Started Running as brainvisa ---------------------------------------- $ /usr/bin/python3 /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/src/development/casa-distro/master/bin/casa_distro bv_maker name=cea-master-5.3 -- doc ---------------------------------------- Building docs in directory: /casa/host/build $ make -j12 -l12 doc [ 0%] Create "share/doc/3.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/0.0" [ 0%] Create "share/doc/5.3" [ 0%] Create "share/doc/3.3" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/." [ 0%] Create "share/doc/2.6" [ 0%] Create "share/doc/3.0" [ 0%] Create "share/doc/5.2" [ 0%] Built target disco-usrdoc [ 0%] Built target casa-distro-usrdoc [ 0%] Built target soma-base-usrdoc [ 0%] Built target soma-workflow-usrdoc [ 0%] Built target neuro-forge-usrdoc [ 0%] Built target brainvisa-share-usrdoc [ 0%] Built target Brainvisa-usrdoc [ 0%] Built target disco-devdoc [ 0%] Built target soma-io-usrdoc [ 0%] Built target populse-db-usrdoc [ 0%] Built target capsul-usrdoc [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Built target aims-gpl-usrdoc [ 0%] Built target anatomist-gpl-usrdoc [ 0%] Built target brainvisa-spm-usrdoc [ 0%] Built target morphologist-nonfree-usrdoc [ 0%] Built target highres-cortex-usrdoc [ 0%] Built target sulci-nonfree-usrdoc [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Built target bioprocessing-usrdoc [ 0%] Built target morpho-deepsulci-usrdoc [ 0%] Built target brainrat-private-usrdoc [ 0%] Built target constellation-gpl-usrdoc [ 0%] Built target primatologist-gpl-usrdoc [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/5.2" [ 0%] Create "share/doc/." [ 0%] Create "share/doc/5.2" [ 0%] Built target cortical_surface-nonfree-usrdoc [ 0%] Built target constellation-nonfree-usrdoc [ 0%] Built target cortical_surface-gpl-usrdoc [ 0%] Built target brainvisa_freesurfer-usrdoc [ 0%] Built target Brainvisa-devdoc [ 0%] Create "share/doc/0.0" [ 0%] Create "share/doc/6.0" [ 0%] Create "share/doc/5.2" [ 0%] Built target neuro-forge-devdoc [ 0%] Built target brainvisa-cmake-devdoc [ 0%] Built target brainvisa-share-devdoc [ 4%] Built target cartobase-doxygen Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 Running Sphinx v6.2.1 loading pickled environment... loading pickled environment... done loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... done loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... loading intersphinx inventory from https://docs.enthought.com/traits/objects.inv... building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../../share/doc/soma-workflow-3.3/sphinx. [autosummary] generating autosummary for: api.rst, index.rst loading pickled environment... done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv... loading intersphinx inventory from https://docs.python.org/2.7/objects.inv... loading pickled environment... loading pickled environment... loading pickled environment... done loading intersphinx inventory from /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/build/share/doc/soma-base-5.2/sphinx/objects.inv... loading intersphinx inventory from /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/build/share/doc/pyaims-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /volatile/a-sac-ns-brainvisa/bbi_nightly/cea-master-5.3/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv... loading intersphinx inventory from https://docs.python.org/2.7/objects.inv... loading pickled environment... loading pickled environment... loading pickled environment... done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... done loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv... loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... [ 4%] Built target soma-workflow-sphinx done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... done [autosummary] generating autosummary for: bv_command.rst, bv_command_help.rst, casa_distro_admin_command.rst, casa_distro_admin_command_help.rst, casa_distro_command.rst, casa_distro_command_help.rst, concepts.rst, developer.rst, index.rst, nightly.rst, technical.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 3 source files that are out of date updating environment: 0 added, 6 changed, 0 removed reading sources... [ 16%] bv_command reading sources... [ 33%] bv_command_help reading sources... [ 50%] casa_distro_admin_command reading sources... [ 66%] casa_distro_admin_command_help [autosummary] generating autosummary for: index.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../share/doc/soma-io-5.2. [autosummary] generating autosummary for: index.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../share/doc/brainrat-gpl-5.2/user_doc. Running Sphinx v6.2.1 [autosummary] generating autosummary for: aims_config.rst, aims_io.rst, changelog.rst, coordinates_systems.rst, formats.rst, index.rst, spm_format.rst, tutorial.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../../share/doc/aimsdata-5.2/user_doc. reading sources... [ 83%] casa_distro_command building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../../share/doc/anatomist-5.2/user_doc. [autosummary] generating autosummary for: axon_manual.rst, axon_manual2.rst, changelog.rst, connectomist_tutorial.rst, index.rst, morphologist_tutorial.rst, tutorial.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. [autosummary] generating autosummary for: index.rst build succeeded, 1 warning. The HTML pages are in ../../share/doc/axon-5.2/user_doc. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../../share/doc/morphologist-ui-5.2. WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). [NbConvertApp] Converting notebook /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb.in to notebook reading sources... [100%] casa_distro_command_help [ 4%] Built target soma-io-sphinx building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../../share/doc/soma-base-5.3/sphinx. [ 4%] Built target brainrat-gpl-usrsphinx loading pickled environment... done building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] populse_db [ 4%] Generating ../../../../share/doc/graph-5.2/doxygen/index.html ../../../src/development/casa-distro/master/doc/source/bv_command_help.rst:13: WARNING: Option list ends without a blank line; unexpected unindent. /casa/host/src/development/casa-distro/master/doc/source/bv_command_help.rst:13: WARNING: Option list ends without a blank line; unexpected unindent. /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:40: WARNING: duplicate label casa-distro-admin-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:57: WARNING: duplicate label casa-distro-admin-singularity-deb-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:83: WARNING: duplicate label casa-distro-admin-create-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:204: WARNING: duplicate label casa-distro-admin-publish-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:245: WARNING: duplicate label casa-distro-admin-create-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:368: WARNING: duplicate label casa-distro-admin-publish-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:394: WARNING: duplicate label casa-distro-admin-bbi-daily-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:530: WARNING: duplicate label casa-distro-admin-local-install-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:576: WARNING: duplicate label casa-distro-admin-convert-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:63: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:117: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:219: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:263: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:383: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:456: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:537: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:580: WARNING: duplicate label casa_distro_admin_command:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:40: WARNING: duplicate label casa-distro-admin-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:57: WARNING: duplicate label casa-distro-admin-singularity-deb-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:83: WARNING: duplicate label casa-distro-admin-create-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:204: WARNING: duplicate label casa-distro-admin-publish-base-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:245: WARNING: duplicate label casa-distro-admin-create-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:368: WARNING: duplicate label casa-distro-admin-publish-user-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:394: WARNING: duplicate label casa-distro-admin-bbi-daily-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:530: WARNING: duplicate label casa-distro-admin-local-install-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:576: WARNING: duplicate label casa-distro-admin-convert-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:63: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:117: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:219: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:263: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:383: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:456: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:537: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst:580: WARNING: duplicate label casa_distro_admin_command_help:parameters, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_admin_command_help.rst ../../../src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:292: ERROR: Unexpected indentation. /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:40: WARNING: duplicate label casa-distro-help-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:57: WARNING: duplicate label casa-distro-distro-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:65: WARNING: duplicate label casa-distro-list-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:115: WARNING: duplicate label casa-distro-run-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:209: WARNING: duplicate label casa-distro-pull-image-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:311: WARNING: duplicate label casa-distro-shell-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:402: WARNING: duplicate label casa-distro-mrun-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst:499: WARNING: duplicate label casa-distro-bv-maker-help, other instance in /casa/host/src/development/casa-distro/master/doc/source/casa_distro_command_help.rst 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[ 14%] bv_command [NbConvertApp] Writing 59249 bytes to /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb [ 4%] Built target morphologist-ui-usrsphinx [ 4%] Built target aims-free-usrsphinx writing output... [ 28%] bv_command_help [ 4%] Built target ecat-doxygen [ 4%] Built target vidaIO-doxygen writing output... [ 42%] casa_distro_admin_command [ 4%] Create "share/doc/5.2" [ 4%] Built target axon-usrsphinx [ 4%] Built target aims-gpl-devdoc [ 4%] Built target anatomist-free-usrsphinx Running Sphinx v6.2.1 writing output... [ 57%] casa_distro_admin_command_help writing output... [ 71%] casa_distro_command -- nbsphinx should work. -- Using Qt backend: PyQt5 source: /casa/host/src/capsul/master/doc/source dest: /casa/host/build/share/doc/capsul-2.6 cwd: /casa/host/src/capsul/master/doc/source exec: /usr/bin/python3.10 -m jupyter nbconvert --to notebook --output /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb /casa/host/src/capsul/master/doc/source/tutorial/capsul_tutorial.ipynb.in loading pickled environment... writing output... [ 85%] casa_distro_command_help writing output... [100%] index warning: Tag 'DETAILS_AT_TOP' at line 162 of file '/casa/host/build/build_files/aims-free/graph/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 408 of file '/casa/host/build/build_files/aims-free/graph/doxygen/Doxyfile' has become obsolete. 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To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! generating indices... done highlighting module code... writing additional pages... search done copying static files... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:42,319::INFO::Found '14' pipeline(s) in 'morphologist.capsul'. done copying extra files... done dumping search index in English (code: en)... Running Sphinx v6.2.1 done dumping object inventory... done build succeeded, 66 warnings. 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/casa/host/build/include/vip/vcomplex Searching for files in directory /casa/host/build/include/vip/volume Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Reading and parsing tag files Reading tag file '/casa/host/build/share/doc/cartobase-5.2/doxyge[ 4%] Built target brainvisa-spm-devdoc [ 4%] Built target vip-doxygen done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... n/cartobase.tag', location '../../cartobase-5.2/doxygen'... Parsing files Preprocessing /casa/host/build/include/graph/config/graph_config.h... Parsing file /casa/host/build/include/graph/config/graph_config.h... Preprocessing /casa/host/build/include/graph/doc/graph_doc.h... Parsing file /casa/host/build/include/graph/doc/graph_doc.h... Preprocessing /casa/host/build/include/graph/graph/binary.h... Parsing file /casa/host/build/include/graph/graph/binary.h... Preprocessing /casa/host/build/include/graph/graph/dedge.h... Parsing file /casa/host/build/include/graph/graph/dedge.h... Preprocessing /casa/host/build/include/graph/graph/edge.h... Parsing file /casa/host/build/include/graph/graph/edge.h... Preprocessing /casa/host/build/include/graph/graph/gfactory.h... Parsing file /casa/host/build/include/graph/graph/gfactory.h... Preprocessing /casa/host/build/include/graph/graph/gprinter.h... Parsing file /casa/host/build/include/graph/graph/gprinter.h... Preprocessing /casa/host/build/include/graph/graph/graph.h... Parsing file /casa/host/build/include/graph/graph/graph.h... Preprocessing /casa/host/build/include/graph/graph/graphobject.h... Parsing file /casa/host/build/include/graph/graph/graphobject.h... Preprocessing /casa/host/build/include/graph/graph/greader.h... Parsing file /casa/host/build/include/graph/graph/greader.h... Preprocessing /casa/host/build/include/graph/graph/gwriter.h... Parsing file /casa/host/build/include/graph/graph/gwriter.h... Preprocessing /casa/host/build/include/graph/graph/gwriter_python.h... Parsing file /casa/host/build/include/graph/graph/gwriter_python.h... Preprocessing /casa/host/build/include/graph/graph/uedge.h... Parsing file /casa/host/build/include/graph/graph/uedge.h... Preprocessing /casa/host/build/include/graph/graph/vertex.h... Parsing file /casa/host/build/include/graph/graph/vertex.h... Preprocessing /casa/host/build/include/graph/graph/gparser.h... Parsing file /casa/host/build/include/graph/graph/gparser.h... Preprocessing /casa/host/build/include/graph/graph/gparser_xml.h... Parsing file /casa/host/build/include/graph/graph/gparser_xml.h... Preprocessing /casa/host/build/include/graph/graph/gparser_python.h... Parsing file /casa/host/build/include/graph/graph/gparser_python.h... Preprocessing /casa/host/build/include/graph/graph/gparser_shfj.h... Parsing file /casa/host/build/include/graph/graph/gparser_shfj.h... Preprocessing /casa/host/build/include/graph/io/gprinter.h... Parsing file /casa/host/build/include/graph/io/gprinter.h... Preprocessing /casa/host/build/include/graph/io/greader.h... Parsing file /casa/host/build/include/graph/io/greader.h... Preprocessing /casa/host/build/include/graph/io/gwriter.h... Parsing file /casa/host/build/include/graph/io/gwriter.h... Preprocessing /casa/host/build/include/graph/io/treader.h... Parsing file /casa/host/build/include/graph/io/treader.h... Preprocessing /casa/host/build/include/graph/io/twriter.h... Parsing file /casa/host/build/include/graph/io/twriter.h... Preprocessing /casa/host/build/include/graph/tree/base.h... Parsing file /casa/host/build/include/graph/tree/base.h... Preprocessing /casa/host/build/include/graph/tree/tfactory.h... Parsing file /casa/host/build/include/graph/tree/tfactory.h... Preprocessing /casa/host/build/include/graph/tree/treader.h... Parsing file /casa/host/build/include/graph/tree/treader.h... Preprocessing /casa/host/build/include/graph/tree/tparser.h... Parsing file /casa/host/build/include/graph/tree/tparser.h... Preprocessing /casa/host/build/include/graph/tree/tparser_shfj.h... Parsing file /casa/host/build/include/graph/tree/tparser_shfj.h... Preprocessing /casa/host/build/include/graph/tree/tparser_python.h... Parsing file /casa/host/build/include/graph/tree/tparser_python.h... Preprocessing /casa/host/build/include/graph/tree/tree.h... Parsing file /casa/host/build/include/graph/tree/tree.h... Preprocessing /casa/host/build/include/graph/tree/tvisitor.h... Parsing file /casa/host/build/include/graph/tree/tvisitor.h... Preprocessing /casa/host/build/include/graph/tree/twriter.h... Pa[autosummary] generating autosummary for: api/api.rst, api/attributes.rst, api/engine.rst, api/in_context.rst, api/index.rst, api/info.rst, api/pipeline.rst, api/plugins.rst, api/process.rst, api/qt_apps.rst, ..., api/subprocess.rst, api/utils.rst, documentation.rst, index.rst, installation.rst, status.rst, tutorial/capsul_tutorial.ipynb, user_guide_tree/advanced_usage.rst, user_guide_tree/index.rst, user_guide_tree/xml_spec.rst reading sources... [ 13%] bv_maker_help /casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag:1: warning: Internal inconsistency: scope for class carto::conversion::Helper::yes not found! reading sources... [ 20%] bv_maker_help_build reading sources... [ 26%] bv_maker_help_configure reading sources... [ 33%] bv_maker_help_doc reading sources... [ 40%] bv_maker_help_info reading sources... [ 46%] bv_maker_help_install_pack reading sources... [ 53%] bv_maker_help_pack reading sources... [ 60%] bv_maker_help_publish_pack reading sources... [ 66%] bv_maker_help_sources reading sources... [ 73%] bv_maker_help_status reading sources... [ 80%] bv_maker_help_test reading sources... [ 86%] bv_maker_help_test_pack reading sources... [ 93%] bv_maker_help_testref reading sources... [100%] bv_maker_help_testref_pack looking for now-outdated files... none found pickling environment... [ 4%] Built target casa-distro-sphinx done checking consistency... done preparing documents... done writing output... [ 6%] bv_maker [ 4%] Built target anafold-doxygen [ 4%] Built target neuron-doxygen WARNING: autodoc: failed to import module 'info' from module 'populse_db'; the following exception was raised: No module named 'populse_db.info' looking for now-outdated files... none found pickling environment... done checking consistency... /casa/host/src/populse/populse_db/master/docs/source/tutorial.