150 : 1 points
component 144 : 1 points
component 142 : 1 points
component 140 : 1 points
component 139 : 1 points
component 135 : 1 points
component 134 : 1 points
component 133 : 1 points
component 132 : 1 points
component 128 : 1 points
component 127 : 1 points
component 125 : 1 points
component 107 : 1 points
component 64 : 1 points
component 53 : 1 points
component 1 : 1 points
filtering...
after filtering: 21644 components
yl::IterativeRegionMerger::merge_worst_regions_iteratively:
computing initial region qualities...
21644 regions will be processed.
filling in neighbourhoods...
iteratively merging regions...
Phase 1: processing non-traversing regions
Phase 2: all regions are traversing, merging until goal diameter
end: 704 regions.
heat/heat.nii.gz: RMS error = 2.1%, bias = -0.5% (RMS error <= 0.021)
isovolume/equivolumic_depth.nii.gz: RMS error = 1.8%, bias = -0.3% (RMS error <= 0.02)
laplace-euclidean/pial-fraction.nii.gz: RMS error = 1.6%, bias = -0.1% (RMS error <= 0.017)
laplace-euclidean/total-length.nii.gz: RMS error = 0.124 mm, bias = -0.096 mm (RMS error <= 0.15)
upwind-euclidean/pial-fraction.nii.gz: RMS error = 2.3%, bias = -0.1% (RMS error <= 0.023)
upwind-euclidean/total-length.nii.gz: RMS error = 0.184 mm, bias = 0.176 mm (RMS error <= 0.19)
================================================================================
SUCCESS (exit code 0)
================================================================================
----------------------------------------
$ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin/casa_distro run name=cea-5.1-5.3-userimage env=BRAINVISA_TEST_RUN_DATA_DIR=/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3-userimage/tests/test,BRAINVISA_TEST_REF_DATA_DIR=/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-5.1-5.3-userimage/tests/ref -- sh -c '/casa/install/bin/bv_env_test "timeout" "-k" "10" "1800" "python3" "-m" "highres_cortex.test.test_capsul"'
----------------------------------------
ylAdvectEuclidean: reading field...
ylAdvectEuclidean: reading domain volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 478 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 2640 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 5188 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 6153 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 6154 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 6156 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 6201 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 6330 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 6917 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 7035 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 7561 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 7578 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 8959 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 9133 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 9229 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 9282 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 9292 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 9316 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 9410 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 9485 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 9501 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 9606 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9608 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9633 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9641 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9645 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9650 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9664 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
.ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
ylIsoCurvature: reading input...
10 / 29 slices processed.
14 / 29 slices processed.
14 / 29 slices processed.
15 / 29 slices processed.
16 / 29 slices processed.
21 / 29 slices processed.
26 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
ylIsoCurvature: writing output...
ylAdvectTubes: reading field...
ylAdvectTubes: reading domain volume...
ylAdvectTubes: reading divergence volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 484 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 2590 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 5052 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 6053 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 6058 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 6060 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 6107 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 6263 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 6660 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 7262 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 7800 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 7996 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 8773 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 9064 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 9202 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 9287 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 9391 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 9530 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 9543 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 9577 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 9578 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 9592 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9612 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9620 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9648 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9656 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9663 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9666 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
ylAdvectTubes: reading field...
ylAdvectTubes: reading domain volume...
ylAdvectTubes: reading divergence volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 347 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 1234 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 1991 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 2137 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 2141 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 2144 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 2451 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 2610 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 3162 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 3521 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 4271 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 4960 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 5744 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 6352 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 7231 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 7374 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 7911 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 7927 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 8203 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 8562 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 8591 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 8769 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 8899 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9060 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9135 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9579 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9584 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9663 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
output type: Volume_FLOAT
output type: Volume_FLOAT
.ylIsoCurvature: reading input...
6 / 29 slices processed.
12 / 29 slices processed.
12 / 29 slices processed.
14 / 29 slices processed.
16 / 29 slices processed.
18 / 29 slices processed.
26 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
29 / 29 slices processed.
ylIsoCurvature: writing output...
.ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
.ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
ylAdvectEuclidean: reading field...
ylAdvectEuclidean: reading domain volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 248 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 1204 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 1959 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 2077 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 2080 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 2082 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 2376 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 2527 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 3409 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 3729 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 5039 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 5078 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 5871 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 6225 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 6354 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 7000 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 7454 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 7985 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 8252 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 8594 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 8816 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 8889 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9142 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9341 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9469 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9499 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9586 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9633 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
ylAdvectEuclidean: reading field...
ylAdvectEuclidean: reading domain volume...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
2 / 31 slices processed. 0 voxels successfully advected, 0 aborted...
3 / 31 slices processed. 508 voxels successfully advected, 0 aborted...
4 / 31 slices processed. 2914 voxels successfully advected, 0 aborted...
5 / 31 slices processed. 5104 voxels successfully advected, 0 aborted...
6 / 31 slices processed. 6107 voxels successfully advected, 0 aborted...
7 / 31 slices processed. 6108 voxels successfully advected, 0 aborted...
8 / 31 slices processed. 6108 voxels successfully advected, 0 aborted...
9 / 31 slices processed. 6136 voxels successfully advected, 0 aborted...
10 / 31 slices processed. 6650 voxels successfully advected, 0 aborted...
11 / 31 slices processed. 6797 voxels successfully advected, 0 aborted...
12 / 31 slices processed. 6800 voxels successfully advected, 0 aborted...
13 / 31 slices processed. 7700 voxels successfully advected, 0 aborted...
14 / 31 slices processed. 8008 voxels successfully advected, 0 aborted...
15 / 31 slices processed. 8848 voxels successfully advected, 0 aborted...
16 / 31 slices processed. 8962 voxels successfully advected, 0 aborted...
17 / 31 slices processed. 9093 voxels successfully advected, 0 aborted...
18 / 31 slices processed. 9236 voxels successfully advected, 0 aborted...
19 / 31 slices processed. 9351 voxels successfully advected, 0 aborted...
20 / 31 slices processed. 9402 voxels successfully advected, 0 aborted...
21 / 31 slices processed. 9424 voxels successfully advected, 0 aborted...
22 / 31 slices processed. 9425 voxels successfully advected, 0 aborted...
23 / 31 slices processed. 9516 voxels successfully advected, 0 aborted...
24 / 31 slices processed. 9520 voxels successfully advected, 0 aborted...
25 / 31 slices processed. 9534 voxels successfully advected, 0 aborted...
26 / 31 slices processed. 9596 voxels successfully advected, 0 aborted...
27 / 31 slices processed. 9604 voxels successfully advected, 0 aborted...
28 / 31 slices processed. 9622 voxels successfully advected, 0 aborted...
29 / 31 slices processed. 9641 voxels successfully advected, 0 aborted...
30 / 31 slices processed. 9666 voxels successfully advected, 0 aborted...
31 / 31 slices processed. 9672 voxels successfully advected, 0 aborted...
yl::advect: 9672 voxels successfully advected, 0 aborted.
output type: Volume_FLOAT
output type: Volume_FLOAT
.ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
ylUpwindDistance: reading field...
ylUpwindDistance: reading domain volume...
ylUpwindDistance: computing upwind distance...
initializing front...
upwinding...
finished after 9672 iterations (0 NaN results).
ylUpwindDistance: writing output...
ylUpwindDistance: reading field...
ylUpwindDistance: reading domain volume...
ylUpwindDistance: computing upwind distance...
initializing front...
upwinding...
finished after 9672 iterations (0 NaN results).
ylUpwindDistance: writing output...
output type: Volume_FLOAT
output type: Volume_FLOAT
.filein : /tmp/tmp3p81m5kpcapsul.nii.gz
fileout : /tmp/tmps_7z2xnrcapsul.nii.gz
encoding: Binary
normal : 0
rescale : 0
format :
type : S32
objtype :
xdim : 0
ydim : 0
zdim : 0
imin : default
imax : default
omin : default
omax : default
reading /tmp/tmp3p81m5kpcapsul.nii.gz as Volume / S16...
reading done
convert to Volume / S32
converting data...
convert done
writing /tmp/tmps_7z2xnrcapsul.nii.gz...
done
FastMarching...
initializing speed map
work voxels: 9672, interface voxels: 90
iter: 0, front size: 90, point: (14, 14, 12), dist: 0
FastMarching...
initializing speed map
work voxels: 81, interface voxels: 90
iter: 0, front size: 90, point: (14, 14, 12), dist: 0
FastMarching...
initializing speed map
work voxels: 9672, interface voxels: 1934
iter: 0, front size: 1934, point: (13, 13, 1), dist: 0
iter: 10000, front size: 530, point: (21, 13, 11), dist: 1.75855
FastMarching...
