Console Output
Skipping 750 KB..
Full LogGenerating docs for compound anatomist::SelfSliceable...
Generating docs for compound anatomist::Sliceable...
Generating docs for compound anatomist::SliceableObject...
Generating docs for compound anatomist::GLCaps...
Generating docs for compound anatomist::GLWidgetManager...
Generating docs for compound anatomist::BlockBorderWidget...
Generating docs for compound anatomist::DraggableWrapper...
Generating docs for compound anatomist::ViewState...
Generating docs for compound anatomist::SliceViewState...
Generating docs for compound anatomist::AWindowCreator...
Generating docs for compound anatomist::AWindowFactory...
Generating docs for compound anatomist::AWindowCreatorFunc...
Generating docs for compound anatomist::AWindow...
Generating docs for compound anatomist::AnnotationAction...
Generating docs for compound anatomist::BoxViewSlice...
Generating docs for compound anatomist::ConnectivityMatrixAction...
Generating docs for compound anatomist::ConnectivityMatrixControl...
Generating docs for compound anatomist::OrientationAnnotation...
Generating docs for compound anatomist::Cursor...
Generating docs for compound anatomist::Control3D...
Generating docs for compound anatomist::Select3DControl...
Generating docs for compound anatomist::FlightControl...
Generating docs for compound anatomist::ObliqueControl...
Generating docs for compound anatomist::TransformControl...
Generating docs for compound anatomist::CutControl...
Generating docs for compound anatomist::WindowActions...
Generating docs for compound anatomist::LinkAction...
Generating docs for compound anatomist::MenuAction...
Generating docs for compound anatomist::SelectAction...
Generating docs for compound anatomist::Zoom3DAction...
Generating docs for compound anatomist::Translate3DAction...
Generating docs for compound anatomist::Sync3DAction...
Generating docs for compound anatomist::MovieAction...
Generating docs for compound anatomist::SliceAction...
Generating docs for compound anatomist::DragObjectAction...
Generating docs for compound anatomist::SortMeshesPolygonsAction...
Generating docs for compound anatomist::ObjectStatAction...
Generating docs for compound anatomist::LabelEditAction...
Generating docs for compound anatomist::Trackball...
Generating docs for compound anatomist::ContinuousTrackball...
Generating docs for compound anatomist::KeyFlightAction...
Generating docs for compound anatomist::TrackCutAction...
Generating docs for compound anatomist::CutSliceAction...
Generating docs for compound anatomist::TrackOblique...
Generating docs for compound anatomist::TrackObliqueSlice...
Generating docs for compound anatomist::Transformer...
Generating docs for compound anatomist::TranslaterAction...
Generating docs for compound anatomist::PlanarTransformer...
Generating docs for compound anatomist::ResizerAction...
Generating docs for compound anatomist::GLObjectList...
Generating docs for compound anatomist::GLObjectVector...
Generating docs for compound anatomist::GLMObject...
Generating docs for compound anatomist::ObjectVectorIterator...
Generating docs for compound anatomist::const_ObjectVectorIterator...
Generating docs for compound anatomist::ObjectVector...
Generating docs for compound anatomist::BaseIterator...
Generating docs for compound anatomist::AIterator...
Generating docs for compound anatomist::/casa/host/build/include/anatomist/object/Object.h:415: warning: Unsupported xml/html tag <T> found
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
warning: Inheritance graph for 'anatomist::RegularCommand' not generated, too many nodes (57), threshold is 50. Consider increasing DOT_GRAPH_MAX_NODES.
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Registry.h:80: warning: Found unknown command '\Ref'
/casa/host/build/include/anatomist/processor/Registry.h:60: warning: Found unknown command '\URL'
/casa/host/build/include/anatomist/processor/Registry.h:80: warning: Found unknown command '\Ref'
/casa/host/build/include/anatomist/processor/Registry.h:85: warning: The following parameters of anatomist::Registry::add(const std::string &command, Command::Reader function, const carto::SyntaxSet &syntax) are not documented:
parameter 'function'
parameter 'syntax'
/casa/host/build/include/anatomist/processor/Reader.h:64: warning: The following parameter of anatomist::CommandReader::CommandReader(const std::string &filename, carto::MutexRcPtr< CommandContext > &context) is not documented:
parameter 'context'
[ 92%] Generating AimsCylinder help file ...
/casa/host/build/include/anatomist/constrainteditor/wConstraintEditor.h:61: warning: The following parameter of anatomist::ConstraintEditorWindow::update(const anatomist::Observable *observable, void *arg) is not documented:
parameter 'arg'
[ 92%] Generating AimsDanielssonDist help file ...