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 12%] bv_maker_help rsing file /casa/host/build/include/graph/tree/twriter.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file graph/config/graph_config.h... Generating code for file graph/doc/graph_doc.h... Generating code for file graph/graph/binary.h... Generating code for file graph/graph/dedge.h... Generating code for file graph/graph/edge.h... Generating code for file graph/graph/gfactory.h... Generating code for file graph/graph/gparser.h... Generating code for file graph/graph/gparser_python.h... Generating code for file graph/graph/gparser_shfj.h... Generating code for file graph/graph/gparser_xml.h... Generating code for file graph/graph/gprinter.h... Generating code for file graph/io/gprinter.h... Generating code for file graph/graph/graph.h... Generating code for file graph/graph/graphobject.h... Generating code for file graph/graph/greader.h... Generating code for file graph/io/greader.h... Generating code for file graph/graph/gwriter.h... Generating code for file graph/io/gwriter.h... Generating code for file graph/graph/gwriter_python.h... Generating code for file graph/graph/uedge.h... Generating code for file graph/graph/vertex.h... Generating code for file graph/io/treader.h... Generating code for file graph/tree/treader.h... Generating code for file graph/io/twriter.h... Generating code for file graph/tree/twriter.h... Generating code for file graph/tree/base.h... Generating code for file graph/tree/tfactory.h... Generating code for file graph/tree/tparser.h... Generating code for file graph/tree/tparser_python.h... Generating code for file graph/tree/tparser_shfj.h... Generating code for file graph/tree/tree.h... Generating code for file graph/tree/tvisitor.h... Generating file documentation... Generating docs for file graph/config/graph_config.h... Generating docs for file graph/doc/graph_doc.h... Generating docs for file graph/graph/binary.h... Generating docs for file graph/graph/dedge.h... Generating docs for file graph/graph/edge.h... Generating docs for file graph/graph/gfactory.h... Generating docs for file graph/graph/gparser.h... Generating docs for file graph/graph/gparser_python.h... Generating docs for file graph/graph/gparser_shfj.h... Generating docs for file graph/graph/gparser_xml.h... Generating docs for file graph/graph/gprinter.h... Generawriting output... [ 18%] bv_maker_help_build writing output... [ 25%] bv_maker_help_configure writing output... [ 66%] modules writing output... [ 31%] bv_maker_help_doc writing output... [ 37%] bv_maker_help_info Running Sphinx v6.2.1 writing output... [ 43%] bv_maker_help_install_pack writing output... [ 50%] bv_maker_help_pack writing output... [100%] populse_db ting docs for file graph/io/gprinter.h... Generating docs for file graph/graph/graph.h... Generating docs for file graph/graph/graphobject.h... Generating docs for file graph/graph/greader.h... Generating docs for file graph/io/greader.h... Generating docs for file graph/graph/gwriter.h... Generating docs for file graph/io/gwriter.h... Generating docs for file graph/graph/gwriter_python.h... Generating docs for file graph/graph/uedge.h... Generating docs for file graph/graph/vertex.h... Generating docs for file graph/io/treader.h... Generating docs for file graph/tree/treader.h... Generating docs for file graph/io/twriter.h... Generating docs for file graph/tree/twriter.h... Generating docs for file graph/tree/base.h... Generating docs for file graph/tree/tfactory.h... Generating docs for file graph/tree/tparser.h... Generating docs for file graph/tree/tparser_python.h... Generating docs for file graph/tree/tparser_shfj.h... Generating docs for file graph/tree/tree.h... Generating docs for file graph/tree/tvisitor.h... Generating page documentation... Generating docs for page deprecated... Generating group documentation... Generating class documentation... Generating docs for compound BaseTree... Generating docs for compound ConstTreeVisitor... Generating docs for compound DEdge... Generating docs for compound Edge... Generating docs for compound Graph... Generating docs for compound GraphFactory... Generating docs for compound GraphObject... Generating docs for compound GraphParser... Generating docs for compound GraphParser_shfj... Generating docs for compound GraphParser_xml... Generating docs for compound GraphPrinter... Generating docs for compound GraphReader... Generating docs for compound GraphWriter... Generating docs for compound Tree... Generating docs for compound TreeFactory... Generating docs for compound TreeReader... Generating docs for compound TreeVisitor... Generating docs for compound TreeWriter... Generating docs for compound UEdge... Generating docs for compound Vertex... Generating namespace index... Generating docs for namespace carto Generating docs for compound carto::DataTypeCode< Graph >... Generating docs for compound carto::GraphWriter_Python... Generating docs for compound carto::GraphParser_Python... Generating docs for compound carto::TreeParser... Generating docs for compound carto::TreeParser_shfj... Generating docs for compound carto::TreeParser_Python... Generating graph info page... Generating directory documentation... Generating dependency graph for directory graph Generating dependency graph for directory graph/graph Generating dependency graph for directory graph/io Generating dependency graph for directory graph/tree Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... lookup cache used 1246/65536 hits=6093 misses=1714 finished... writing output... [ 56%] bv_maker_help_publish_pack writing output... [ 62%] bv_maker_help_sources writing output... [ 68%] bv_maker_help_status writing output... [ 75%] bv_maker_help_test writing output... [ 81%] bv_maker_help_test_pack writing output... [ 87%] bv_maker_help_testref writing output... [ 93%] bv_maker_help_testref_pack writing output... [100%] index [ 4%] Built target graph-doxygen generating indices... genindex done highlighting module code... writing additional pages... search generating indices... genindex done copying static files... py-modindex done copying extra files... done dumping search index in English (code: en)... done writing additional pages... search done dumping object inventory... done build succeeded. The HTML pages are in ../../share/doc/brainvisa-cmake-6.0. done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 3 warnings. The HTML pages are in ../../share/doc/populse-db-3.0. Running Sphinx v6.2.1 QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa' WARNING: html_static_path entry '_static' does not exist loading pickled environment... done loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... Running Sphinx v6.2.1 loading pickled environment... [ 4%] Built target brainvisa-cmake-usrsphinx [ 4%] Built target populse-db-sphinx loading pickled environment... [ 4%] Create "share/doc/5.2" done [ 4%] Create "share/doc/5.2" loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/user_doc/objects.inv... loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... [ 4%] Built target brainrat-gpl-devdoc [ 4%] Built target constellation-gpl-devdoc [ 4%] Create "share/doc/5.2" [ 4%] Create "share/doc/5.2" [ 4%] Built target cortical_surface-gpl-devdoc [ 4%] Built target brainvisa_freesurfer-devdoc [ 4%] Built target Brainvisa-doc [ 4%] Built target neuro-forge-doc [ 4%] Built target brainvisa-share-doc [ 4%] Writing documentation to /casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/doc... [ 4%] Built target aims-gpl-doc warning: Tag 'SYMBOL_CACHE_SIZE' at line 295 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 479 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 750 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 805 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1142 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1148 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1313 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1335 of file '/casa/host/build/build_files/aims-free/aimsgui/src/CiftiLib-1.5.1/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source '/casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/example' is not a readable file or directory... skipping. loading pickled environment... building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../../share/doc/aimsdata-5.2/dev_doc. [ 8%] Built target aims-free_target_17 [ 12%] Built target soma-io_target_6 /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:500: warning: include file stdint.h not found, perhaps you forgot to add its directory to INCLUDE_PATH? /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1469: warning: Reached end of file while still inside a (nested) comment. Nesting level 2 (probable line reference: 1443, 1437) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:501: warning: missing title after \defgroup NIFTI1_DATATYPES /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:541: warning: missing title after \defgroup NIFTI1_DATATYPE_ALIASES /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:703: warning: missing title after \defgroup NIFTI1_INTENT_CODES /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1189: warning: missing title after \defgroup NIFTI1_XFORM_CODES /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1253: warning: missing title after \defgroup NIFTI1_UNITS /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1394: warning: missing title after \defgroup NIFTI1_SLICE_ORDER /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:36: warning: include file stdint.h not found, perhaps you forgot to add its directory to INCLUDE_PATH? [ 12%] Built target soma-io_target_7 /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:40: warning: Compound cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:65: warning: Compound cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:43: warning: Compound cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:67: warning: Compound cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:61: warning: Compound cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:51: warning: Compound cifti::CiftiBrainModelsMap::SurfaceMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:56: warning: Compound cifti::CiftiBrainModelsMap::VolumeMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:102: warning: Compound cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:111: warning: Compound cifti::CiftiFile::WriteImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:42: warning: Compound cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:38: warning: Compound cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:44: warning: Compound cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:47: warning: Compound cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:40: warning: Compound cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:35: warning: Compound cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:37: warning: Compound cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Compact3DLookup.h:37: warning: Compound cifti::Compact3DLookup is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:39: warning: Compound cifti::CompactLookup is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:76: warning: Compound cifti::CompactLookup::const_iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:48: warning: Compound cifti::CompactLookup::iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:37: warning: Compound cifti::ConstFloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:48: warning: Compound cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:39: warning: Compound cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:44: warning: Compound cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MatrixFunctions.h:42: warning: Compound cifti::MatrixFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:44: warning: Compound cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:40: warning: Compound cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:38: warning: Compound cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:42: warning: Compound cifti::NiftiExtension is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:48: warning: Compound cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:49: warning: Compound cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:97: warning: Compound cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:36: warning: Compound cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:41: warning: Compound cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:35: warning: Compound cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:147: warning: Compound cifti::XmlAttributesResult is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:149: warning: Compound cifti::XmlAttributesResult::OptionalStatus is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.cxx:51: warning: no matching class member found for void CiftiBrainModelsMap::addSurfaceModel(const int64_t &numberOfNodes, const cifti::StructureEnum::Enum &structure, const vector< int64_t > &nodeList) Possible candidates: 'void cifti::CiftiBrainModelsMap::addSurfaceModel(const int64_t &numberOfNodes, const StructureEnum::Enum &structure, const float *roi=NULL)' 'void cifti::CiftiBrainModelsMap::addSurfaceModel(const int64_t &numberOfNodes, const StructureEnum::Enum &structure, const std::vector< int64_t > &nodeList)' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.cxx:236: warning: no matching class member found for void CiftiXML::readXML(const vector< char > &text) Possible candidates: 'void cifti::CiftiXML::readXML(XmlReader &xml)' 'void cifti::CiftiXML::readXML(const std::vector< char > &text)' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.cxx:60: warning: no matching class member found for VolumeSpace::VolumeSpace(int64_t[3] dims[3], const vector< vector< float > > &sform) Possible candidates: 'cifti::VolumeSpace::VolumeSpace()' 'cifti::VolumeSpace::VolumeSpace(const int64_t dims[3], const std::vector< std::vector< float > > &sform)' 'cifti::VolumeSpace::VolumeSpace(const int64_t dims[3], const float sform[12])' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.cxx:70: warning: no matching class member found for void VolumeSpace::setSpace(int64_t[3] dims[3], const vector< vector< float > > &sform) Possible candidates: 'void cifti::VolumeSpace::setSpace(const int64_t dims[3], const std::vector< std::vector< float > > &sform)' 'void cifti::VolumeSpace::setSpace(const int64_t dims[3], const float sform[12])' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:217: warning: no matching class member found for void CiftiFile::getRow(float *dataOut, const vector< int64_t > &indexSelect, const bool &tolerateShortRead) const Possible candidates: 'void cifti::CiftiFile::getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead=false) const' 'void cifti::CiftiFile::getRow(float *dataOut, const int64_t &index, const bool &tolerateShortRead=false) const' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:252: warning: no matching class member found for void CiftiFile::setRow(const float *dataIn, const vector< int64_t > &indexSelect) Possible candidates: 'void cifti::CiftiFile::setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)' 'void cifti::CiftiFile::setRow(const float *dataIn, const int64_t &index)' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:330: warning: documented symbol 'CiftiMemoryImpl::CiftiMemoryImpl' was not declared or defined. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:336: warning: no uniquely matching class member found for void CiftiMemoryImpl::getRow(float *dataOut, const vector< int64_t > &indexSelect, const bool &) const /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:346: warning: no uniquely matching class member found for void CiftiMemoryImpl::getColumn(float *dataOut, const int64_t &index) const /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:359: warning: no uniquely matching class member found for void CiftiMemoryImpl::setRow(const float *dataIn, const vector< int64_t > &indexSelect) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:369: warning: no uniquely matching class member found for void CiftiMemoryImpl::setColumn(const float *dataIn, const int64_t &index) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:382: warning: documented symbol 'CiftiOnDiskImpl::CiftiOnDiskImpl' was not declared or defined. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:427: warning: documented symbol 'CiftiOnDiskImpl::CiftiOnDiskImpl' was not declared or defined. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:458: warning: no uniquely matching class member found for void CiftiOnDiskImpl::getRow(float *dataOut, const vector< int64_t > &indexSelect, const bool &tolerateShortRead) const /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:463: warning: no uniquely matching class member found for void CiftiOnDiskImpl::getColumn(float *dataOut, const int64_t &index) const /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:477: warning: no uniquely matching class member found for void CiftiOnDiskImpl::setRow(const float *dataIn, const vector< int64_t > &indexSelect) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.cxx:482: warning: no uniquely matching class member found for void CiftiOnDiskImpl::setColumn(const float *dataIn, const int64_t &index) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:51: warning: no matching class member found for FloatMatrix::FloatMatrix(const vector< vector< float > > &matrixIn) Possible candidates: 'cifti::FloatMatrix::FloatMatrix()' 'cifti::FloatMatrix::FloatMatrix(const std::vector< std::vector< float > > &matrixIn)' 'cifti::FloatMatrix::FloatMatrix(const int64_t &rows, const int64_t &cols)' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:281: warning: no matching class member found for FloatMatrixRowRef::FloatMatrixRowRef(vector< float > &therow) Possible candidates: 'cifti::FloatMatrixRowRef::FloatMatrixRowRef()' 'cifti::FloatMatrixRowRef::FloatMatrixRowRef(FloatMatrixRowRef &right)' 'cifti::FloatMatrixRowRef::FloatMatrixRowRef(std::vector< float > &therow)' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.cxx:336: warning: no matching class member found for ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const vector< float > &therow) Possible candidates: 'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef()' 'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const ConstFloatMatrixRowRef &right)' 'cifti::ConstFloatMatrixRowRef::ConstFloatMatrixRowRef(const std::vector< float > &therow)' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.cxx:35: warning: no matching file member found for XmlAttributesResult cifti::XmlReader_parseAttributes(XmlReader &xml, const vector< AString > &mandatoryNames, const vector< AString > &optionalNames) Possible candidates: 'XmlAttributesResult XmlReader_parseAttributes(XmlReader &xml, const std::vector< AString > &mandatoryNames, const std::vector< AString > &optionalNames=std::vector< AString >())' at line 162 of file /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h [ 12%] Built target aims-free_target_2 [ 12%] Built target aims-free_target_10 /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:506: warning: Member DT_NONE (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:507: warning: Member DT_UNKNOWN (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:508: warning: Member DT_BINARY (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:509: warning: Member DT_UNSIGNED_CHAR (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:510: warning: Member DT_SIGNED_SHORT (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:511: warning: Member DT_SIGNED_INT (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:512: warning: Member DT_FLOAT (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:513: warning: Member DT_COMPLEX (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:514: warning: Member DT_DOUBLE (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:515: warning: Member DT_RGB (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:516: warning: Member DT_ALL (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:519: warning: Member DT_UINT8 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:520: warning: Member DT_INT16 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:521: warning: Member DT_INT32 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:522: warning: Member DT_FLOAT32 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:523: warning: Member DT_COMPLEX64 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:524: warning: Member DT_FLOAT64 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:525: warning: Member DT_RGB24 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:528: warning: Member DT_INT8 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:529: warning: Member DT_UINT16 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:530: warning: Member DT_UINT32 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:531: warning: Member DT_INT64 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:532: warning: Member DT_UINT64 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:533: warning: Member DT_FLOAT128 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:534: warning: Member DT_COMPLEX128 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:535: warning: Member DT_COMPLEX256 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:707: warning: Member NIFTI_INTENT_CORREL (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:895: warning: Member NIFTI_INTENT_VECTOR (variable) of cifti is not documented. [ 16%] Built target aims-free_target_16 /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1288: warning: Member XYZT_TO_SPACE(xyzt) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1289: warning: Member XYZT_TO_TIME(xyzt) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1292: warning: Member SPACE_TIME_TO_XYZT(ss, tt) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1385: warning: Member DIM_INFO_TO_FREQ_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1386: warning: Member DIM_INFO_TO_PHASE_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1387: warning: Member DIM_INFO_TO_SLICE_DIM(di) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1390: warning: Member FPS_INTO_DIM_INFO(fd, pd, sd) (macro definition) of group NIFTI1_UNITS is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:306: warning: Member extension[4] (variable) of struct cifti::nifti1_extender is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1399: warning: Member NIFTI_SLICE_UNKNOWN (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1400: warning: Member NIFTI_SLICE_SEQ_INC (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1401: warning: Member NIFTI_SLICE_SEQ_DEC (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1402: warning: Member NIFTI_SLICE_ALT_INC (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1403: warning: Member NIFTI_SLICE_ALT_DEC (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1404: warning: Member NIFTI_SLICE_ALT_INC2 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1405: warning: Member NIFTI_SLICE_ALT_DEC2 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1: warning: Member nifti_1_header (typedef) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1: warning: Member nifti1_extender (typedef) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1: warning: Member nifti1_extension (typedef) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:55: warning: Member nifti_2_header (typedef) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:116: warning: Member AString_split(const AString &input, const char &delim) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:117: warning: Member AString_split_whitespace(const AString &input) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:118: warning: Member AString_toInt(const AString &input, bool &ok) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/AString.h:119: warning: Member AString_toFloat(const AString &input, bool &ok) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:69: warning: Member operator*(const float &left, const Vector3D &right) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:159: warning: Member XmlReader_readElementText(XmlReader &xml) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:160: warning: Member XmlReader_readNextStartElement(XmlReader &xml) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:161: warning: Member XmlReader_elementName(XmlReader &xml) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:162: warning: Member XmlReader_parseAttributes(XmlReader &xml, const std::vector< AString > &mandatoryNames, const std::vector< AString > &optionalNames=std::vector< AString >()) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:163: warning: Member XmlReader_checkEndElement(XmlReader &xml, const AString &elementName) (function) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:506: warning: Member DT_NONE (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:507: warning: Member DT_UNKNOWN (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:508: warning: Member DT_BINARY (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:509: warning: Member DT_UNSIGNED_CHAR (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:510: warning: Member DT_SIGNED_SHORT (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:511: warning: Member DT_SIGNED_INT (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:512: warning: Member DT_FLOAT (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:513: warning: Member DT_COMPLEX (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:514: warning: Member DT_DOUBLE (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:515: warning: Member DT_RGB (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:516: warning: Member DT_ALL (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:519: warning: Member DT_UINT8 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:520: warning: Member DT_INT16 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:521: warning: Member DT_INT32 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:522: warning: Member DT_FLOAT32 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:523: warning: Member DT_COMPLEX64 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:524: warning: Member DT_FLOAT64 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:525: warning: Member DT_RGB24 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:528: warning: Member DT_INT8 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:529: warning: Member DT_UINT16 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:530: warning: Member DT_UINT32 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:531: warning: Member DT_INT64 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:532: warning: Member DT_UINT64 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:533: warning: Member DT_FLOAT128 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:534: warning: Member DT_COMPLEX128 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:535: warning: Member DT_COMPLEX256 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:707: warning: Member NIFTI_INTENT_CORREL (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:895: warning: Member NIFTI_INTENT_VECTOR (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1399: warning: Member NIFTI_SLICE_UNKNOWN (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1400: warning: Member NIFTI_SLICE_SEQ_INC (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1401: warning: Member NIFTI_SLICE_SEQ_DEC (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1402: warning: Member NIFTI_SLICE_ALT_INC (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1403: warning: Member NIFTI_SLICE_ALT_DEC (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1404: warning: Member NIFTI_SLICE_ALT_INC2 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:1405: warning: Member NIFTI_SLICE_ALT_DEC2 (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:38: warning: Member NIFTI_INTENT_CONNECTIVITY_UNKNOWN (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:39: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:40: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_TIME (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:41: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_SERIES (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:42: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:43: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_TIME (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:44: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_SERIES (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:45: warning: Member NIFTI_INTENT_CONNECTIVITY_CONNECTIVITY_TRAJECTORY (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:46: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_TRAJECTORY (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:47: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_SCALARS (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:48: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_LABELS (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:49: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_SCALAR (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:50: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_DENSE (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:51: warning: Member NIFTI_INTENT_CONNECTIVITY_DENSE_PARCELLATED (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:52: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_PARCELLATED_SERIES (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:53: warning: Member NIFTI_INTENT_CONNECTIVITY_PARCELLATED_PARCELLATED_SCALAR (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti2.h:55: warning: Member NIFTI_ECODE_CIFTI (variable) of cifti is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:46: warning: Member ModelType (enumeration) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:74: warning: Member hasVolumeData() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:75: warning: Member hasVolumeData(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:76: warning: Member hasSurfaceData(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:77: warning: Member getIndexForNode(const int64_t &node, const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:78: warning: Member getIndexForVoxel(const int64_t *ijk, StructureEnum::Enum *structureOut=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:79: warning: Member getIndexForVoxel(const int64_t &i, const int64_t &j, const int64_t &k, StructureEnum::Enum *structureOut=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:80: warning: Member getInfoForIndex(const int64_t index) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:81: warning: Member getSurfaceMap(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:82: warning: Member getFullVolumeMap() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:83: warning: Member getVolumeStructureMap(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:84: warning: Member getVolumeSpace() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:85: warning: Member getSurfaceNumberOfNodes(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:86: warning: Member getSurfaceStructureList() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:87: warning: Member getVolumeStructureList() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:88: warning: Member getNodeList(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:89: warning: Member getVoxelList(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:90: warning: Member getModelInfo() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:93: warning: Member addSurfaceModel(const int64_t &numberOfNodes, const StructureEnum::Enum &structure, const float *roi=NULL) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:94: warning: Member addSurfaceModel(const int64_t &numberOfNodes, const StructureEnum::Enum &structure, const std::vector< int64_t > &nodeList) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:95: warning: Member addVolumeModel(const StructureEnum::Enum &structure, const std::vector< int64_t > &ijkList) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:96: warning: Member setVolumeSpace(const VolumeSpace &space) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:97: warning: Member clear() (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:99: warning: Member clone() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:100: warning: Member getType() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:101: warning: Member getLength() const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:102: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:103: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:104: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:105: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:106: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:107: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiBrainModelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:69: warning: Member m_type (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:70: warning: Member m_structure (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:71: warning: Member m_surfaceNode (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:72: warning: Member m_ijk[3] (variable) of struct cifti::CiftiBrainModelsMap::IndexInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:63: warning: Member m_type (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:64: warning: Member m_structure (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:65: warning: Member m_indexStart (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:65: warning: Member m_indexCount (variable) of struct cifti::CiftiBrainModelsMap::ModelInfo is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:53: warning: Member m_ciftiIndex (variable) of struct cifti::CiftiBrainModelsMap::SurfaceMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:54: warning: Member m_surfaceNode (variable) of struct cifti::CiftiBrainModelsMap::SurfaceMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:58: warning: Member m_ciftiIndex (variable) of struct cifti::CiftiBrainModelsMap::VolumeMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiBrainModelsMap.h:59: warning: Member m_ijk[3] (variable) of struct cifti::CiftiBrainModelsMap::VolumeMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:45: warning: Member getMapMetadata(const int64_t &index) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:46: warning: Member getMapLabelTable(const int64_t &index) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:47: warning: Member getMapName(const int64_t &index) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:49: warning: Member setMapMetadata(const int64_t &index, const MetaData &md) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:50: warning: Member setMapLabelTable(const int64_t &index, const LabelTable &lt) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:51: warning: Member setMapName(const int64_t &index, const AString &mapName) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:52: warning: Member setLength(const int64_t &length) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:53: warning: Member clear() (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:55: warning: Member clone() const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:56: warning: Member getType() const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:57: warning: Member getLength() const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:58: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:59: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:60: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:61: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:62: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiLabelsMap.h:63: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiLabelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:49: warning: Member clone() const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:50: warning: Member getType() const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:51: warning: Member getLength() const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:52: warning: Member operator==(const CiftiMappingType &rhs) const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:54: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:55: warning: Member readXML1(XmlReader &xml)=0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:56: warning: Member readXML2(XmlReader &xml)=0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:57: warning: Member writeXML1(XmlWriter &xml) const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:58: warning: Member writeXML2(XmlWriter &xml) const =0 (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:56: warning: Member hasVolumeData() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:57: warning: Member hasSurface(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:58: warning: Member hasSurfaceData(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:59: warning: Member getVolumeSpace() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:60: warning: Member getSurfaceNumberOfNodes(const StructureEnum::Enum &structure) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:61: warning: Member getIndexForNode(const int64_t &node, const StructureEnum::Enum &structure) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:62: warning: Member getIndexForVoxel(const int64_t *ijk) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:63: warning: Member getIndexForVoxel(const int64_t &i, const int64_t &j, const int64_t &k) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:64: warning: Member getParcelSurfaceStructures() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:65: warning: Member getParcels() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:68: warning: Member addSurface(const int64_t &numberOfNodes, const StructureEnum::Enum &structure) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:69: warning: Member setVolumeSpace(const VolumeSpace &space) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:70: warning: Member addParcel(const Parcel &parcel) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:71: warning: Member clear() (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:73: warning: Member clone() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:74: warning: Member getType() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:75: warning: Member getLength() const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:76: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:77: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:78: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:79: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:80: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:81: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiParcelsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:52: warning: Member operator==(const Parcel &rhs) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:53: warning: Member operator!=(const Parcel &rhs) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:54: warning: Member approximateMatch(const Parcel &rhs, AString *explanation=NULL) const (function) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:49: warning: Member m_surfaceNodes (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:50: warning: Member m_voxelIndices (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiParcelsMap.h:51: warning: Member m_name (variable) of struct cifti::CiftiParcelsMap::Parcel is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:44: warning: Member CiftiScalarsMap(const CiftiScalarsMap &rhs) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:45: warning: Member operator=(const CiftiScalarsMap &rhs) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:46: warning: Member CiftiScalarsMap(const int64_t &length) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:48: warning: Member getMapMetadata(const int64_t &index) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:49: warning: Member getMapName(const int64_t &index) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:51: warning: Member setMapMetadata(const int64_t &index, const MetaData &mdIn) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:52: warning: Member setMapName(const int64_t &index, const AString &mapName) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:53: warning: Member setLength(const int64_t &length) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:54: warning: Member clear() (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:56: warning: Member clone() const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:57: warning: Member getType() const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:58: warning: Member getLength() const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:59: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:60: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:61: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:62: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:63: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiScalarsMap.h:64: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiScalarsMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:38: warning: Member Unit (enumeration) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:41: warning: Member MappingType (enumeration) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:45: warning: Member getStart() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:46: warning: Member getStep() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:47: warning: Member getUnit() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:56: warning: Member CiftiSeriesMap(const int64_t &length, const float &start=0.0f, const float &step=1.0f, const Unit &unit=SECOND) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:63: warning: Member setStart(const float &start) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:64: warning: Member setStep(const float &step) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:65: warning: Member setUnit(const Unit &unit) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:66: warning: Member setLength(const int64_t &length) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:72: warning: Member clone() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:73: warning: Member getType() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:74: warning: Member getLength() const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:75: warning: Member operator==(const CiftiMappingType &rhs) const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:84: warning: Member approximateMatch(const CiftiMappingType &rhs, AString *explanation=NULL) const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:101: warning: Member readXML1(XmlReader &xml) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:102: warning: Member readXML2(XmlReader &xml) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:103: warning: Member writeXML1(XmlWriter &xml) const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:104: warning: Member writeXML2(XmlWriter &xml) const (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:53: warning: Member operator!=(const CiftiMappingType &rhs) const (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:68: warning: Member stringToUnit(const AString &string, bool &ok) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:69: warning: Member unitToString(const Unit &theUnit) (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiSeriesMap.h:70: warning: Member getAllUnits() (function) of class cifti::CiftiSeriesMap is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiMappingType.h:61: warning: Member mappingTypeToName(const MappingType &type) (function) of class cifti::CiftiMappingType is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:41: warning: Member getMajor() const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:42: warning: Member getMinor() const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:45: warning: Member CiftiVersion(const int16_t &major, const int16_t &minor) (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:46: warning: Member CiftiVersion(const AString &versionString) (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:47: warning: Member toString() const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:48: warning: Member operator<(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:49: warning: Member operator>(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:50: warning: Member operator==(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:51: warning: Member operator!=(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:52: warning: Member operator<=(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiVersion.h:53: warning: Member operator>=(const CiftiVersion &rhs) const (function) of class cifti::CiftiVersion is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:57: warning: Member getNumberOfDimensions() const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:58: warning: Member getParsedVersion() const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:65: warning: Member getFileMetaData() const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:67: warning: Member getMappingType(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:68: warning: Member getBrainModelsMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:69: warning: Member getBrainModelsMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:70: warning: Member getLabelsMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:71: warning: Member getLabelsMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:72: warning: Member getParcelsMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:73: warning: Member getParcelsMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:74: warning: Member getScalarsMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:75: warning: Member getScalarsMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:76: warning: Member getSeriesMap(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:77: warning: Member getSeriesMap(const int &direction) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:78: warning: Member getDimensionLength(const int &direction) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:79: warning: Member getDimensions() const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:81: warning: Member setNumberOfDimensions(const int &num) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:82: warning: Member setMap(const int &direction, const CiftiMappingType &mapIn) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:83: warning: Member setFileMetaData(const MetaData &mdIn) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:84: warning: Member clear() (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:86: warning: Member readXML(XmlReader &xml) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:87: warning: Member readXML(const std::vector< char > &text) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:89: warning: Member writeXMLToVector(const CiftiVersion &writingVersion=CiftiVersion()) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:90: warning: Member writeXML(XmlWriter &xml, const CiftiVersion &writingVersion=CiftiVersion()) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:96: warning: Member CiftiXML(const CiftiXML &rhs) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:97: warning: Member operator=(const CiftiXML &rhs) (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:98: warning: Member operator==(const CiftiXML &rhs) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:99: warning: Member operator!=(const CiftiXML &rhs) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/CiftiXML.h:100: warning: Member approximateMatch(const CiftiXML &rhs) const (function) of class cifti::CiftiXML is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:82: warning: Member Label(const Label &gl) (function) of class cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:85: warning: Member operator=(const Label &gl) (function) of class cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:95: warning: Member hashCode() (function) of class cifti::Label is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/Label.h:133: warning: Member matches(const Label &rhs, const bool checkColor=false) const (function) of class cifti::Label is not documented. building [mo]: targets for 0 po files that are out of date writing output... /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:49: warning: Member LabelTable(const LabelTable &glt) (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:51: warning: Member operator=(const LabelTable &glt) (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:53: warning: Member matches(const LabelTable &rhs, const bool checkColors=false) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:55: warning: Member operator==(const LabelTable &rhs) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:57: warning: Member operator!=(const LabelTable &rhs) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:148: warning: Member createLabelsForKeys(const std::set< int32_t > &newKeys) (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:150: warning: Member writeXML(XmlWriter &xmlWriter) const (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:152: warning: Member readXml(XmlReader &xml) (function) of class cifti::LabelTable is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/LabelTable.h:156: warning: Member getKeys(std::vector< int32_t > &keysOut) const (function) of class cifti::LabelTable is not documented. building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../../share/doc/anatomist-5.2/dev_doc. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:50: warning: Member MetaData(const MetaData &o) (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:52: warning: Member operator=(const MetaData &o) (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:54: warning: Member operator==(const MetaData &rhs) const (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:56: warning: Member operator!=(const MetaData &rhs) const (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:94: warning: Member writeCiftiXML1(XmlWriter &xmlWriter) const (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:95: warning: Member writeCiftiXML2(XmlWriter &xmlWriter) const (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:96: warning: Member readCiftiXML1(XmlReader &xml) (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/MetaData.h:97: warning: Member readCiftiXML2(XmlReader &xml) (function) of class cifti::MetaData is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:47: warning: Member OrientTypes (enumeration) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:57: warning: Member VolumeSpace(const int64_t dims[3], const std::vector< std::vector< float > > &sform) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:58: warning: Member VolumeSpace(const int64_t dims[3], const float sform[12]) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:59: warning: Member setSpace(const int64_t dims[3], const std::vector< std::vector< float > > &sform) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:60: warning: Member setSpace(const int64_t dims[3], const float sform[12]) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:61: warning: Member getDims() const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:62: warning: Member getSform() const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:63: warning: Member getSpacingVectors(Vector3D &iStep, Vector3D &jStep, Vector3D &kStep, Vector3D &origin) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:64: warning: Member matchesVolumeSpace(const VolumeSpace &right) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:65: warning: Member operator==(const VolumeSpace &right) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:66: warning: Member operator!