initializing speed map
work voxels: 18014, interface voxels: 1934
iter: 0, front size: 1934, point: (13, 13, 1), dist: 0
iter: 10000, front size: 1856, point: (0, 15, 23), dist: 0.985738
ylLaplacian: reading classif...
solving Laplace equation using Successive Over-Relaxation
(requested absolute precision 5.0e-05)...
iteration 1, max residual = 3.1e-01
iteration 2, max residual = 2.9e-01
iteration 3, max residual = 2.4e-01
iteration 4, max residual = 2.4e-01
iteration 5, max residual = 1.6e-01
iteration 6, max residual = 1.3e-01
iteration 7, max residual = 1.1e-01
iteration 8, max residual = 8.7e-02
iteration 9, max residual = 8.3e-02
iteration 10, max residual = 6.3e-02
iteration 11, max residual = 8.1e-02
iteration 12, max residual = 3.4e-02
iteration 13, max residual = 2.2e-02
iteration 14, max residual = 7.7e-03
iteration 15, max residual = 5.3e-03
iteration 16, max residual = 5.0e-03
iteration 17, max residual = 3.2e-03
iteration 18, max residual = 2.9e-03
iteration 19, max residual = 1.7e-03
iteration 20, max residual = 1.1e-03
iteration 21, max residual = 7.6e-04
iteration 22, max residual = 4.5e-04
iteration 23, max residual = 4.1e-04
iteration 24, max residual = 3.4e-04
iteration 25, max residual = 2.1e-04
iteration 26, max residual = 1.5e-04
iteration 27, max residual = 1.4e-04
iteration 28, max residual = 1.3e-04
iteration 29, max residual = 8.6e-05
iteration 30, max residual = 5.8e-05
iteration 31, max residual = 4.0e-05
searching for remaining local extrema... 0 found.
ylLaplacian: writing output...
ylPropagateAlongField: reading field...
ylPropagateAlongField: reading seeds...
yl::PropagateAlongField::propagate_regions:
maximum propagation distance: 6 mm.
1 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
2 / 31 slices processed. 519 voxels propagated, 19 dead-end, 22 lost...
3 / 31 slices processed. 1243 voxels propagated, 47 dead-end, 23 lost...
4 / 31 slices processed. 1425 voxels propagated, 49 dead-end, 23 lost...
5 / 31 slices processed. 1444 voxels propagated, 51 dead-end, 24 lost...
6 / 31 slices processed. 1469 voxels propagated, 52 dead-end, 24 lost...
7 / 31 slices processed. 1475 voxels propagated, 52 dead-end, 25 lost...
8 / 31 slices processed. 1475 voxels propagated, 52 dead-end, 25 lost...
9 / 31 slices processed. 1490 voxels propagated, 52 dead-end, 25 lost...
10 / 31 slices processed. 1529 voxels propagated, 52 dead-end, 25 lost...
11 / 31 slices processed. 1546 voxels propagated, 52 dead-end, 25 lost...
12 / 31 slices processed. 1549 voxels propagated, 52 dead-end, 25 lost...
13 / 31 slices processed. 1552 voxels propagated, 52 dead-end, 25 lost...
14 / 31 slices processed. 1573 voxels propagated, 52 dead-end, 25 lost...
15 / 31 slices processed. 1578 voxels propagated, 52 dead-end, 25 lost...
16 / 31 slices processed. 1588 voxels propagated, 52 dead-end, 25 lost...
17 / 31 slices processed. 1601 voxels propagated, 52 dead-end, 25 lost...
18 / 31 slices processed. 1616 voxels propagated, 52 dead-end, 25 lost...
19 / 31 slices processed. 1617 voxels propagated, 52 dead-end, 25 lost...
20 / 31 slices processed. 1619 voxels propagated, 52 dead-end, 25 lost...
21 / 31 slices processed. 1625 voxels propagated, 52 dead-end, 25 lost...
22 / 31 slices processed. 1640 voxels propagated, 52 dead-end, 25 lost...
23 / 31 slices processed. 1666 voxels propagated, 52 dead-end, 25 lost...
24 / 31 slices processed. 1678 voxels propagated, 52 dead-end, 25 lost...
25 / 31 slices processed. 1679 voxels propagated, 52 dead-end, 25 lost...