MObject...
Generating docs for compound anatomist::Fusion2D...
Generating docs for compound anatomist::Fusion3D...
Generating docs for compound anatomist::ObjectListIterator...
Generating docs for compound anatomist::const_ObjectListIterator...
Generating docs for compound anatomist::ObjectList...
Generating docs for compound anatomist::Slice...
Generating docs for compound anatomist::AVolumeBase...
Generating docs for compound anatomist::AVolume...
Generating docs for compound anatomist::AVolumeView...
Generating docs for compound anatomist::CommandContext...
Generating docs for compound anatomist::ErrorMessage...
Generating docs for compound anatomist::OutputEvent...
Generating docs for compound anatomist::OutputEventFilter...
Generating docs for compound anatomist::EventHandler...
Generating docs for compound anatomist::APipeReader...
Generating docs for compound anatomist::Unserializer...
Generating docs for compound anatomist::CommandServer...
Generating docs for compound anatomist::Command...
Generating docs for compound anatomist::RegularCommand...
Generating docs for compound anatomist::SerializingCommand...
Generating docs for compound anatomist::WaitCommand...
Generating docs for compound anatomist::Processor...
Generating docs for nested compound anatomist::Processor::Memo...
Generating docs for compound anatomist::Registry...
Generating docs for compound anatomist::CommandReader...
Generating docs for compound anatomist::CommandWriter...
Generating docs for compound anatomist::Serializer...
Generating docs for compound anatomist::Fusion2dMethod...
Generating docs for compound anatomist::Fusion3dMethod...
Generating docs for compound anatomist::PlanarFusion3dMethod...
Generating docs for compound anatomist::FusionTextureMethod...
Generating docs for compound anatomist::FusionMultiTextureMethod...
Generating docs for compound anatomist::FusionCutMeshMethod...
Generating docs for compound anatomist::Fusion2DMeshMethod...
Generating docs for compound anatomist::FusionSliceMethod...
Generating docs for compound anatomist::FusionRGBAVolumeMethod...
Generating docs for compound anatomist::FusionClipMethod...
Generating docs for compound anatomist::FusionTesselationMethod...
Generating docs for compound anatomist::ConnectivityMatrixFusionMethod...
Generating docs for compound anatomist::VectorFieldFusionMethod...
Generating docs for compound anatomist::FusionMethod...
Generating docs for compound anatomist::FusionFactory...
Generating docs for compound anatomist::StdModule...
Generating docs for compound anatomist::AConnectivityMatrix...
Generating docs for compound anatomist::ASparseMatrix...
Generating docs for compound anatomist::GLItem...
Generating docs for compound anatomist::Primitive...
Generating docs for compound anatomist::GLList...
Generating docs for compound anatomist::GLTexture...
Generating docs for compound anatomist::GLItemList...
Generating docs for compound anatomist::GLNoExecItemList...
Generating docs for compound anatomist::ConstraintEditorWindow...
Generating docs for compound anatomist::NodeSelectionAction...
Generating docs for compound anatomist::NodeSelectionControl...
Generating docs for compound anatomist::HierarchyEditor...
Generating docs for compound anatomist::ErpReader...
Generating docs for compound anatomist::AInterpolerMethod...
Generating docs for compound anatomist::AInterpoler...
Generating docs for compound anatomist::ALandmarkFactory...
Generating docs for compound anatomist::PlaneFusionMethod...
Generating docs for compound anatomist::CylinderFusionMethod...
Generating docs for compound anatomist::ASurfMatchMethod...
Generating docs for compound anatomist::ASurfMatcher...
Generating docs for compound anatomist::AnaSurfMatch...
Generating docs for compound anatomist::SurfpaintModule...
Generating docs for compound anatomist::SurfpaintTools...
Generating docs for compound anatomist::SurfpaintToolsAction...
Generating docs for compound anatomist::SurfpaintToolsControl...
Generating docs for compound anatomist::VolRenderFusionMethod...
Generating docs for compound anatomist::Vo[ 92%] Generating AimsCompareSPMtToPrimalSketch help file ...
[ 92%] Generating AimsElevationMap help file ...