=(const VolumeSpace &right) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:115: warning: Member indexValid(const T *indexIn) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:129: warning: Member getIndex(const int64_t &indexIn1, const int64_t &indexIn2, const int64_t &indexIn3) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:135: warning: Member getIndex(const T *indexIn) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:140: warning: Member readCiftiXML1(XmlReader &xml) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:141: warning: Member readCiftiXML2(XmlReader &xml) (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:142: warning: Member writeCiftiXML1(XmlWriter &xml) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Cifti/VolumeSpace.h:143: warning: Member writeCiftiXML2(XmlWriter &xml) const (function) of class cifti::VolumeSpace is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:48: warning: Member ENDIAN (enumeration) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:73: warning: Member getCiftiXML() const (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:74: warning: Member isInMemory() const (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:78: warning: Member getDimensions() const (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:89: warning: Member setCiftiXML(const CiftiXML &xml, const bool useOldMetadata=true) (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:90: warning: Member setRow(const float *dataIn, const std::vector< int64_t > &indexSelect) (function) of class cifti::CiftiFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:105: warning: Member getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:106: warning: Member getColumn(float *dataOut, const int64_t &index) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:107: warning: Member isInMemory() const (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:114: warning: Member setRow(const float *dataIn, const std::vector< int64_t > &indexSelect)=0 (function) of class cifti::CiftiFile::WriteImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:115: warning: Member setColumn(const float *dataIn, const int64_t &index)=0 (function) of class cifti::CiftiFile::WriteImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:105: warning: Member getRow(float *dataOut, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:106: warning: Member getColumn(float *dataOut, const int64_t &index) const =0 (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/CiftiFile.h:107: warning: Member isInMemory() const (function) of class cifti::CiftiFile::ReadImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:103: warning: Member open(const AString &filename, const BinaryFile::OpenMode &opmode) (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:104: warning: Member close() (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:105: warning: Member seek(const int64_t &position) (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:106: warning: Member pos() (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:107: warning: Member read(void *dataOut, const int64_t &count, int64_t *numRead) (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.cxx:108: warning: Member write(const void *dataIn, const int64_t &count) (function) of class cifti::StrFileImpl is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:72: warning: Member getFilename() const (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:68: warning: Member m_fileName (variable) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:43: warning: Member OpenMode (enumeration) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:56: warning: Member open(const AString &filename, const OpenMode &opmode=READ) (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:57: warning: Member close() (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:58: warning: Member getFilename() const (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:59: warning: Member getOpenForRead() (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:60: warning: Member getOpenForWrite() (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:61: warning: Member seek(const int64_t &position) (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:62: warning: Member pos() (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:63: warning: Member read(void *dataOut, const int64_t &count, int64_t *numRead=NULL) (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:64: warning: Member write(const void *dataIn, const int64_t &count) (function) of class cifti::BinaryFile is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:70: warning: Member open(const AString &filename, const OpenMode &opmode)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:71: warning: Member close()=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:72: warning: Member getFilename() const (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:73: warning: Member seek(const int64_t &position)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:74: warning: Member pos()=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:75: warning: Member read(void *dataOut, const int64_t &count, int64_t *numRead)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:76: warning: Member write(const void *dataIn, const int64_t &count)=0 (function) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/BinaryFile.h:68: warning: Member m_fileName (variable) of class cifti::BinaryFile::ImplInterface is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:43: warning: Member swap(T &toSwap) (function) of class cifti::ByteSwapping is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:46: warning: Member swapArray(T *toSwap, const uint64_t &count) (function) of class cifti::ByteSwapping is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/ByteSwapping.h:48: warning: Member isBigEndian() (function) of class cifti::ByteSwapping is not documented. [ 24%] Built target aims-free_target_31 /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:110: warning: Member end() (function) of class cifti::CompactLookup is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:111: warning: Member end() const (function) of class cifti::CompactLookup is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:83: warning: Member operator==(const const_iterator &rhs) const (function) of class cifti::CompactLookup::const_iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:90: warning: Member operator*() (function) of class cifti::CompactLookup::const_iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:96: warning: Member operator->() (function) of class cifti::CompactLookup::const_iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:55: warning: Member operator==(const iterator &rhs) const (function) of class cifti::CompactLookup::iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:62: warning: Member operator*() (function) of class cifti::CompactLookup::iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/CompactLookup.h:68: warning: Member operator->() (function) of class cifti::CompactLookup::iterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:42: warning: Member ConstFloatMatrixRowRef(const ConstFloatMatrixRowRef &right) (function) of class cifti::ConstFloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:43: warning: Member ConstFloatMatrixRowRef(const std::vector< float > &therow) (function) of class cifti::ConstFloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:44: warning: Member operator[](const int64_t &index) (function) of class cifti::ConstFloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:53: warning: Member FloatMatrixRowRef(FloatMatrixRowRef &right) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:54: warning: Member FloatMatrixRowRef(std::vector< float > &therow) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:55: warning: Member operator=(const FloatMatrixRowRef &right) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:56: warning: Member operator=(const ConstFloatMatrixRowRef &right) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:57: warning: Member operator=(const float &right) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:58: warning: Member operator[](const int64_t &index) (function) of class cifti::FloatMatrixRowRef is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:73: warning: Member operator[](const int64_t &index) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:74: warning: Member operator[](const int64_t &index) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:75: warning: Member operator+=(const FloatMatrix &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:76: warning: Member operator-=(const FloatMatrix &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:77: warning: Member operator*=(const FloatMatrix &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:78: warning: Member operator+=(const float &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:79: warning: Member operator-=(const float &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:80: warning: Member operator*=(const float &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:81: warning: Member operator/=(const float &right) (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:82: warning: Member operator+(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:83: warning: Member operator-(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:84: warning: Member operator-() const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:85: warning: Member operator*(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:86: warning: Member operator==(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/FloatMatrix.h:87: warning: Member operator!=(const FloatMatrix &right) const (function) of class cifti::FloatMatrix is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:131: warning: Member addVectors(const float v1[3], const float v2[3], float resultOut[3]) (function) of class cifti::MathFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:261: warning: Member isNaN(const float number) (function) of class cifti::MathFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:263: warning: Member isPosInf(const float number) (function) of class cifti::MathFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:265: warning: Member isNegInf(const float number) (function) of class cifti::MathFunctions is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:227: warning: The following parameter of cifti::MathFunctions::arraysEqual(const float a[], const float b[], const int32_t numElements) is not documented: parameter 'numElements' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:273: warning: The following parameter of cifti::MathFunctions::compareArrays(const float a1[], const float a2[], const int32_t numElements, const float tolerance) is not documented: parameter 'numElements' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'X' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'Y' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'X' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'Y' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:1324: warning: argument 'coordinate' of command @param is not found in the argument list of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:121: warning: The following parameters of cifti::MathFunctions::distanceSquared2D(const double x1, const double y1, const double x2, const double y2) are not documented: parameter 'x1' parameter 'y1' parameter 'x2' parameter 'y2' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:79: warning: The following parameter of cifti::MathFunctions::normalizedCrossProduct(const float x1[], const float x2[], float resultOut[]) is not documented: parameter 'resultOut' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:352: warning: argument 'vectorInOut' of command @param is not found in the argument list of cifti::MathFunctions::normalizeVector(double vector[3]) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:90: warning: The following parameter of cifti::MathFunctions::normalizeVector(double vector[3]) is not documented: parameter 'vector' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.cxx:333: warning: argument 'vectorInOut' of command @param is not found in the argument list of cifti::MathFunctions::normalizeVector(float vector[3]) /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:88: warning: The following parameter of cifti::MathFunctions::normalizeVector(float vector[3]) is not documented: parameter 'vector' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MathFunctions.h:63: warning: The following parameter of cifti::MathFunctions::normalVectorDirection(const float v1[3], const float v2[3], const float v3[3], float directionOut[3]) is not documented: parameter 'directionOut' /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:47: warning: Member getDimensions() const (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:49: warning: Member resize(const std::vector< I > &dims) (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:51: warning: Member at(const std::vector< I > &pos) (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:53: warning: Member at(const std::vector< I > &pos) const (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:55: warning: Member get(const int &fullDims, const std::vector< I > &indexSelect) (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimArray.h:57: warning: Member get(const int &fullDims, const std::vector< I > &indexSelect) const (function) of class cifti::MultiDimArray is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:45: warning: Member MultiDimIterator(const std::vector< T > &dimensions) (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:46: warning: Member operator++() (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:47: warning: Member operator++(int) (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:48: warning: Member operator--() (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:49: warning: Member operator--(int) (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:50: warning: Member operator*() const (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/MultiDimIterator.h:51: warning: Member atEnd() const (function) of class cifti::MultiDimIterator is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:41: warning: Member dot(const Vector3D &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:42: warning: Member cross(const Vector3D &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:43: warning: Member normal(float *origLength=NULL) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:44: warning: Member length() const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:45: warning: Member lengthsquared() const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:48: warning: Member Vector3D(const float &x, const float &y, const float &z) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:49: warning: Member Vector3D(const float *right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:51: warning: Member operator[](const int64_t &index) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:52: warning: Member operator[](const int64_t &index) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:53: warning: Member operator[](const int32_t &index) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:54: warning: Member operator[](const int32_t &index) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:55: warning: Member operator=(const float *right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:57: warning: Member operator+=(const Vector3D &right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:58: warning: Member operator-=(const Vector3D &right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:59: warning: Member operator*=(const float &right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:60: warning: Member operator/=(const float &right) (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:61: warning: Member operator+(const Vector3D &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:62: warning: Member operator-(const Vector3D &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:63: warning: Member operator-() const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:64: warning: Member operator*(const float &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:65: warning: Member operator/(const float &right) const (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/Vector3D.h:66: warning: Member operator float *() (function) of class cifti::Vector3D is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:39: warning: Member VoxelIJK(int64_t i, int64_t j, int64_t k) (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:41: warning: Member VoxelIJK(const T ijk[3]) (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:46: warning: Member operator<(const VoxelIJK &rhs) const (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:54: warning: Member operator==(const VoxelIJK &rhs) const (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:60: warning: Member operator!