26 / 31 slices processed. 1691 voxels propagated, 52 dead-end, 25 lost...
27 / 31 slices processed. 1693 voxels propagated, 52 dead-end, 25 lost...
28 / 31 slices processed. 1717 voxels propagated, 52 dead-end, 25 lost...
29 / 31 slices processed. 1826 voxels propagated, 56 dead-end, 25 lost...
30 / 31 slices processed. 1848 voxels propagated, 56 dead-end, 25 lost...
31 / 31 slices processed. 1853 voxels propagated, 56 dead-end, 25 lost...
yl::PropagateAlongField::propagate_regions: 1853 propagated, 56 dead-end, 25 lost.
ylPropagateAlongField: writing output regions /tmp/tmphtxqjxr8capsul.nii.gz as Volume of S32...
ylPropagateAlongField: reading field...
ylPropagateAlongField: reading seeds...
yl::PropagateAlongField::propagate_regions:
maximum propagation distance: 6 mm.
12 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
18 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
19 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
20 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
20 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
22 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
22 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
23 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
24 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
25 / 31 slices processed. 44 voxels propagated, 8 dead-end, 0 lost...
26 / 31 slices processed. 53 voxels propagated, 8 dead-end, 0 lost...
27 / 31 slices processed. 55 voxels propagated, 8 dead-end, 0 lost...
28 / 31 slices processed. 62 voxels propagated, 9 dead-end, 0 lost...
29 / 31 slices processed. 76 voxels propagated, 9 dead-end, 0 lost...
30 / 31 slices processed. 80 voxels propagated, 9 dead-end, 0 lost...
31 / 31 slices processed. 80 voxels propagated, 10 dead-end, 0 lost...
yl::PropagateAlongField::propagate_regions: 80 propagated, 10 dead-end, 0 lost.
ylPropagateAlongField: writing output regions /tmp/tmp5mmedq15capsul.nii.gz as Volume of S32...
input file: raw_exchanged_labels.nii is processed as Volume / S32
output file: connected_exchanged_labels.nii is processed as Volume / S32 (data type kept)
minsize: 0, maxsize: 0, nummax: 0
z: 0
z: 1
z: 2
z: 3
z: 4
z: 5
z: 6
z: 7
z: 8
z: 9
z: 10
z: 11
z: 12
z: 13
z: 14
z: 15
z: 16
z: 17
z: 18
z: 19
z: 20
z: 21
z: 22
z: 23
z: 24
z: 25
z: 26
z: 27
z: 28
z: 29
z: 30
238 components
component 1 : 18014 points
component 80 : 81 points
component 230 : 31 points
component 229 : 31 points
component 224 : 31 points
component 223 : 31 points
component 181 : 31 points
component 180 : 31 points
component 159 : 31 points
component 54 : 31 points
component 53 : 31 points
component 38 : 31 points
component 11 : 31 points
component 10 : 31 points
component 6 : 31 points
component 177 : 30 points
component 176 : 30 points
component 163 : 30 points
component 162 : 30 points
component 48 : 30 points
component 47 : 30 points
component 44 : 30 points
component 43 : 30 points
component 7 : 30 points
component 158 : 27 points
component 37 : 27 points
component 89 : 25 points
component 78 : 25 points
component 74 : 25 points
component 237 : 24 points
component 3 : 24 points
component 217 : 22 points
component 204 : 22 points
component 29 : 22 points
component 16 : 22 points
component 218 : 20 points
component 214 : 20 points
component 213 : 20 points
component 208 : 20 points
component 207 : 20 points
component 179 : 20 points
component 178 : 20 points
component 161 : 20 points
component 160 : 20 points
component 73 : 20 points
component 52 : 20 points
component 51 : 20 points
component 40 : 20 points
component 39 : 20 points
component 27 : 20 points
component 26 : 20 points
component 25 : 20 points
component 18 : 20 points
component 17 : 20 points
component 14 : 18 points
component 235 : 17 points
component 203 : 17 points
component 195 : 17 points
component 55 : 17 points
component 12 : 17 points
component 232 : 16 points
component 183 : 16 points
component 36 : 16 points
component 5 : 16 points
component 234 : 15 points
component 233 : 15 points
component 188 : 15 points
component 184 : 15 points
component 121 : 15 points
component 120 : 15 points
component 115 : 15 points
component 111 : 15 points
component 97 : 15 points
component 96 : 15 points