/casa/host/build/include/anatomist/action/levelsetaction.h:64: warning: The following parameter of anatomist::RoiLevelSetActionSharedData::update(const Observable *observable, void *arg) is not documented:
parameter 'arg'
/casa/host/build/include/anatomist/action/paintaction.h:124: warning: The following parameters of anatomist::PaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm)=0 are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:177: warning: The following parameters of anatomist::PointPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:200: warning: The following parameters of anatomist::SquarePaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:224: warning: The following parameters of anatomist::DiskPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:259: warning: The following parameters of anatomist::BallPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented:
parameter 'win'
parameter 'transf'
parameter 'point'
parameter 'originalLabel'
parameter 'finalLabel'
parameter 'brushSize'
parameter 'lineMode'
parameter 'volumeOfLabels'
parameter 'deltaModifications'
parameter 'changes'
parameter 'voxelSize'
parameter 'line'
parameter 'replace'
parameter 'mm'
/casa/host/build/include/anatomist/action/paintaction.h:296: warning: The following parameter of anatomist::PaintActionSharedData::update(const Observable *observable, void *arg) is not documented:
parameter 'arg'
/casa/host/build/include/anatomist/action/roimanagementaction.h:203: warning: The following parameter of anatomist::RoiManagementActionSharedData::update(const Observable *observable, void *arg) is not documented:
parameter 'arg'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'ref' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'obj' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'refId' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'unser' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cGetConnThres.h:68: warning: The following parameters of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0) are not documented:
parameter 'image'
parameter 'requestid'
parameter 'context'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'ref' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'obj' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'refId' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'unser' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0)
/casa/host/build/include/anatomist/commands/cSetConnThres.h:66: warning: The following parameters of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0) are not documented:
parameter 'image'
parameter 'assignLowThreshold'
parameter 'lowThres'
parameter 'assignHighThreshold'
parameter 'highThres'
parameter 'context'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt'
/casa/host/build/include/anatomist/action/dynsegmentaction.h:65: warning: The following parameter of anatomist::RoiDynSegmentAction::update(const anatomist::Observable *observable, void *arg) is not documented:
parameter 'arg'
lRenderShaderFusionMethod...
Generating docs for compound anatomist::VolRenderModule...
Generating docs for compound anatomist::VolRender...
Generating docs for compound anatomist::VolRenderShader...
Generating docs for compound anatomist::ProfileModule...
Generating docs for compound anatomist::RoiLevelSetActionSharedData...
Generating docs for compound anatomist::RoiLevelSetAction...
Generating docs for compound anatomist::RoiLabelNamingAction...
Generating docs for compound anatomist::ChangesItem...
Generating docs for compound anatomist::ChangedBucketsItem...
Generating docs for compound anatomist::RoiChangeProcessor...
Generating docs for compound anatomist::PaintStrategy...
Generating docs for compound anatomist::PointPaintStrategy...
Generating docs for compound anatomist::SquarePaintStrategy...
Generating docs for compound anatomist::DiskPaintStrategy...
Generating docs for compound anatomist::BallPaintStrategy...
Generating docs for compound anatomist::PaintActionSharedData...
Generating docs for compound anatomist::PaintAction...
Generating docs for compound anatomist::RoiBlobSegmentationAction...
Generating docs for compound anatomist::PaintControl...
Generating docs for compound anatomist::RoiLevelSetControl...
Generating docs for compound anatomist::RoiLabelNamingControl...
Generating docs for compound anatomist::RoiManagementActionSharedData...
Generating docs for compound anatomist::RoiManagementAction...
Generating docs for compound anatomist::RoiBaseModule...
Generating docs for compound anatomist::CreateGraphCommand...
Generating docs for compound anatomist::GetConnThresholdCommand...
Generating docs for compound anatomist::SetConnThresholdCommand...
Generating docs for compound anatomist::AddNodeCommand...
Generating docs for compound anatomist::PaintParamsCommand...
Generating docs for compound anatomist::RoiDynSegmentAction...
Generating docs for compound anatomist::RoiMorphoMathAction...
Generating docs for compound anatomist::RoiDynSegmentControl...
Generating docs for compound anatomist::RoiAlgoModule...
Generating docs for compound anatomist::HistogramModule...
Generating docs for namespace anatomist::internal
Generating docs for compound anatomist::internal::ColorTraitsType...
Generating docs for compound anatomist::internal::PaletteWinExtensionActions...
Generating docs for compound anatomist::internal::VectorFieldCoordSpinBox...
Generating docs for compound anatomist::internal::AGraphicsView...
Generating docs for compound anatomist::internal::AGraphicsScene...
Generating docs for compound anatomist::internal::TransformerActionData...
Generating docs for compound anatomist::internal::NoDragSlider...
Generating docs for compound anatomist::internal::CommandReader_Bridge...
Generating docs for namespace carto
Generating docs for compound carto::GLWidget...
Generating docs for namespace Vr
Generating docs for compound Vr::Creator...
Generating docs for compound Vr::CubeZBuffer...
Generating docs for compound Vr::MIPShader...
