Console Output

Skipping 185 KB.. Full Log

download done
installing demo_data.zip ...
* Import test data


 _Process **Import T1 MRI** started on 2025/06/27 07:19_

filein  : /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3-userimage/tests/test/test_morphologist_capsul/data_unprocessed/sujet01/anatomy/sujet01.ima
fileout : /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3-userimage/tests/test/test_morphologist_capsul/db_morphologist/test/sujet01/t1mri/default_acquisition/sujet01.nii
encoding: Binary
normal  : 0
rescale : 0
format  : 
type    : S16
objtype : 
xdim    : 0
ydim    : 0
zdim    : 0
imin    : default
imax    : default
omin    : default
omax    : default
reading /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3-userimage/tests/test/test_morphologist_capsul/data_unprocessed/sujet01/anatomy/sujet01.ima as Volume / S16...
reading done
convert to Volume / S16
converting data...
convert done
writing /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3-userimage/tests/test/test_morphologist_capsul/db_morphologist/test/sujet01/t1mri/default_acquisition/sujet01.nii...
done
  
 _Process **Import T1 MRI** finished on 2025/06/27 07:19 (1 seconds)_

* create process
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
* Run Morphologist_Capsul to get test results


 _Process **Morphologist CAPSUL iteration** started on 2025/06/27 07:19_

Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
progress: 0.0 % ...

Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
Exception: 'StudyConfig' object has no attribute 'use_freesurfer'
progress: 100.0 % ...

jobs: 28 real, 28 total including barriers

  
 _Process **Morphologist CAPSUL iteration** finished on 2025/06/27 07:19 (2
seconds)_

workflow: /tmp/axon_test_er0s9hc0/tmp/bv_dxj7gcxy.workflow
soma-workflow starting in light mode
** Workflow status OK
Workflow controller initialised
* running Morphologist...
* finished.
* Run Morphologist_Capsul CNN sulci recognition


 _Process **Morphologist CAPSUL iteration** started on 2025/06/27 07:27_

progress: 0.0 % ...

progress: 100.0 % ...

jobs: 6 real, 6 total including barriers

  
 _Process **Morphologist CAPSUL iteration** finished on 2025/06/27 07:27 (1
seconds)_

** Workflow status OK
Reading FGraph version 3.1
Reading FGraph version 3.1
Reading FGraph version 3.1
Reading FGraph version 3.1
Reading FGraph version 3.3
Warning: wrong filename_base in graph, trying to fix it
Reading FGraph version 3.3
Reading FGraph version 3.1
Warning: wrong filename_base in graph, trying to fix it
Reading FGraph version 3.1
Warning: wrong filename_base in graph, trying to fix it
Reading FGraph version 3.1
Reading FGraph version 3.1
Reading FGraph version 3.1
Reading FGraph version 3.1
FAIL
workflow: /tmp/axon_test_er0s9hc0/tmp/bv_dxj7gcxy.workflow
* running CNN...
* finished.
** No failed jobs.
del WorkflowController

======================================================================
FAIL: test_pipeline_results (__main__.TestMorphologistCapsul)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/casa/install/python/morphologist/tests/test_morphologist_capsul.py", line 358, in test_pipeline_results
    self.assertTrue(
AssertionError: False is not true : The content of /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3-userimage/tests/test/test_morphologist_capsul/db_morphologist/test/sujet01/t1mri/default_acquisition/capsul/segmentation/brain_volumes_sujet01.csv in test is different from the reference results /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3-userimage/tests/ref/test_morphologist_pipeline/db_morphologist/test/sujet01/t1mri/default_acquisition/default_analysis/segmentation/brain_volumes_sujet01.csv.

----------------------------------------------------------------------
Ran 1 test in 745.687s

FAILED (failures=1)
RETURNCODE:  False
Exception ignored in: <function TemporaryDirectory.__del__ at 0x714654117e20>
Traceback (most recent call last):
  File "/casa/install/python/brainvisa/data/neuroDiskItems.py", line 2669, in __del__
TypeError: 'NoneType' object is not callable
free(): invalid pointer
timeout: the monitored command dumped core

================================================================================
FAILED with exit code 250
Finished: FAILURE