component 91 : 15 points
component 90 : 15 points
component 46 : 15 points
component 45 : 15 points
component 9 : 15 points
component 8 : 15 points
component 222 : 12 points
component 219 : 12 points
component 28 : 12 points
component 15 : 12 points
component 221 : 10 points
component 220 : 10 points
component 117 : 10 points
component 116 : 10 points
component 95 : 10 points
component 94 : 10 points
component 22 : 10 points
component 21 : 10 points
component 72 : 5 points
component 215 : 4 points
component 205 : 4 points
component 202 : 4 points
component 32 : 4 points
component 31 : 4 points
component 216 : 2 points
component 206 : 2 points
component 182 : 2 points
component 62 : 2 points
component 34 : 2 points
component 33 : 2 points
component 30 : 2 points
component 236 : 1 points
component 231 : 1 points
component 228 : 1 points
component 227 : 1 points
component 226 : 1 points
component 225 : 1 points
component 212 : 1 points
component 211 : 1 points
component 210 : 1 points
component 209 : 1 points
component 201 : 1 points
component 200 : 1 points
component 199 : 1 points
component 198 : 1 points
component 197 : 1 points
component 196 : 1 points
component 194 : 1 points
component 193 : 1 points
component 192 : 1 points
component 191 : 1 points
component 190 : 1 points
component 189 : 1 points
component 187 : 1 points
component 186 : 1 points
component 185 : 1 points
component 175 : 1 points
component 174 : 1 points
component 173 : 1 points
component 172 : 1 points
component 171 : 1 points
component 170 : 1 points
component 169 : 1 points
component 168 : 1 points
component 167 : 1 points
component 166 : 1 points
component 165 : 1 points
component 164 : 1 points
component 157 : 1 points
component 156 : 1 points
component 155 : 1 points
component 154 : 1 points
component 153 : 1 points
component 152 : 1 points
component 151 : 1 points
component 150 : 1 points
component 149 : 1 points
component 148 : 1 points
component 147 : 1 points
component 146 : 1 points
component 145 : 1 points
component 144 : 1 points
component 143 : 1 points
component 142 : 1 points
component 141 : 1 points
component 140 : 1 points
component 139 : 1 points
component 138 : 1 points
component 137 : 1 points
component 136 : 1 points
component 135 : 1 points
component 134 : 1 points
component 133 : 1 points
component 132 : 1 points
component 131 : 1 points
component 130 : 1 points
component 129 : 1 points
component 128 : 1 points
component 127 : 1 points
component 126 : 1 points
component 125 : 1 points
component 124 : 1 points
component 123 : 1 points
component 122 : 1 points
component 119 : 1 points
component 118 : 1 points
component 114 : 1 points
component 113 : 1 points
component 112 : 1 points
component 110 : 1 points
component 109 : 1 points
component 108 : 1 points
component 107 : 1 points
component 106 : 1 points
component 105 : 1 points
component 104 : 1 points
component 103 : 1 points
component 102 : 1 points
component 101 : 1 points
component 100 : 1 points
component 99 : 1 points
component 98 : 1 points
component 93 : 1 points
component 92 : 1 points
component 88 : 1 points
component 87 : 1 points
component 86 : 1 points
component 85 : 1 points
component 84 : 1 points
component 83 : 1 points
component 82 : 1 points
component 81 : 1 points
component 79 : 1 points
component 77 : 1 points
component 76 : 1 points
component 75 : 1 points
component 71 : 1 points
component 70 : 1 points
component 69 : 1 points
component 68 : 1 points
component 67 : 1 points
component 66 : 1 points
component 65 : 1 points
component 64 : 1 points
component 63 : 1 points
component 61 : 1 points
component 60 : 1 points
component 59 : 1 points
component 58 : 1 points
component 57 : 1 points
component 56 : 1 points
component 50 : 1 points
component 49 : 1 points
component 42 : 1 points
component 41 : 1 points
component 35 : 1 points
component 24 : 1 points
component 23 : 1 points
component 20 : 1 points
component 19 : 1 points
component 13 : 1 points
component 4 : 1 points
component 2 : 1 points
filtering...
after filtering: 237 components
ylPropagateAlongField: reading field...
ylPropagateAlongField: reading seeds...
yl::PropagateAlongField::propagate_regions:
maximum propagation distance: 6 mm.