Generating docs for compound Vr::MPVRShader...
Generating docs for compound Vr::RfmtShader...
Generating docs for compound Vr::Shader...
Generating docs for compound Vr::ShaderFactory...
Generating docs for compound Vr::Slicing...
Generating docs for compound Vr::SumShader...
Generating docs for compound Vr::Vector3d...
Generating docs for compound Vr::VRShader...
Generating docs for compound Vr::VrSingleton...
Generating graph info page...
Generating directory documentation...
Generating dependency graph for directory anatomist/action
Generating dependency graph for directory anatomist
Generating dependency graph for directory anatomist/application
Generating dependency graph for directory anatomist/browser
Generating dependency graph for directory anatomist/bucket
Generating dependency graph for directory anatomist/color
Generating dependency graph for directory anatomist/commands
Generating dependency graph for directory anatomist/constrainteditor
Generating dependency graph for directory anatomist/control
Generating dependency graph for directory anatomist/controler
Gener/casa/host/build/include/anatomist/application/anatomist_doc.h:41: warning: image file anatomist.png is not found in IMAGE_PATH: assuming external image.
/casa/host/build/include/anatomist/application/anatomist_doc.h:41: warning: image file anatomist.png is not found in IMAGE_PATH: assuming external image.
[ 92%] Generating AimsFoldArgAtt help file ...
[ 92%] Generating AimsFrontDistanceMap help file ...
ating dependency graph for directory anatomist/erpio
Generating dependency graph for directory anatomist/graph
Generating dependency graph for directory anatomist/hierarchy
Generating dependency graph for directory anatomist/interface
Generating dependency graph for directory anatomist/interpoler
Generating dependency graph for directory anatomist/landmark
Generating dependency graph for directory anatomist/mobject
Generating dependency graph for directory anatomist/module
Generating dependency graph for directory anatomist/object
Generating dependency graph for directory anatomist/processor
Generating dependency graph for directory anatomist/reference
Generating dependency graph for directory anatomist/selection
Generating dependency graph for directory anatomist/sparsematrix
Generating dependency graph for directory anatomist/stdmod
Generating dependency graph for directory anatomist/surface
Generating dependency graph for directory anatomist/surfmatcher
Generating dependency graph for directory anatomist/volume
Generating dependency graph for directory anatomist/window
Generating dependency graph for directory anatomist/window3D
Generating dependency graph for directory anatomist/winhisto
Generating dependency graph for directory anatomist/winprof
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating graphical class hierarchy...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
writing tag file...
Running plantuml with JAVA...
Running dot...
lookup cache used 18411/65536 hits=112114 misses=22457
finished...
[ 92%] Built target anatomist-doxygen
[ 92%] Generating AimsGaussianSmoothing help file ...
[ 92%] Generating AimsGaussianSmoothing1d help file ...
[ 92%] Built target primatologist-gpl-doxygen
[ 92%] Generating AimsGraphMesh help file ...
[ 92%] Generating AimsGraphTransferLabels help file ...
[ 92%] Built target constellation-doxygen
[ 92%] Generating AimsGTMDump help file ...
[ 92%] Generating AimsHippocampicReferential help file ...
[ 92%] Generating AimsIcmSpaghetti help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,221::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,221::INFO::Found '3' process(es) in 'deepsulci.sulci_labeling.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,221::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,222::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,223::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.training.SulciDeepTraining'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,224::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,224::INFO::process: '3' files written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,224::INFO::Writing module 'sulci_labeling' index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,224::INFO::Index: an index has been written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling.
[ 92%] Generating AimsIcmSpaghettiN help file ...
[ 92%] Generating AimsIcosaList help file ...
[ 92%] Built target cortical_surface-doxygen
[ 92%] Generating AimsImageGLBlobStats help file ...
[ 92%] Built target aims-free-doc
[ 92%] Generating AimsImagePrimalSketch help file ...
[ 92%] Create "share/doc/5.2"
[ 92%] Built target anatomist-free-devdoc
[ 92%] Generating AimsImageScaleSpace help file ...
[ 92%] Generating AimsImageSmoothing help file ...
[ 92%] Generating AimsParameterize2DImageDomain help file ...
[ 92%] Generating AimsInflate help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:54,459::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
[ 92%] Built target pyanatomist-doxygen
[ 92%] Generating AimsLightenAtlas help file ...
[ 92%] Generating AimsMask help file ...
[ 92%] Create "share/doc/5.2"
[ 92%] Generating AimsMeanCurvFlow help file ...