=(const VoxelIJK &rhs) const (function) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/VoxelIJK.h:37: warning: Member m_ijk[3] (variable) of struct cifti::VoxelIJK is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:155: warning: Member mandatoryVals (variable) of struct cifti::XmlAttributesResult is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:156: warning: Member optionalVals (variable) of struct cifti::XmlAttributesResult is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:152: warning: Member present (variable) of struct cifti::XmlAttributesResult::OptionalStatus is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Common/XmlAdapter.h:153: warning: Member value (variable) of struct cifti::XmlAttributesResult::OptionalStatus is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/nifti1.h:306: warning: Member extension[4] (variable) of struct cifti::nifti1_extender is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:44: warning: Member m_ecode (variable) of struct cifti::NiftiExtension is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:45: warning: Member m_bytes (variable) of struct cifti::NiftiExtension is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:53: warning: Member read(BinaryFile &inFile) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:54: warning: Member write(BinaryFile &outFile, const int &version=1, const bool &swapEndian=false) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:55: warning: Member canWriteVersion(const int &version) const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:56: warning: Member isSwapped() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:57: warning: Member version() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:59: warning: Member getDimensions() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:60: warning: Member getSForm() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:61: warning: Member getDataOffset() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:62: warning: Member getDataType() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:63: warning: Member getIntentCode() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:64: warning: Member getIntentName() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:65: warning: Member getDataScaling(double &mult, double &offset) const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:66: warning: Member toString() const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:68: warning: Member setDimensions(const std::vector< int64_t > &dimsIn) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:69: warning: Member setSForm(const std::vector< std::vector< float > > &sForm) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:70: warning: Member setIntent(const int32_t &code, const char name[16]) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:71: warning: Member setDataType(const int16_t &type) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:72: warning: Member clearDataScaling() (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:73: warning: Member setDataScaling(const double &mult, const double &offset) (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:77: warning: Member operator==(const NiftiHeader &rhs) const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:78: warning: Member operator!=(const NiftiHeader &rhs) const (function) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/Nifti/NiftiHeader.h:50: warning: Member m_extensions (variable) of struct cifti::NiftiHeader is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:62: warning: Member openRead(const AString &filename) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:63: warning: Member writeNew(const AString &filename, const NiftiHeader &header, const int &version=1, const bool &withRead=false, const bool &swapEndian=false) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:64: warning: Member getFilename() const (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:65: warning: Member overrideDimensions(const std::vector< int64_t > &newDims) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:66: warning: Member close() (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:67: warning: Member getHeader() const (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:68: warning: Member getDimensions() const (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:69: warning: Member getNumComponents() const (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:73: warning: Member readData(T *dataOut, const int &fullDims, const std::vector< int64_t > &indexSelect, const bool &tolerateShortRead=false) (function) of class cifti::NiftiIO is not documented. /casa/host/src/aims/aims-free/master/aimsgui/src/CiftiLib-1.5.1/src/NiftiIO.h:75: warning: Member writeData(const T *dataIn, const int &fullDims, const std::vector< int64_t > &indexSelect) (function) of class cifti::NiftiIO is not documented. [ 24%] Built target aims-free_target_14 [ 24%] Built target aimsdata-sphinx [ 24%] Built target aims-free_target_13 [ 24%] Built target doxygen [ 24%] Built target aims-free_target_23 [ 24%] Built target aims-free_target_18 [ 24%] Built target aims-free_target_32 [ 28%] Built target anatomist-free_target_1 [ 28%] Built target run_uic building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 1 source files that are out of date updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] tutorial/capsul_tutorial [ 28%] Built target highres-cortex_target_7 [ 32%] Built target morphologist-nonfree_target_1 [ 32%] Built target VipPreprocessing [ 32%] Built target morphologist-nonfree_target_2 [ 32%] Built target sulci-nonfree_target_1 [ 36%] Built target sulci-nonfree_target_4 QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa' Attribute Qt::AA_ShareOpenGLContexts must be set before QCoreApplication is created. [ 36%] Built target brainrat-private_target_7 [ 36%] Built target brainrat-private_target_6 [ 36%] Built target bioprocessing_target_9 [ 36%] Built target primatologist-gpl_target_7 [ 36%] Built target cortical_surface-nonfree_target_1 [ 36%] Built target constellation-nonfree_target_1 loading pickled environment... done [ 36%] Built target anatomist-free-sphinx [ 36%] Built target brainvisa-spm-doc [ 36%] Built target constellation-gpl-doc loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/capsul-2.6/objects.inv... loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... [ 36%] Built target cortical_surface-gpl-doc [ 36%] Built target disco-doc [ 36%] Built target brainvisa_freesurfer-doc [ 36%] Create "share/doc/5.2" [ 36%] Create "share/doc/5.2" [ 36%] Create "share/doc/6.0" [ 36%] Built target anatomist-free-usrdoc [ 36%] Built target aims-free-usrdoc [ 36%] Built target brainvisa-cmake-usrdoc QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa' [ 36%] Create "share/doc/5.2" [ 36%] Create "share/doc/5.2" [ 36%] Create "share/doc/5.2" [ 36%] Built target morphologist-ui-usrdoc [ 36%] Built target brainrat-gpl-usrdoc [ 36%] Built target axon-usrdoc [ 36%] Create "share/doc/3.2" [ 36%] Built target soma-io-doxygen [ 36%] Create "share/doc/5.3" [ 36%] Built target soma-base-devdoc [ 36%] Built target casa-distro-devdoc [ 36%] Create "share/doc/3.3" [ 36%] Create "share/doc/3.0" [ 36%] Built target soma-workflow-devdoc [ 36%] Built target cartodata-doxygen [ 36%] Built target populse-db-devdoc [ 36%] Built target ecat+-doxygen [ 36%] Generating ../../../../share/doc/aimsdata-5.2/doxygen/index.html [ 36%] Create "share/doc/5.2" [ 36%] Built target brainvisa-cmake-doc [ 36%] Built target morphologist-nonfree-devdoc warning: Tag 'DETAILS_AT_TOP' at line 162 of file '/casa/host/build/build_files/aims-free/aimsdata/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 408 of file '/casa/host/build/build_files/aims-free/aimsdata/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 653 of file '/casa/host/build/build_files/aims-free/aimsdata/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 708 of file '/casa/host/build/build_files/aims-free/aimsdata/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 948 of file '/casa/host/build/build_files/aims-free/aimsdata/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 954 of file '/casa/host/build/build_files/aims-free/aimsdata/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1115 of file '/casa/host/build/build_files/aims-free/aimsdata/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1136 of file '/casa/host/build/build_files/aims-free/aimsdata/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! [ 36%] Built target casa-distro-doc [ 36%] Built target soma-base-doc Doxygen version used: 1.9.1 Searching for include files... 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in directory /casa/host/build/include/aims/spam Searching for files in directory[ 36%] Built target soma-workflow-doc /casa/host/build/include/aims/sparsematrix Searching for files in directory /casa/host/build/include/aims/talairach Searching for files in directory /casa/host/build/include/aims/texdata Searching for files in directory /casa/host/build/include/aims/threshold Searching for files in directory /casa/host/build/include/aims/topology Searching for files in directory /casa/host/build/include/aims/transform Searching for files in directory /casa/host/build/include/aims/transformation Searching for files in directory /casa/host/build/include/aims/utility Searching for files in directory /casa/host/build/include/aims/vector Searching for files in directory /casa/host/build/include/anafold Searching for files in directory /casa/host/build/include/anafold/fgraph Searching for files in directory /casa/host/build/include/anafold/module Searching for files in directory 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directory /casa/host/build/include/pyaims/object Searching for files in directory /casa/host/build/include/pyaims/plugin Searching for files in directory /casa/host/build/include/pyaims/vector Searching for files in directory /casa/host/build/include/pyanatomist Searching for files in directory /casa/host/build/include/pyanatomist/module Searching for files in directory /casa/host/build/include/pysigraph Searching for files in directory /casa/host/build/include/si Searching for files in directory /casa/host/build/include/si/descr Searching for files in directory /casa/host/build/include/si/dimreductor Searching for files in directory /casa/host/build/include/si/domain Searching for files in directory /casa/host/build/include/si/finder Searching for files in directory /casa/host/build/include/si/fold Searching for files in directory /casa/host/build/include/si/functionalsketch Searching for files in directory /casa/host/build/include/si/global Searching for files in directory /casa/host/build/include/si/graph Searching for files in directory /casa/host/build/include/si/gyrus Searching for files in directory /casa/host/build/include/si/learnable Searching for files in directory /casa/host/build/include/si/learner Searching for files in directory /casa/host/build/include/si/mixer Searching for files in directory /casa/host/build/include/si/model Searching for files in directory /casa/host/build/include/si/optimizer Searching for files in directory /casa/host/build/include/si/plugin Searching for files in directory /casa/host/build/include/si/roi Searching for files in directory /casa/host/build/include/si/sisvm Searching for files in directory /casa/host/build/include/si/subadaptive Searching for files in directory /casa/host/build/include/si/sulcalsketch Searching for files in directory /casa/host/build/include/si/sulcalSketch_Arnaud Searching for files in directory /casa/host/build/include/soma-io Searching for files in directory /casa/host/build/include/soma-io/allocator Searching for files in directory /casa/host/build/include/soma-io/checker Searching for files in directory /casa/host/build/include/soma-io/Color Searching for files in directory /casa/host/build/include/soma-io/config Searching for files in directory /casa/host/build/include/soma-io/Container Searching for files in directory /casa/host/build/include/soma-io/datasource Searching for files in directory /casa/host/build/include/soma-io/datasourceinfo Searching for files in directory /casa/ho[autosummary] generating autosummary for: core_api.rst, index.rst [ 36%] Built target ecat [ 36%] Built target cartobase_0 st/build/include/soma-io/Dicom Searching for files in directory /casa/host/build/include/soma-io/Dicom/Bruker Searching for files in directory /casa/host/build/include/soma-io/Dicom/DcmtkJpeg2000 Searching for files in directory /casa/host/build/include/soma-io/Dicom/GE Searching for files in directory 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directory /casa/host/build/include/vip/deriche Searching for files in directory /casa/host/build/include/vip/eigen Searching for files in directory /casa/host/build/include/vip/epidistorsion Searching for files in directory /casa/host/build/include/vip/fold_arg Searching for files in directory /casa/host/build/include/vip/geometry Searching for files in directory /casa/host/build/include/vip/histo Searching for files in directory /casa/host/build/include/vip/linresamp Searching for files in directory /casa/host/build/include/vip/matching Searching for files in directory /casa/host/build/include/vip/math Searching for files in directory /casa/host/build/include/vip/nomen Searching for files in directory /casa/host/build/include/vip/object Searching for files in directory /casa/host/build/include/vip/pca Searching for files in directory /casa/host/build/include/vip/pvec Searching for files in directory /casa/host/build/include/vip/skeleton Searching for files in directory /casa/host/build/include/vip/splineresamp Searching for files in directory /casa/host/build/include/vip/spm Searching for files in directory /casa/host/build/include/vip/TivoliIO Searching for files in directory /casa/host/build/include/vip/topology Searching for files in directory /casa/host/build/include/vip/transform Searching for files in directory /casa/host/build/include/vip/util Searching for files in directory /casa/host/build/include/vip/vcomplex Searching for files in directory /casa/host/build/include/vip/volume Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Reading and parsing tag files Reading tag file '/casa/host/build/share/doc/graph-5.2/doxygen/gr[autosummary] generating autosummary for: capsul.rst, developer_manual.rst, index.rst, python.rst, python_bv_configuration.rst, python_bv_data.rst, python_bv_data_gui.rst, python_bv_processing.rst, python_bv_processing_gui.rst, python_bv_tools.rst, usecases.rst, usecases_nb.ipynb [ 36%] Built target neuron [ 36%] Built target vip-generated [ 36%] Built target brainrat-gpl-doc [ 36%] Built target morphologist-nonfree-doc [ 36%] Create "share/doc/5.2" [ 36%] Built target cartobase_1 [ 36%] Built target soma-io-devdoc [ 36%] Built target ecat+ aph.tag', location '../../graph-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag', location '../../cartobase-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/soma-io-5.2/doxygen/soma-io.tag', location '../../soma-io-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/cartodata-5.2/doxygen/cartodata.tag', location '../../cartodata-5.2/doxygen'... Parsing files Preprocessing /casa/host/build/include/aims/bucket/bucket_g.h... Parsing file /casa/host/build/include/aims/bucket/bucket_g.h... Preprocessing /casa/host/build/include/aims/data/data_g.h... Parsing file /casa/host/build/include/aims/data/data_g.h... Preprocessing /casa/host/build/include/aims/border/borderfiller.h... Parsing file /casa/host/build/include/aims/border/borderfiller.h... Preprocessing /casa/host/build/include/aims/border/borderiterator.h... Parsing file /casa/host/build/include/aims/border/borderiterator.h... Preprocessing /casa/host/build/include/aims/bucket/bucket.h... Parsing file /casa/host/build/include/aims/bucket/bucket.h... Preprocessing /casa/host/build/include/aims/bucket/bucketMap.h... Parsing file /casa/host/build/include/aims/bucket/bucketMap.h... Preprocessing /casa/host/build/include/aims/bucket/bucketutil.h... Parsing file /casa/host/build/include/aims/bucket/bucketutil.h... Preprocessing /casa/host/build/include/aims/bucket/bucketutil_d.h... Parsing file /casa/host/build/include/aims/bucket/bucketutil_d.h... Preprocessing /casa/host/build/include/aims/bucket/item.h... Parsing file /casa/host/build/include/aims/bucket/item.h... Preprocessing /casa/host/build/include/aims/bucket/sparsevolume.h... Parsing file /casa/host/build/include/aims/bucket/sparsevolume.h... Preprocessing /casa/host/build/include/aims/bucket/bucketgen.h... Parsing file /casa/host/build/include/aims/bucket/bucketgen.h... Preprocessing /casa/host/build/include/aims/color/colormap.h... Parsing file /casa/host/build/include/aims/color/colormap.h... Preprocessing /casa/host/build/include/aims/config/aimsdata_config.h... Parsing file /casa/host/build/include/aims/config/aimsdata_config.h... Preprocessing /casa/host/build/include/aims/connectivity/connectivity.h... Parsing file /casa/host/build/include/aims/connectivity/connectivity.h... Preprocessing /casa/host/build/include/aims/connectivity/connectivity_g.h... Parsing file /casa/host/build/include/aims/connectivity/connectivity_g.h... Preprocessing /casa/host/build/include/aims/connectivity/component.h... Parsing file /casa/host/build/include/aims/connectivity/component.h... Preprocessing /casa/host/build/include/aims/connectivity/component_d.h... Parsing file /casa/host/build/include/aims/connectivity/component_d.h... Preprocessing /casa/host/build/include/aims/connectivity/structuring_element.h... Parsing file /casa/host/build/include/aims/connectivity/structuring_element.h... Preprocessing /casa/host/build/include/aims/curve/curve.h... Parsing file /casa/host/build/include/aims/curve/curve.h... Preprocessing /casa/host/build/include/aims/data/cartodatavolume.h... Parsing file /casa/host/build/include/aims/data/cartodatavolume.h... Preprocessing /casa/host/build/include/aims/data/data.h... Parsing file /casa/host/build/include/aims/data/data.h... Preprocessing /casa/host/build/include/aims/data/fastAllocationData.h... Parsing file /casa/host/build/include/aims/data/fastAllocationData.h... Preprocessing /casa/host/build/include/aims/data/header.h... Parsing file /casa/host/build/include/aims/data/header.h... Preprocessing /casa/host/build/include/aims/data/headerutil.h... Parsing file /casa/host/build/include/aims/data/headerutil.h... Preprocessing /casa/host/build/include/aims/data/pheader.h... Parsing file /casa/host/build/include/aims/data/pheader.h... Preprocessing /casa/host/build/include/aims/data/pheader_doc.h... Parsing file /casa/host/build/include/aims/data/pheader_doc.h... Preprocessing /casa/host/build/include/aims/data/sliceformatheader.h... Parsing file /casa/host/build/include/aims/data/sliceformatheader.h... Preprocessing /casa/host/bui[ 36%] Built target neurlearn [ 36%] Built target neurmakenet Starting Anatomist..... ld/include/aims/data/volumemanip.h... Parsing file /casa/host/build/include/aims/data/volumemanip.h... Preprocessing /casa/host/build/include/aims/data/volumeoperators_aims.h... Parsing file /casa/host/build/include/aims/data/volumeoperators_aims.h... Preprocessing /casa/host/build/include/aims/def/def_g.h... Parsing file /casa/host/build/include/aims/def/def_g.h... Preprocessing /casa/host/build/include/aims/def/assert.h... Parsing file /casa/host/build/include/aims/def/assert.h... Preprocessing /casa/host/build/include/aims/def/general.h... Parsing file /casa/host/build/include/aims/def/general.h... Preprocessing /casa/host/build/include/aims/def/info.h... Parsing file /casa/host/build/include/aims/def/info.h... Preprocessing /casa/host/build/include/aims/def/path.h... Parsing file /casa/host/build/include/aims/def/path.h... Preprocessing /casa/host/build/include/aims/def/settings.h... Parsing file /casa/host/build/include/aims/def/settings.h... Preprocessing /casa/host/build/include/aims/doc/aimsdata_doc.h... Parsing file /casa/host/build/include/aims/doc/aimsdata_doc.h... Preprocessing /casa/host/build/include/aims/features/features.h... Parsing file /casa/host/build/include/aims/features/features.h... Preprocessing /casa/host/build/include/aims/features/scalar_set_features.h... Parsing file /casa/host/build/include/aims/features/scalar_set_features.h... Preprocessing /casa/host/build/include/aims/features/point_set_features.h... Parsing file /casa/host/build/include/aims/features/point_set_features.h... Preprocessing /casa/host/build/include/aims/features/roi_features.h... Parsing file /casa/host/build/include/aims/features/roi_features.h... Preprocessing /casa/host/build/include/aims/fibers/bundles.h... Parsing file /casa/host/build/include/aims/fibers/bundles.h... Preprocessing /casa/host/build/include/aims/fibers/bundles_features.h... Parsing file /casa/host/build/include/aims/fibers/bundles_features.h... Preprocessing /casa/host/build/include/aims/fibers/bundlesFusion.h... Parsing file /casa/host/build/include/aims/fibers/bundlesFusion.h... Preprocessing /casa/host/build/include/aims/fibers/bundleRegroup.h... Parsing file /casa/host/build/include/aims/fibers/bundleRegroup.h... Preprocessing /casa/host/build/include/aims/fibers/bundleSampler.h... Parsing file /casa/host/build/include/aims/fibers/bundleSampler.h... Preprocessing /casa/host/build/include/aims/fibers/bundlesSlicer.h... Parsing file /casa/host/build/include/aims/fibers/bundlesSlicer.h... Preprocessing /casa/host/build/include/aims/fibers/fiberOversampler.h... Parsing file /casa/host/build/include/aims/fibers/fiberOversampler.h... Preprocessing /casa/host/build/include/aims/fibers/mrtrixbundlereader.h... Parsing file /casa/host/build/include/aims/fibers/mrtrixbundlereader.h... Preprocessing /casa/host/build/include/aims/fibers/trackvisbundlereader.h... Parsing file /casa/host/build/include/aims/fibers/trackvisbundlereader.h... Preprocessing /casa/host/build/include/aims/getopt/getopt2.h... Parsing file /casa/host/build/include/aims/getopt/getopt2.h... Preprocessing /casa/host/build/include/aims/getopt/getoptProcess.h... Parsing file /casa/host/build/include/aims/getopt/getoptProcess.h... Preprocessing /casa/host/build/include/aims/graph/graphmanip.h... Parsing file /casa/host/build/include/aims/graph/graphmanip.h... Preprocessing /casa/host/build/include/aims/graph/graphmanip_d.h... Parsing file /casa/host/build/include/aims/graph/graphmanip_d.h... Preprocessing /casa/host/build/include/aims/hsv/hsv.h... Parsing file /casa/host/build/include/aims/hsv/hsv.h... Preprocessing /casa/host/build/include/aims/io/dbh.h... Parsing file /casa/host/build/include/aims/io/dbh.h... Preprocessing /casa/host/build/include/aims/io/aimsGraphR.h... Parsing file /casa/host/build/include/aims/io/aimsGraphR.h... Preprocessing /casa/host/build/include/aims/io/aimsGraphR_d.h... Parsing file /casa/host/build/include/aims/io/aimsGraphR_d.h... Preprocessing /casa/host/build/include/aims/io/aimsGraphW.h... Parsing file /casa/host/build/include/aims/io/aimsGraphW.h... Preprocessi[ 36%] Built target soma-io-doc [ 36%] Built target neurpatimport ng /casa/host/build/include/aims/io/aimsGraphW_d.h... Parsing file /casa/host/build/include/aims/io/aimsGraphW_d.h... Preprocessing /casa/host/build/include/aims/io/apcreader.h... Parsing file /casa/host/build/include/aims/io/apcreader.h... Preprocessing /casa/host/build/include/aims/io/argheader.h... Parsing file /casa/host/build/include/aims/io/argheader.h... Preprocessing /casa/host/build/include/aims/io/argR.h... Parsing file /casa/host/build/include/aims/io/argR.h... Preprocessing /casa/host/build/include/aims/io/argW.h... Parsing file /casa/host/build/include/aims/io/argW.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_bucket.h... Parsing file /casa/host/build/include/aims/io/baseFormats_bucket.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_bucket_d.h... Parsing file /casa/host/build/include/aims/io/baseFormats_bucket_d.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_cartovolume.h... Parsing file /casa/host/build/include/aims/io/baseFormats_cartovolume.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_genericobject.h... Parsing file /casa/host/build/include/aims/io/baseFormats_genericobject.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_graph.h... Parsing file /casa/host/build/include/aims/io/baseFormats_graph.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_hierarchy.h... Parsing file /casa/host/build/include/aims/io/baseFormats_hierarchy.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_mesh.h... Parsing file /casa/host/build/include/aims/io/baseFormats_mesh.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_mesh_d.h... Parsing file /casa/host/build/include/aims/io/baseFormats_mesh_d.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_sparsematrix.h... Parsing file /casa/host/build/include/aims/io/baseFormats_sparsematrix.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_syntax.h... Parsing file /casa/host/build/include/aims/io/baseFormats_syntax.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_texture.h... Parsing file /casa/host/build/include/aims/io/baseFormats_texture.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_texture_d.h... Parsing file /casa/host/build/include/aims/io/baseFormats_texture_d.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_volume.h... Parsing file /casa/host/build/include/aims/io/baseFormats_volume.h... Preprocessing /casa/host/build/include/aims/io/baseFormats_volume_d.h... Parsing file /casa/host/build/include/aims/io/baseFormats_volume_d.h... Preprocessing /casa/host/build/include/aims/io/bckheader.h... Parsing file /casa/host/build/include/aims/io/bckheader.h... Preprocessing /casa/host/build/include/aims/io/bckItemR.h... Parsing file /casa/host/build/include/aims/io/bckItemR.h... Preprocessing /casa/host/build/include/aims/io/bckItemW.h... Parsing file /casa/host/build/include/aims/io/bckItemW.h... Preprocessing /casa/host/build/include/aims/io/bckR.h... Parsing file /casa/host/build/include/aims/io/bckR.h... Preprocessing /casa/host/build/include/aims/io/bckW.h... Parsing file /casa/host/build/include/aims/io/bckW.h... Preprocessing /casa/host/build/include/aims/io/bckMapR.h... Parsing file /casa/host/build/include/aims/io/bckMapR.h... Preprocessing /casa/host/build/include/aims/io/bckMapW.h... Parsing file /casa/host/build/include/aims/io/bckMapW.h... Preprocessing /casa/host/build/include/aims/io/byteswap.h... Parsing file /casa/host/build/include/aims/io/byteswap.h... Preprocessing /casa/host/build/include/aims/io/channelR.h... Parsing file /casa/host/build/include/aims/io/channelR.h... Preprocessing /casa/host/build/include/aims/io/coarseR.h... Parsing file /casa/host/build/include/aims/io/coarseR.h... Preprocessing /casa/host/build/include/aims/io/cmapR.h... Parsing file /casa/host/build/include/aims/io/cmapR.h... Preprocessing /casa/host/build/include/aims/io/cmapW.h... Parsing file /casa/host/build/include/aims/io/cmapW.h... Preprocessing /casa/host/build/include/aims/io/defaultItemR.[ 36%] Built target EcatVolMIProj [ 36%] Built target cartobase h... Parsing file /casa/host/build/include/aims/io/defaultItemR.h... Preprocessing /casa/host/build/include/aims/io/defaultItemW.h... Parsing file /casa/host/build/include/aims/io/defaultItemW.h... Preprocessing /casa/host/build/include/aims/io/directory.h... Parsing file /casa/host/build/include/aims/io/directory.h... Preprocessing /casa/host/build/include/aims/io/dtitensorItemR.h... Parsing file /casa/host/build/include/aims/io/dtitensorItemR.h... Preprocessing /casa/host/build/include/aims/io/dtitensorItemW.h... Parsing file /casa/host/build/include/aims/io/dtitensorItemW.h... Preprocessing /casa/host/build/include/aims/io/finder.h... Parsing file /casa/host/build/include/aims/io/finder.h... Preprocessing /casa/host/build/include/aims/io/finderFormats.h... Parsing file /casa/host/build/include/aims/io/finderFormats.h... Preprocessing /casa/host/build/include/aims/io/fileFormat.h... Parsing file /casa/host/build/include/aims/io/fileFormat.h... Preprocessing /casa/host/build/include/aims/io/fileFormat_d.h... Parsing file /casa/host/build/include/aims/io/fileFormat_d.h... Preprocessing /casa/host/build/include/aims/io/fileFormat_cartovolume_d.h... Parsing file /casa/host/build/include/aims/io/fileFormat_cartovolume_d.h... Preprocessing /casa/host/build/include/aims/io/ge_imageFileOffsets.h... Parsing file /casa/host/build/include/aims/io/ge_imageFileOffsets.h... Preprocessing /casa/host/build/include/aims/io/ge_imghdr.h... Parsing file /casa/host/build/include/aims/io/ge_imghdr.h... Preprocessing /casa/host/build/include/aims/io/genesisheader.h... Parsing file /casa/host/build/include/aims/io/genesisheader.h... Preprocessing /casa/host/build/include/aims/io/genesisR.h... Parsing file /casa/host/build/include/aims/io/genesisR.h... Preprocessing /casa/host/build/include/aims/io/graphBundlesFormat.h... Parsing file /casa/host/build/include/aims/io/graphBundlesFormat.h... Preprocessing /casa/host/build/include/aims/io/hieR.h... Parsing file /casa/host/build/include/aims/io/hieR.h... Preprocessing /casa/host/build/include/aims/io/imasparseheader.h... Parsing file /casa/host/build/include/aims/io/imasparseheader.h... Preprocessing /casa/host/build/include/aims/io/io_g.h... Parsing file /casa/host/build/include/aims/io/io_g.h... Preprocessing /casa/host/build/include/aims/io/iooptions.h... Parsing file /casa/host/build/include/aims/io/iooptions.h... Preprocessing /casa/host/build/include/aims/io/itemR.h... Parsing file /casa/host/build/include/aims/io/itemR.h... Preprocessing /casa/host/build/include/aims/io/itemR_stl.h... Parsing file /casa/host/build/include/aims/io/itemR_stl.h... Preprocessing /casa/host/build/include/aims/io/itemW.h... Parsing file /casa/host/build/include/aims/io/itemW.h... Preprocessing /casa/host/build/include/aims/io/itemW_stl.h... Parsing file /casa/host/build/include/aims/io/itemW_stl.h... Preprocessing /casa/host/build/include/aims/io/labelImage.h... Parsing file /casa/host/build/include/aims/io/labelImage.h... Preprocessing /casa/host/build/include/aims/io/listItemR.h... Parsing file /casa/host/build/include/aims/io/listItemR.h... Preprocessing /casa/host/build/include/aims/io/listItemW.h... Parsing file /casa/host/build/include/aims/io/listItemW.h... Preprocessing /casa/host/build/include/aims/io/macosxbugs.h... Parsing file /casa/host/build/include/aims/io/macosxbugs.h... Preprocessing /casa/host/build/include/aims/io/mniobjheader.h... Parsing file /casa/host/build/include/aims/io/mniobjheader.h... Preprocessing /casa/host/build/include/aims/io/povW.h... Parsing file /casa/host/build/include/aims/io/povW.h... Preprocessing /casa/host/build/include/aims/io/scaledcoding.h... Parsing file /casa/host/build/include/aims/io/scaledcoding.h... Preprocessing /casa/host/build/include/aims/io/selectionr.h... Parsing file /casa/host/build/include/aims/io/selectionr.h... Preprocessing /casa/host/build/include/aims/io/selectionw.h... Parsing file /casa/host/build/include/aims/io/selectionw.h... Preprocessing /casa/host/build/include/aims/io/spmR.h... Parsing file /casa/host/build/include/aims/io/spmR.h... Prepr[ 36%] Built target EcatVolReverse ocessing /casa/host/build/include/aims/io/spmR_d.h... Parsing file /casa/host/build/include/aims/io/spmR_d.h... Preprocessing /casa/host/build/include/aims/io/spmheader.h... Parsing file /casa/host/build/include/aims/io/spmheader.h... Preprocessing /casa/host/build/include/aims/io/spmW.h... Parsing file /casa/host/build/include/aims/io/spmW.h... Preprocessing /casa/host/build/include/aims/io/spmW_d.h... Parsing file /casa/host/build/include/aims/io/spmW_d.h... Preprocessing /casa/host/build/include/aims/io/spmattribconverter.h... Parsing file /casa/host/build/include/aims/io/spmattribconverter.h... Preprocessing /casa/host/build/include/aims/io/triederItemR.h... Parsing file /casa/host/build/include/aims/io/triederItemR.h... Preprocessing /casa/host/build/include/aims/io/triederItemW.h... Parsing file /casa/host/build/include/aims/io/triederItemW.h... Preprocessing /casa/host/build/include/aims/io/reader.h... Parsing file /casa/host/build/include/aims/io/reader.h... Preprocessing /casa/host/build/include/aims/io/reader_d.h... Parsing file /casa/host/build/include/aims/io/reader_d.h... Preprocessing /casa/host/build/include/aims/io/readerasobject.h... Parsing file /casa/host/build/include/aims/io/readerasobject.h... Preprocessing /casa/host/build/include/aims/io/writer.h... Parsing file /casa/host/build/include/aims/io/writer.h... Preprocessing /casa/host/build/include/aims/io/writer_d.h... Parsing file /casa/host/build/include/aims/io/writer_d.h... Preprocessing /casa/host/build/include/aims/io/meshheader.h... Parsing file /casa/host/build/include/aims/io/meshheader.h... Preprocessing /casa/host/build/include/aims/io/meshR.h... Parsing file /casa/host/build/include/aims/io/meshR.h... Preprocessing /casa/host/build/include/aims/io/meshW.h... Parsing file /casa/host/build/include/aims/io/meshW.h... Preprocessing /casa/host/build/include/aims/io/roiR.h... Parsing file /casa/host/build/include/aims/io/roiR.h... Preprocessing /casa/host/build/include/aims/io/tensorItemR.h... Parsing file /casa/host/build/include/aims/io/tensorItemR.h... Preprocessing /casa/host/build/include/aims/io/tensorItemW.h... Parsing file /casa/host/build/include/aims/io/tensorItemW.h... Preprocessing /casa/host/build/include/aims/io/texheader.h... Parsing file /casa/host/build/include/aims/io/texheader.h... Preprocessing /casa/host/build/include/aims/io/texR.h... Parsing file /casa/host/build/include/aims/io/texR.h... Preprocessing /casa/host/build/include/aims/io/texW.h... Parsing file /casa/host/build/include/aims/io/texW.h... Preprocessing /casa/host/build/include/aims/io/triheader.h... Parsing file /casa/host/build/include/aims/io/triheader.h... Preprocessing /casa/host/build/include/aims/io/triR.h... Parsing file /casa/host/build/include/aims/io/triR.h... Preprocessing /casa/host/build/include/aims/io/triW.h... Parsing file /casa/host/build/include/aims/io/triW.h... Preprocessing /casa/host/build/include/aims/io/process.h... Parsing file /casa/host/build/include/aims/io/process.h... Preprocessing /casa/host/build/include/aims/io/datatypecode.h... Parsing file /casa/host/build/include/aims/io/datatypecode.h... Preprocessing /casa/host/build/include/aims/io/wavefrontheader.h... Parsing file /casa/host/build/include/aims/io/wavefrontheader.h... Preprocessing /casa/host/build/include/aims/io/wavefrontmeshW.h... Parsing file /casa/host/build/include/aims/io/wavefrontmeshW.h... Preprocessing /casa/host/build/include/aims/io/wavefrontmeshR.h... Parsing file /casa/host/build/include/aims/io/wavefrontmeshR.h... Preprocessing /casa/host/build/include/aims/io_soma/fsannotformatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/fsannotformatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/fsannotformatreader.h... Parsing file /casa/host/build/include/aims/io_soma/fsannotformatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/fsannotformatreader_d.h... Parsing file /casa/host/build/include/aims/io_soma/fsannotformatreader_d.h... Preprocessing /casa/host/build/include/aims/io_soma/fscurvformatchecker.h... Parsing file[ 36%] Built target soma-io /casa/host/build/include/aims/io_soma/fscurvformatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/fscurvformatreader.h... Parsing file /casa/host/build/include/aims/io_soma/fscurvformatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/fscurvformatreader_d.h... Parsing file /casa/host/build/include/aims/io_soma/fscurvformatreader_d.h... Preprocessing /casa/host/build/include/aims/io_soma/fssurfformatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/fssurfformatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/fssurfformatreader.h... Parsing file /casa/host/build/include/aims/io_soma/fssurfformatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/fssurfformatreader_d.h... Parsing file /casa/host/build/include/aims/io_soma/fssurfformatreader_d.h... Preprocessing /casa/host/build/include/aims/io_soma/ltaformatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/ltaformatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/ltaformatreader.h... Parsing file /casa/host/build/include/aims/io_soma/ltaformatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/trmformatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/trmformatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/trmformatwriter.h... Parsing file /casa/host/build/include/aims/io_soma/trmformatwriter.h... Preprocessing /casa/host/build/include/aims/io_soma/trmformatreader.h... Parsing file /casa/host/build/include/aims/io_soma/trmformatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/trmgraphformatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/trmgraphformatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/trmgraphformatreader.h... Parsing file /casa/host/build/include/aims/io_soma/trmgraphformatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/trmgraphformatwriter.h... Parsing file /casa/host/build/include/aims/io_soma/trmgraphformatwriter.h... Preprocessing /casa/host/build/include/aims/io_soma/trmingraphformatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/trmingraphformatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/trmingraphformatreader.h... Parsing