1 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
2 / 31 slices processed. 549 voxels propagated, 4 dead-end, 22 lost...
3 / 31 slices processed. 2633 voxels propagated, 97 dead-end, 23 lost...
4 / 31 slices processed. 5061 voxels propagated, 210 dead-end, 24 lost...
5 / 31 slices processed. 7059 voxels propagated, 244 dead-end, 25 lost...
6 / 31 slices processed. 8170 voxels propagated, 315 dead-end, 26 lost...
7 / 31 slices processed. 8973 voxels propagated, 359 dead-end, 27 lost...
8 / 31 slices processed. 8974 voxels propagated, 359 dead-end, 27 lost...
9 / 31 slices processed. 9076 voxels propagated, 361 dead-end, 27 lost...
10 / 31 slices processed. 9421 voxels propagated, 381 dead-end, 27 lost...
11 / 31 slices processed. 9439 voxels propagated, 382 dead-end, 27 lost...
12 / 31 slices processed. 9836 voxels propagated, 392 dead-end, 27 lost...
13 / 31 slices processed. 10087 voxels propagated, 399 dead-end, 27 lost...
14 / 31 slices processed. 10177 voxels propagated, 401 dead-end, 27 lost...
15 / 31 slices processed. 10407 voxels propagated, 415 dead-end, 27 lost...
16 / 31 slices processed. 10591 voxels propagated, 424 dead-end, 27 lost...
17 / 31 slices processed. 10607 voxels propagated, 424 dead-end, 27 lost...
18 / 31 slices processed. 10656 voxels propagated, 425 dead-end, 27 lost...
19 / 31 slices processed. 10858 voxels propagated, 431 dead-end, 27 lost...
20 / 31 slices processed. 10940 voxels propagated, 432 dead-end, 27 lost...
21 / 31 slices processed. 10997 voxels propagated, 432 dead-end, 27 lost...
22 / 31 slices processed. 11008 voxels propagated, 432 dead-end, 27 lost...
23 / 31 slices processed. 11025 voxels propagated, 432 dead-end, 27 lost...
24 / 31 slices processed. 11027 voxels propagated, 432 dead-end, 27 lost...
25 / 31 slices processed. 11061 voxels propagated, 432 dead-end, 27 lost...
26 / 31 slices processed. 11070 voxels propagated, 432 dead-end, 27 lost...
27 / 31 slices processed. 11096 voxels propagated, 432 dead-end, 27 lost...
28 / 31 slices processed. 11119 voxels propagated, 432 dead-end, 27 lost...
29 / 31 slices processed. 11125 voxels propagated, 432 dead-end, 27 lost...
30 / 31 slices processed. 11143 voxels propagated, 432 dead-end, 27 lost...
31 / 31 slices processed. 11147 voxels propagated, 432 dead-end, 27 lost...
yl::PropagateAlongField::propagate_regions: 11147 propagated, 432 dead-end, 27 lost.
ylPropagateAlongField: writing output regions /tmp/tmpno5ywcf0capsul.nii.gz as Volume of S32...
ylPropagateAlongField: writing destination points
ylPropagateAlongField: reading field...
ylPropagateAlongField: reading seeds...
yl::PropagateAlongField::propagate_regions:
maximum propagation distance: 6 mm.
2 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
2 / 31 slices processed. 0 voxels propagated, 0 dead-end, 0 lost...
3 / 31 slices processed. 396 voxels propagated, 29 dead-end, 1 lost...
4 / 31 slices processed. 1205 voxels propagated, 91 dead-end, 2 lost...
5 / 31 slices processed. 1988 voxels propagated, 153 dead-end, 3 lost...
6 / 31 slices processed. 2128 voxels propagated, 164 dead-end, 4 lost...
7 / 31 slices processed. 2130 voxels propagated, 164 dead-end, 4 lost...
8 / 31 slices processed. 2132 voxels propagated, 164 dead-end, 4 lost...
9 / 31 slices processed. 2515 voxels propagated, 203 dead-end, 4 lost...
10 / 31 slices processed. 2703 voxels propagated, 213 dead-end, 4 lost...
11 / 31 slices processed. 3324 voxels propagated, 266 dead-end, 4 lost...
12 / 31 slices processed. 3626 voxels propagated, 284 dead-end, 4 lost...
13 / 31 slices processed. 4089 voxels propagated, 334 dead-end, 4 lost...
14 / 31 slices processed. 4617 voxels propagated, 384 dead-end, 4 lost...