[ 92%] Built target highres-cortex-devdoc
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:54,517::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:54,579::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:54,579::INFO::Summary: '14' files written for module 'capsul'.
[ 92%] Generating AimsMedianSmoothing help file ...
[ 92%] Create "share/doc/5.2"
[ 92%] Generating AimsSmoothing help file ...
[ 92%] Built target sulci-nonfree-devdoc
[ 92%] Create "share/doc/5.2"
[ 92%] Built target brainrat-private-devdoc
[ 92%] Generating AimsMerge help file ...
[ 92%] Generating AimsMesh help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:55,371::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:55,371::INFO::Found '40' process(es) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:55,371::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
[ 92%] Generating AimsMesh2Ascii help file ...
[ 92%] Generating AimsMesh2SSGraph help file ...
[ 92%] Generating AimsMesh2Sphere help file ...
[ 92%] Generating AimsMeshAverage help file ...
[ 92%] Built target bioprocessing-doxygen
[ 92%] Generating AimsMeshBlobExtract help file ...
[ 92%] Create "share/doc/5.2"
[ 92%] Generating AimsMeshBrain help file ...
[ 92%] Built target primatologist-gpl-devdoc
[ 92%] Generating AimsMeshCC2Arg help file ...
[ 92%] Create "share/doc/5.2"
[ 92%] Built target constellation-nonfree-devdoc
[ 92%] Create "share/doc/5.2"
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:56,035::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
[ 92%] Built target cortical_surface-nonfree-devdoc
[ 92%] Generating AimsMeshCheckClosed help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:56,078::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:56,078::INFO::Summary: '14' files written for module 'capsul'.
[ 92%] Generating AimsMeshCleaner help file ...
[ 92%] Generating AimsMeshConnectedComponent help file ...
[ 92%] Built target anatomist-free-doc
[ 92%] Built target highres-cortex-doc
[ 92%] Built target sulci-nonfree-doc
[ 92%] Built target brainrat-private-doc
[ 92%] Built target primatologist-gpl-doc
[ 92%] Built target constellation-nonfree-doc
[ 92%] Generating AimsMeshCurvature help file ...
[ 92%] Built target cortical_surface-nonfree-doc
[ 92%] Generating AimsMeshDecimation help file ...
[ 92%] Generating AimsMeshDistance help file ...
[ 92%] Create "share/doc/5.2"
[ 92%] Built target anatomist-gpl-devdoc
[ 92%] Generating AimsMeshGeodesicDepth help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:56,841::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:56,841::INFO::Found '40' process(es) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:56,842::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
[ 92%] Create "share/doc/5.2"
[ 92%] Built target bioprocessing-devdoc
[ 92%] Generating AimsMeshLineMeasurement help file ...
[ 92%] Generating AimsMeshParcellation2VolumeParcellation help file ...
[ 92%] Generating AimsMeshSmoothing help file ...
[ 92%] Generating AimsMeshWhite help file ...
[ 92%] Generating AimsMIRegister help file ...
[ 92%] Generating AimsMoment help file ...
[ 92%] Built target anatomist-gpl-doc
[ 92%] Generating AimsMorphoMath help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:57,870::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
[ 92%] Generating AimsNormWithRegion help file ...
[ 92%] Built target bioprocessing-doc
[ 92%] Generating AimsParamCorrectDti help file ...
[ 92%] Generating AimsPCAfilter help file ...
[ 92%] Generating AimsPCAloc help file ...
[ 92%] Generating AimsPCAloc2 help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,552::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,562::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
[ 92%] Generating AimsRefineMesh help file ...
[ 92%] Generating AimsRegisterBMEstimate help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,618::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,626::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,665::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,733::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,749::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,786::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,800::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,809::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
[ 92%] Generating AimsRegisterFFDFromCoordImages help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,817::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
[ 92%] Generating AimsRegisterFFDApply help file ...
[ 92%] Generating AimsReplaceLevel help file ...
[ 92%] Generating AimsSegmentsToMesh help file ...
[ 92%] Generating AimsSNR help file ...
[ 92%] Generating AimsSphereDistribution help file ...
[ 92%] Generating AimsSplitArray help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,778::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,800::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,820::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,820::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,820::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,822::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,823::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,824::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,826::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,828::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,828::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,830::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,830::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,831::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,832::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,833::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,835::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,842::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,842::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,843::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,844::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,844::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,845::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,846::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,846::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,847::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,848::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,848::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,849::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,849::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,850::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,851::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,852::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,852::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,853::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,854::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,855::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,856::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,857::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,858::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,859::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,865::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,867::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,867::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,868::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,869::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,869::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,869::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,977::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,982::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,034::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,041::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,078::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,133::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,143::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,166::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
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[ 92%] Generating AimsTalairachTransform help file ...
generating CAPSUL processes docs...
['/usr/bin/python3.10', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist', '--schema']
loading pickled environment... done
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,958::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,958::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline.
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,971::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,971::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,972::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,974::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,974::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,975::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,975::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,976::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,976::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,977::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,978::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,979::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,979::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,980::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,980::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
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[autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, sulpated.rst
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,982::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,984::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,990::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,991::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,992::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process.
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,992::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul.
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['/usr/bin/python3.10', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist', '--schema']
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/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
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[ 92%] Generating VipGetHead help file ...
[ 92%] Generating VipGreyStatFromClassif help file ...
[ 92%] Generating VipGreyWhiteClassif help file ...
[ 92%] Generating VipHistoAnalysis help file ...
[ 92%] Generating VipHomotopic help file ...
[ 92%] Generating VipHomotopicSnake help file ...
[ 92%] Generating VipHyste help file ...
[ 92%] Generating VipLabelArg help file ...
[ 92%] Generating VipLabelContour help file ...
[ 92%] Generating VipLabelMatching help file ...
[ 92%] Generating VipLabelOverlap help file ...
[ 92%] Generating VipListLabel help file ...
[ 92%] Generating VipMatching help file ...
[ 92%] Generating VipMerge help file ...
[ 92%] Generating VipMinimizeInformation help file ...
[ 92%] Generating VipMoment help file ...
[ 92%] Generating VipOpenFold help file ...
[ 92%] Generating VipOpening help file ...
[ 92%] Generating VipPca help file ...
[ 92%] Generating VipSetPointValue help file ...
[ 92%] Generating VipSkeleton help file ...
[ 92%] Generating VipSplitBrain help file ...
[ 92%] Generating VipSwapEndian help file ...
[ 92%] Generating VipT1BiasCorrection help file ...
[ 92%] Generating VipTalairachCoordinates help file ...
[ 92%] Generating VipTalairachTransform help file ...
[ 92%] Generating VipTopoClassifMeaning help file ...
[ 92%] Generating VipTopoClassification help file ...
[ 92%] Generating vip_test_well_composed_configurations help file ...
[ 92%] Generating vip_test_well_composed_topology help file ...
[ 92%] Generating readFolds help file ...
[ 92%] Generating siChangeModels help file ...
[ 92%] Generating siCopyNames help file ...
[ 92%] Generating siDivNameList help file ...
[ 92%] Generating siDomTrain help file ...
[ 92%] Generating siEnergy help file ...
[ 92%] Generating siError help file ...
[ 92%] Generating AimsTMStarget help file ...
[ 92%] Generating siErrorStats help file ...
[ 92%] Generating AimsSumFrame help file ...
[ 92%] Generating AimsSulcusSPAM help file ...
[ 92%] Generating AimsSubTensor help file ...
[ 92%] Generating AimsSubSampling help file ...
[ 92%] Generating siFlip help file ...
[ 92%] Generating siFunctionalGraphs help file ...
[ 92%] Generating siGraph2Label help file ...
[ 92%] Generating sigraph-config help file ...
[ 92%] Generating siLearn help file ...
[ 92%] Generating siLyxErrors help file ...
[ 92%] Generating siMakeColoredHierarchy help file ...
[ 92%] Generating siMergeModels help file ...
[ 92%] Generating siMakeParcellationHierarchy help file ...
[ 92%] Generating siMakeModel help file ...
[ 92%] Generating siMeshSulciProjection help file ...
[ 92%] Generating siMeshSulciOperture help file ...
[ 92%] Generating siMkModelEdges help file ...
[ 92%] Generating siMorpho help file ...
[ 92%] Generating siMultilabelCompare help file ...
[ 92%] Generating siPIDcommand help file ...
[ 92%] Generating siParcellation help file ...
[ 92%] Generating siPutTextureInModel help file ...
[ 92%] Generating siRelax help file ...
[ 92%] Generating siRevert help file ...
[ 92%] Generating siSulcalParcellation help file ...
[ 92%] Generating siTestModels help file ...
[ 92%] Generating siTriangModel help file ...
[ 92%] Generating siTryGauss help file ...
[ 92%] Generating AimsReadDpy help file ...
[ 92%] Generating bioReadDpy help file ...
[ 92%] Generating AimsAdaptiveSelVoxel help file ...
[ 92%] Generating AimsAxialProjection help file ...
[ 92%] Generating AimsBorderInfo help file ...
[ 92%] Generating AimsBorderGenerate help file ...