15 / 31 slices processed. 5155 voxels propagated, 434 dead-end, 4 lost...
16 / 31 slices processed. 5710 voxels propagated, 476 dead-end, 4 lost...
17 / 31 slices processed. 6298 voxels propagated, 506 dead-end, 4 lost...
18 / 31 slices processed. 6535 voxels propagated, 522 dead-end, 4 lost...
19 / 31 slices processed. 7009 voxels propagated, 574 dead-end, 4 lost...
20 / 31 slices processed. 7498 voxels propagated, 617 dead-end, 4 lost...
21 / 31 slices processed. 7627 voxels propagated, 623 dead-end, 4 lost...
22 / 31 slices processed. 7842 voxels propagated, 639 dead-end, 4 lost...
23 / 31 slices processed. 7883 voxels propagated, 642 dead-end, 4 lost...
24 / 31 slices processed. 8195 voxels propagated, 655 dead-end, 4 lost...
25 / 31 slices processed. 8238 voxels propagated, 655 dead-end, 4 lost...
26 / 31 slices processed. 8580 voxels propagated, 673 dead-end, 4 lost...
27 / 31 slices processed. 8702 voxels propagated, 680 dead-end, 4 lost...
28 / 31 slices processed. 8836 voxels propagated, 691 dead-end, 4 lost...
29 / 31 slices processed. 9001 voxels propagated, 700 dead-end, 4 lost...
30 / 31 slices processed. 9026 voxels propagated, 701 dead-end, 4 lost...
31 / 31 slices processed. 9057 voxels propagated, 701 dead-end, 4 lost...
yl::PropagateAlongField::propagate_regions: 9057 propagated, 701 dead-end, 4 lost.
ylPropagateAlongField: writing output regions /tmp/tmpk7onmsblcapsul.nii.gz as Volume of S32...
ylPropagateAlongField: writing destination points
/casa/install/bin/ylRelabelConjunction: 1548 regions in conjunction
input file: /tmp/tmp3vbfs63xcapsul.nii.gz is processed as Volume / S32
output file: /tmp/tmpwjpivn9scapsul.nii.gz is processed as Volume / S32 (data type kept)
minsize: 0, maxsize: 0, nummax: 0
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z: 21
z: 22
z: 23
z: 24
z: 25
z: 26
z: 27
z: 28
z: 29
z: 30
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filtering...
after filtering: 1707 components
yl::IterativeRegionMerger::merge_worst_regions_iteratively:
computing initial region qualities...
1707 regions will be processed.
filling in neighbourhoods...
iteratively merging regions...
Phase 1: processing non-traversing regions
Phase 2: all regions are traversing, merging until goal diameter
end: 78 regions.
.ylUpwindDistance: reading field...
ylUpwindDistance: reading domain volume...
ylUpwindDistance: computing upwind distance...
initializing front...
upwinding...
finished after 9672 iterations (0 NaN results).
ylUpwindDistance: writing output...
.
----------------------------------------------------------------------
Ran 8 tests in 38.207s
OK
euclidean_adv_toward_white.nii.gz: RMS error = 0.067 mm, bias = -0.042 mm (RMS error <= 0.075)
equivolumetric_depth.nii.gz: RMS error = 2.6%, bias = -1.1% (RMS error <= 0.028)
curvature.nii.gz: RMS error = 0.006 mm^{-1}, bias = 0.002 mm^{-1} (RMS error <= 0.067)
laplacian.nii.gz: RMS error = 1.6%, bias = -0.6% (RMS error <= 0.017)
thickness_adv.nii.gz: RMS error = 0.118 mm, bias = -0.090 mm (RMS error <= 0.12)
equidistant_depth_adv.nii.gz: RMS error = 1.6%, bias = -0.3% (RMS error <= 0.017)
thickness_upw.nii.gz: RMS error = 0.261 mm, bias = 0.250 mm (RMS error <= 0.27)
equidistant_depth_upw.nii.gz: RMS error = 2.3%, bias = -0.4% (RMS error <= 0.024)
euclidean_upw_toward_white.nii.gz: RMS error = 0.211 mm, bias = 0.202 mm (RMS error <= 0.22)
================================================================================
SUCCESS (exit code 0)
Finished: SUCCESS
![[Jenkins]](/builds/static/478a8f5f/images/svgs/logo.svg){kind=logo}