[ 92%] Generating AimsCenterSlices help file ...
[ 92%] Generating AimsFeaturesExtraction help file ...
[ 92%] Generating AimsFovAdapt help file ...
[ 92%] Generating AimsGL2Activity help file ...
[ 92%] Generating AimsIndividStackSlices help file ...
[ 92%] Generating AimsInterSliceNormalize help file ...
[ 92%] Generating AimsManualRegistration help file ...
[ 92%] Generating AimsMidPlaneAlign help file ...
[ 92%] Generating bioDetectSlices help file ...
[ 92%] Generating bioModelClassify help file ...
[ 92%] Generating bioModelGenerate help file ...
[ 92%] Generating AimsAmyloidDensity help file ...
[ 92%] Generating AimsAffineRegister help file ...
[ 92%] Generating AimsAmyloidLoadAvgDistNeigh help file ...
[ 92%] Generating AimsAmyloidLoadInvSurfVor help file ...
[ 92%] Generating AimsAmyloidDetection help file ...
[ 92%] Generating AimsAmyloidFiltering help file ...
[ 92%] Generating AimsAmyloidMRIDetection help file ...
[ 92%] Generating AimsAreaNbConnectCompRatio help file ...
[ 92%] Generating AimsBinaryBoundingBox help file ...
[ 92%] Generating AimsBorderCrop help file ...
[ 92%] Generating AimsBorderLineProj help file ...
[ 92%] Generating AimsBinaryBorder help file ...
[ 92%] Generating AimsBoundingBoxCalculation help file ...
[ 92%] Generating AimsBoundingBoxExtraction help file ...
[ 92%] Generating AimsComponentFeaturesProcess help file ...
[ 92%] Generating AimsComponentFeaturesVisualize help file ...
[ 92%] Generating AimsComponentFeaturesMapGenerate help file ...
[ 92%] Generating AimsCorrectImages help file ...
[ 92%] Generating AimsCreateFieldsFromMotion help file ...
[ 92%] Generating AimsChannelProcess help file ...
[ 92%] Generating AimsEntropicThresholding help file ...
[ 92%] Generating AimsEqualizer help file ...
[ 92%] Generating AimsFovCentering help file ...
[ 92%] Generating AimsGenerateVolume help file ...
[ 92%] Generating AimsGridCalibrate help file ...
[ 92%] Generating AimsGridGenerate help file ...
[ 92%] Generating AimsIndexCluster help file ...
[ 92%] Generating AimsHeightFiltering help file ...
[ 92%] Generating AimsIndividSlices help file ...
[ 92%] Generating AimsInterlaceVolumes help file ...
[ 92%] Generating AimsInterpolate help file ...
[ 92%] Generating AimsLabelReorder help file ...
[ 92%] Generating AimsMosaic help file ...
[ 92%] Generating AimsMultiRecal help file ...
[ 92%] Generating AimsOverlapInfo help file ...
[ 92%] Generating AimsRebuildComp help file ...
[ 92%] Generating AimsResampleFromFieldsData help file ...
[ 92%] Generating AimsRgbToHsv help file ...
[ 92%] Generating AimsRoiOverlap help file ...
[ 92%] Generating AimsSamplingInfo help file ...
[ 92%] Generating AimsSegment2Modes help file ...
[ 92%] Generating AimsSeparateComp help file ...
[ 92%] Generating AimsStereologySampling help file ...
[ 92%] Generating AimsStereotaxy help file ...
[ 92%] Generating AimsSubSamplingConservative help file ...
[ 92%] Generating AimsWatershed help file ...
[ 92%] Generating AimsSeededWatershed help file ...
[ 92%] Generating bioCellBoundingBoxesGenerate help file ...
[ 92%] Generating bioCellEvaluate help file ...
[ 92%] Generating bioClusterStatistics help file ...
[ 92%] Generating bioComponentConnexe help file ...
[ 92%] Generating AimsMidPlaneMask help file ...
[ 92%] Generating bioCorrectMissingLabels help file ...
[ 92%] Generating bioExtractAmyloidLoad help file ...
[ 92%] Generating bioExtractDice help file ...
[ 92%] Generating bioFindCellSeeds help file ...
[ 92%] Generating bioMacGetSingleBrain help file ...
[ 92%] Generating bioPrepareData4DlIndiv help file ...
[ 92%] Generating bioRenumberConnectComp help file ...
[ 92%] Generating bioStatDominanceAppli help file ...
[ 92%] Generating bioVoxelFeatures help file ...
[ 92%] Generating AimsAdaptiveGaussianSmoothing help file ...
[ 92%] Generating AimsExtremaMap help file ...
[ 92%] Generating AimsRegionGrowingExtrema help file ...
[ 92%] Generating AimsSigmaImageCalculate help file ...
[ 92%] Generating bioVoxelWiseStatistics help file ...
[ 92%] Generating AimsSegmentationEM help file ...
[ 92%] Generating AimsSelectGradPoints help file ...
[ 92%] Generating AimsRegisterQNEstimate help file ...
[ 92%] Generating bioKMeans help file ...
[ 92%] Generating AimsSparseMatrixSmoothing help file ...
[ 92%] Generating constelBundlesFiltering help file ...
[ 92%] Generating constelConnectionDensityTexture help file ...
[ 92%] Generating constelConnectivityMatrix help file ...
[ 92%] Generating constelFibersLengths help file ...
[ 92%] Generating constelMeanConnectivityProfileFromMatrix help file ...
[ 92%] Generating constelSelectBundlesFromNames help file ...
[ 92%] Generating constelSelectFibersFromMesh help file ...
[ 92%] Generating AimsConstraintCleaner help file ...
[ 92%] Generating AimsGyriStuff help file ...
[ 92%] Generating AimsCorticalReferential help file ...
[ 92%] Generating AimsMeshIsoLine help file ...
[ 92%] Generating AimsCorticalThickness help file ...
[ 92%] Generating AimsFunctionProjection help file ...
[ 96%] Generating AimsMeshMedianSurface help file ...
[ 96%] Generating AimsCoordinateGridMesh help file ...
[ 96%] Generating AimsCoordinatesTextureToMesh help file ...
[ 96%] Generating AimsCoordinatesToTexture help file ...
[ 96%] Generating AimsFlattenCortex help file ...
[ 96%] Generating AimsParameterizeGyri help file ...
[ 96%] Generating AimsParameterizeSulcus help file ...
[ 96%] Generating AimsPlotOnSPhericalAtlas help file ...
[ 96%] Generating AimsSulcusCorticalSnake help file ...
[ 96%] Generating AimsTextureToAtlas help file ...
[ 96%] Generating surfTexActivationSimulation help file ...
[ 96%] Generating surfStructuralAnalysis help file ...
[ 96%] Generating AimsCheck2DCoordinates help file ...
[ 96%] Generating AimsMeshToAtlas help file ...
[ 96%] Generating AimsSulcusNormalizeDepthProfile help file ...
[ 96%] Generating AimsConformalMapping help file ...
[ 96%] Generating AimsMeshCoordinatesToDecimated help file ...
[ 96%] Generating AimsExtractGyrus help file ...
[ 96%] Generating AimsMeshToMeshPoint help file ...
[ 96%] Generating AimsPlotCoordinatesOnMesh help file ...
[ 96%] Generating PlotFociForValidation help file ...
[ 96%] Generating AimsCoordinatesToIndex help file ...
[ 96%] Generating AimsGyriRegularization help file ...
[ 96%] Generating AimsGroupGyri help file ...
[ 96%] Generating AimsGeodesicPath help file ...
[ 96%] Generating AimsInterpolateVolumeToSurface help file ...
[ 96%] Generating AimsSulcalLines help file ...
[ 96%] Generating AimsEdgeExtract help file ...
[ 96%] Generating AimsTextureCompare help file ...
[ 96%] Generating AimsMIBucketRegister help file ...
[ 96%] Generating AimsExactDepthArea help file ...
[ 96%] Generating AimsMeshMatching help file ...
[ 96%] Generating AimsMaskContour help file ...
[ 96%] Generating AimsMergeFFDLabels help file ...
[ 96%] Generating documentation commands help index ...
[100%] Built target bv_commands_doc
[100%] Create "share/doc/2.6"
[100%] Create "share/doc/5.2"
[100%] Built target capsul-devdoc
[100%] Built target morpho-deepsulci-devdoc
[100%] Create "share/doc/5.2"
[100%] Built target capsul-doc
[100%] Built target morphologist-gpl-devdoc
[100%] Built target morpho-deepsulci-doc
[100%] Create "share/doc/5.2"
[100%] Built target devdoc
[100%] Built target morphologist-gpl-usrdoc
[100%] Built target usrdoc
[100%] Built target morphologist-gpl-doc
Generating BrainVISA processes documentation
[100%] Built target bv_ontology_doc
[100%] Built target bv_doc_index
[100%] Built target axon-doc
[100%] Built target doc
bv_maker summary:
OK step doc: /casa/host/build, started: 2025/06/26 06:12, stopped: 2025/06/26 06:15
All went good.
Finished: SUCCESS
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