file /casa/host/build/include/aims/io_soma/trmingraphformatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/trm_compose_formatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/trm_compose_formatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/trm_compose_formatreader.h... Parsing file /casa/host/build/include/aims/io_soma/trm_compose_formatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/trm_header_formatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/trm_header_formatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/trm_header_formatreader.h... Parsing file /casa/host/build/include/aims/io_soma/trm_header_formatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/xfmformatchecker.h... Parsing file /casa/host/build/include/aims/io_soma/xfmformatchecker.h... Preprocessing /casa/host/build/include/aims/io_soma/xfmformatreader.h... Parsing file /casa/host/build/include/aims/io_soma/xfmformatreader.h... Preprocessing /casa/host/build/include/aims/io_soma/xfmformatwriter.h... Parsing file /casa/host/build/include/aims/io_soma/xfmformatwriter.h... Preprocessing /casa/host/build/include/aims/math/dtitensor.h... Parsing file /casa/host/build/include/aims/math/dtitensor.h... Preprocessing /casa/host/build/include/aims/math/gausslu.h... Parsing file /casa/host/build/include/aims/math/gausslu.h... Preprocessing /casa/host/build/include/aims/math/integrator.h... Parsing file /casa/host/build/include/aims/math/integrator.h... Preprocessing /casa/host/build/include/aims/math/lagrange.h... Parsing file /casa/host/build/include/aims/math/lagrange.h... Preprocessing /casa/host/build/include/aims/math/mathelem.h... Parsing file /casa/host/build/include/aims/math/mathelem.h... Preprocessing /casa/host/build/include/aims/math/mathelemrgb.h... Parsing file /casa/host/build/include/aims/math/mathelemrgb.h... Preprocessing /casa/host/build/include/aims/math/romberg.h... Parsing file /casa/host/build/include/aims/math/romberg.h... Preprocessing /casa/host/build/include/aims/math/rombergitg.h... Parsing file /casa/host/build/include/aims/math/rombergitg.h... Preprocessing /casa/host/build/include/aims/math/tensor.h... Parsing file /casa/host/build/include/aims/math/tensor.h... Preprocessing /casa/host/build/include/aims/math/trapezeitg.h... Parsing file /casa/host/build/include/aims/math/trapezeitg.h... Preprocessing /casa/host/build/include/aims/math/trieder.h... Parsing file /casa/host/build/include/aims/math/trieder.h... Preprocessing /casa/host/build/include/aims/memmap/allocator.h... Parsing file /casa/host/build/include/aims/memmap/allocator.h... Preprocessing /casa/host/build/include/aims/mesh/cutmesh.h... Parsing file /casa/host/build/include/aims/mesh/cutmesh.h... Preprocessing /casa/host/build/include/aims/mesh/cutmesh_d.h... Parsing file /casa/host/build/include/aims/mesh/cutmesh_d.h... Preprocessing /casa/host/build/include/aims/mesh/mesh_rasterization_d.h... Parsing file /casa/host/build/include/aims/mesh/mesh_rasterization_d.h... Preprocessing /casa/host/build/include/aims/mesh/surface_g.h... Parsing file /casa/host/build/include/aims/mesh/surface_g.h... Preprocessing /casa/host/build/include/aims/mesh/surface.h... Parsing file /casa/host/build/include/aims/mesh/surface.h... Preprocessing /casa/host/build/include/aims/mesh/surfacegen.h... Parsing file /casa/host/build/include/aims/mesh/surfacegen.h... Preprocessing /casa/host/build/include/aims/mesh/surfacemanip.h... Parsing file /casa/host/build/include/aims/mesh/surfacemanip.h... Preprocessing /casa/host/build/include/aims/mesh/surfacemanip_d.h... Parsing file /casa/host/build/include/aims/mesh/surfacemanip_d.h... Preprocessing /casa/host/build/include/aims/mesh/surfaceOperation.h... Parsing file /casa/host/build/include/aims/mesh/surfaceOperation.h... Preprocessing /casa/host/build/include/aims/mesh/texture.h... Parsing file /casa/host/build/include/aims/mesh/texture.h... Preprocessing /casa/host/build/include/aims/mesh/texturetools.h... Parsing file /casa/host/build/include/aims/mesh/texturetools.h... Preprocessing /casa/host/build/include/aims/mesh/tex2graph.h... Parsing file /casa/host/build/include/aims/mesh/tex2graph.h... Preprocessing /casa/host/build/include/aims/mesh/tex2graph_d.h... Parsing file /casa/host/build/include/aims/mesh/tex2graph_d.h... Preprocessing /casa/host/build/include/aims/meshprojection/meshprojection.h... Parsing file /casa/host/build/include/aims/meshprojection/meshprojection.h... Preprocessing /casa/host/build/include/aims/meshprojection/meshprojection_d.h... Parsing file /casa/host/build/include/aims/meshprojection/meshprojection_d.h... Preprocessing /casa/host/build/include/aims/resampling/mask.h... Parsing file /casa/host/build/include/aims/resampling/mask.h... Preprocessing /casa/host/build/include/aims/resampling/mask_d.h... Parsing file /casa/host/build/include/aims/resampling/mask_d.h... Preprocessing /casa/host/build/include/aims/resampling/motion.h... Parsing file /casa/host/build/include/aims/resampling/motion.h... Preprocessing /casa/host/build/include/aims/resampling/linearInterpolator.h... Parsing file /casa/host/build/include/aims/resampling/linearInterpolator.h... Preprocessing /casa/host/build/include/aims/resampling/quaternion.h... Parsing file /casa/host/build/include/aims/resampling/quaternion.h... Preprocessing /casa/host/build/include/aims/resampling/standardreferentials.h... Parsing file /casa/host/build/include/aims/resampling/standardreferentials.h... Preprocessing /casa/host/build/include/aims/rgb/rgb.h... Parsing file /casa/host/build/include/aims/rgb/rgb.h... Preprocessing /casa/host/build/include/aims/rgb/rgbnorm.h... Parsing file /casa/host/build/include/aims/rgb/rgbnorm.h... Preprocessing /casa/host/build/include/aims/roi/hie.h... Parsing file /casa/host/build/include/aims/roi/hie.h... Preprocessing /casa//casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:44,740::INFO::Pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.brainorientation.BrainOrientation.png'. [ 40%] Built target graph [ 40%] Built target cartodata host/build/include/aims/roi/roi_g.h... Parsing file /casa/host/build/include/aims/roi/roi_g.h... Preprocessing /casa/host/build/include/aims/roi/fill.h... Parsing file /casa/host/build/include/aims/roi/fill.h... Preprocessing /casa/host/build/include/aims/roi/fill_d.h... Parsing file /casa/host/build/include/aims/roi/fill_d.h... Preprocessing /casa/host/build/include/aims/roi/maskIterator.h... Parsing file /casa/host/build/include/aims/roi/maskIterator.h... Preprocessing /casa/host/build/include/aims/roi/roiIterator.h... Parsing file /casa/host/build/include/aims/roi/roiIterator.h... Preprocessing /casa/host/build/include/aims/roi/roi.h... Parsing file /casa/host/build/include/aims/roi/roi.h... Preprocessing /casa/host/build/include/aims/roi/roi_diff.h... Parsing file /casa/host/build/include/aims/roi/roi_diff.h... Preprocessing /casa/host/build/include/aims/roi/voxelSampling.h... Parsing file /casa/host/build/include/aims/roi/voxelSampling.h... Preprocessing /casa/host/build/include/aims/selection/selection.h... Parsing file /casa/host/build/include/aims/selection/selection.h... Preprocessing /casa/host/build/include/aims/selection/selector.h... Parsing file /casa/host/build/include/aims/selection/selector.h... Preprocessing /casa/host/build/include/aims/sparsematrix/ciftitools.h... Parsing file /casa/host/build/include/aims/sparsematrix/ciftitools.h... Preprocessing /casa/host/build/include/aims/sparsematrix/sparseMatrix.h... Parsing file /casa/host/build/include/aims/sparsematrix/sparseMatrix.h... Preprocessing /casa/host/build/include/aims/sparsematrix/sparseMatrixItemR.h... Parsing file /casa/host/build/include/aims/sparsematrix/sparseMatrixItemR.h... Preprocessing /casa/host/build/include/aims/sparsematrix/sparseMatrixItemW.h... Parsing file /casa/host/build/include/aims/sparsematrix/sparseMatrixItemW.h... Preprocessing /casa/host/build/include/aims/sparsematrix/sparsematrixutil.h... Parsing file /casa/host/build/include/aims/sparsematrix/sparsematrixutil.h... Preprocessing /casa/host/build/include/aims/sparsematrix/sparseordensematrix.h... Parsing file /casa/host/build/include/aims/sparsematrix/sparseordensematrix.h... Preprocessing /casa/host/build/include/aims/texdata/texdata.h... Parsing file /casa/host/build/include/aims/texdata/texdata.h... Preprocessing /casa/host/build/include/aims/transformation/affinetransformation3d.h... Parsing file /casa/host/build/include/aims/transformation/affinetransformation3d.h... Preprocessing /casa/host/build/include/aims/transformation/transformation.h... Parsing file /casa/host/build/include/aims/transformation/transformation.h... Preprocessing /casa/host/build/include/aims/transformation/transformation_chain.h... Parsing file /casa/host/build/include/aims/transformation/transformation_chain.h... Preprocessing /casa/host/build/include/aims/transformation/transformationgraph3d.h... Parsing file /casa/host/build/include/aims/transformation/transformationgraph3d.h... Preprocessing /casa/host/build/include/aims/utility/anytype_reader.h... Parsing file /casa/host/build/include/aims/utility/anytype_reader.h... Preprocessing /casa/host/build/include/aims/utility/anytype_reader_details.h... Parsing file /casa/host/build/include/aims/utility/anytype_reader_details.h... Preprocessing /casa/host/build/include/aims/utility/bininverse.h... Parsing file /casa/host/build/include/aims/utility/bininverse.h... Preprocessing /casa/host/build/include/aims/utility/boundingbox.h... Parsing file /casa/host/build/include/aims/utility/boundingbox.h... Preprocessing /casa/host/build/include/aims/utility/channel.h... Parsing file /casa/host/build/include/aims/utility/channel.h... Preprocessing /casa/host/build/include/aims/utility/converter_g.h... Parsing file /casa/host/build/include/aims/utility/converter_g.h... Preprocessing /casa/host/build/include/aims/utility/converter_bucket.h... Parsing file /casa/host/build/include/aims/utility/converter_bucket.h... Preprocessing /casa/host/build/include/aims/utility/converter_hsv.h... Parsing file /casa/host/build/include/aims/utility/converter_hsv.h... Prepr/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:44,781::INFO::Found '14' pipeline(s) in 'morphologist.capsul'. ocessing /casa/host/build/include/aims/utility/converter_rgb.h... Parsing file /casa/host/build/include/aims/utility/converter_rgb.h... Preprocessing /casa/host/build/include/aims/utility/converter_texture.h... Parsing file /casa/host/build/include/aims/utility/converter_texture.h... Preprocessing /casa/host/build/include/aims/utility/converter_volume.h... Parsing file /casa/host/build/include/aims/utility/converter_volume.h... Preprocessing /casa/host/build/include/aims/utility/clock.h... Parsing file /casa/host/build/include/aims/utility/clock.h... Preprocessing /casa/host/build/include/aims/utility/cyclic_iterator.h... Parsing file /casa/host/build/include/aims/utility/cyclic_iterator.h... Preprocessing /casa/host/build/include/aims/utility/flip.h... Parsing file /casa/host/build/include/aims/utility/flip.h... Preprocessing /casa/host/build/include/aims/utility/linearcomb.h... Parsing file /casa/host/build/include/aims/utility/linearcomb.h... Preprocessing /casa/host/build/include/aims/utility/masscenter.h... Parsing file /casa/host/build/include/aims/utility/masscenter.h... Preprocessing /casa/host/build/include/aims/utility/merge.h... Parsing file /casa/host/build/include/aims/utility/merge.h... Preprocessing /casa/host/build/include/aims/utility/minmax.h... Parsing file /casa/host/build/include/aims/utility/minmax.h... Preprocessing /casa/host/build/include/aims/utility/progress.h... Parsing file /casa/host/build/include/aims/utility/progress.h... Preprocessing /casa/host/build/include/aims/utility/stl_conversion.h... Parsing file /casa/host/build/include/aims/utility/stl_conversion.h... Preprocessing /casa/host/build/include/aims/utility/threshold.h... Parsing file /casa/host/build/include/aims/utility/threshold.h... Preprocessing /casa/host/build/include/aims/utility/utility_g.h... Parsing file /casa/host/build/include/aims/utility/utility_g.h... Preprocessing /casa/host/build/include/aims/vector/vector.h... Parsing file /casa/host/build/include/aims/vector/vector.h... Preprocessing /casa/host/build/include/aims/io/ecatformat.h... Parsing file /casa/host/build/include/aims/io/ecatformat.h... Preprocessing /casa/host/build/include/aims/io/ecatformat_d.h... Parsing file /casa/host/build/include/aims/io/ecatformat_d.h... Preprocessing /casa/host/build/include/aims/io/ecatheader.h... Parsing file /casa/host/build/include/aims/io/ecatheader.h... Preprocessing /casa/host/build/include/aims/io/ecatR.h... Parsing file /casa/host/build/include/aims/io/ecatR.h... Preprocessing /casa/host/build/include/aims/io/ecatSinoheader.h... Parsing file /casa/host/build/include/aims/io/ecatSinoheader.h... Preprocessing /casa/host/build/include/aims/io/ecatSinoR.h... Parsing file /casa/host/build/include/aims/io/ecatSinoR.h... Preprocessing /casa/host/build/include/aims/io/ecatSinoW.h... Parsing file /casa/host/build/include/aims/io/ecatSinoW.h... Preprocessing /casa/host/build/include/aims/io/ecatW.h... Parsing file /casa/host/build/include/aims/io/ecatW.h... Preprocessing /casa/host/build/include/aims/io/ecatfinderformat.h... Parsing file /casa/host/build/include/aims/io/ecatfinderformat.h... Preprocessing /casa/host/build/include/aims/plugin/ecatplugin.h... Parsing file /casa/host/build/include/aims/plugin/ecatplugin.h... Preprocessing /casa/host/build/include/aims/sino/sino.h... Parsing file /casa/host/build/include/aims/sino/sino.h... Preprocessing /casa/host/build/include/aims/sino/sino_d.h... Parsing file /casa/host/build/include/aims/sino/sino_d.h... Preprocessing /casa/host/build/include/aims/io/vidafinderformat.h... Parsing file /casa/host/build/include/aims/io/vidafinderformat.h... Preprocessing /casa/host/build/include/aims/io/vidaformat.h... Parsing file /casa/host/build/include/aims/io/vidaformat.h... Preprocessing /casa/host/build/include/aims/io/vidaformat_d.h... Parsing file /casa/host/build/include/aims/io/vidaformat_d.h... Preprocessing /casa/host/build/include/aims/io/vidaheader.h... Parsing file /casa/host/build/include/aims/io/vidaheader.h... Preprocessing /casa/host/build/include/aims/io/vidaR.h... Parsing file /casa/host/build/include/aims/io/vidaR.h... Preprocessing /casa/host/build/include/aims/io/vidaW.h... Parsing file /casa/host/build/include/aims/io/vidaW.h... Preprocessing /casa/host/build/include/aims/plugin/vidaplugin.h... Parsing file /casa/host/build/include/aims/plugin/vidaplugin.h... Preprocessing /casa/host/build/include/aims/io/plyformat.h... Parsing file /casa/host/build/include/aims/io/plyformat.h... Preprocessing /casa/host/build/include/aims/io/plyformat_d.h... Parsing file /casa/host/build/include/aims/io/plyformat_d.h... Preprocessing /casa/host/build/include/aims/io/plyheader.h... Parsing file /casa/host/build/include/aims/io/plyheader.h... Preprocessing /casa/host/build/include/aims/io/plyr.h... Parsing file /casa/host/build/include/aims/io/plyr.h... Preprocessing /casa/host/build/include/aims/io/plyw.h... Parsing file /casa/host/build/include/aims/io/plyw.h... Preprocessing /casa/host/build/include/aims/io/plyfinderformat.h... Parsing file /casa/host/build/include/aims/io/plyfinderformat.h... Preprocessing /casa/host/build/include/aims/plugin/plyplugin.h... Parsing file /casa/host/build/include/aims/plugin/plyplugin.h... Preprocessing /casa/host/build/include/aims/rply/rply.h... Parsing file /casa/host/build/include/aims/rply/rply.h... Preprocessing /casa/host/build/include/aims/io/fdfformat.h... Parsing file /casa/host/build/include/aims/io/fdfformat.h... Preprocessing /casa/host/build/include/aims/io/fdfformat_d.h... Parsing file /casa/host/build/include/aims/io/fdfformat_d.h... Preprocessing /casa/host/build/include/aims/io/fdfheader.h... Parsing file /casa/host/build/include/aims/io/fdfheader.h... Preprocessing /casa/host/build/include/aims/io/fdfR.h... Parsing file /casa/host/build/include/aims/io/fdfR.h... Preprocessing /casa/host/build/include/aims/io/fdffinderformat.h... Parsing file /casa/host/build/include/aims/io/fdffinderformat.h... Preprocessing /casa/host/build/include/aims/io/fdfprocpar.h... Parsing file /casa/host/build/include/aims/io/fdfprocpar.h... Preprocessing /casa/host/build/include/aims/io/fdfprocpar_g.h... Parsing file /casa/host/build/include/aims/io/fdfprocpar_g.h... Preprocessing /casa/host/build/include/aims/io/fdfutil.h... Parsing file /casa/host/build/include/aims/io/fdfutil.h... Preprocessing /casa/host/build/include/aims/plugin/fdfplugin.h... Parsing file /casa/host/build/include/aims/plugin/fdfplugin.h... Preprocessing /casa/host/build/include/aims/io/jpegformat.h... Parsing file /casa/host/build/include/aims/io/jpegformat.h... Preprocessing /casa/host/build/include/aims/io/jpegformat_d.h... Parsing file /casa/host/build/include/aims/io/jpegformat_d.h... Preprocessing /casa/host/build/include/aims/io/jpegheader.h... Parsing file /casa/host/build/include/aims/io/jpegheader.h... Preprocessing /casa/host/build/include/aims/io/jpegR.h... Parsing file /casa/host/build/include/aims/io/jpegR.h... Preprocessing /casa/host/build/include/aims/io/jpegW.h... Parsing file /casa/host/build/include/aims/io/jpegW.h... Preprocessing /casa/host/build/include/aims/io/jpegfinderformat.h... Parsing file /casa/host/build/include/aims/io/jpegfinderformat.h... Preprocessing /casa/host/build/include/aims/plugin/jpegplugin.h... Parsing file /casa/host/build/include/aims/plugin/jpegplugin.h... Preprocessing /casa/host/build/include/aims/io/tiffformat.h... Parsing file /casa/host/build/include/aims/io/tiffformat.h... Preprocessing /casa/host/build/include/aims/io/tiffformat_d.h... Parsing file /casa/host/build/include/aims/io/tiffformat_d.h... Preprocessing /casa/host/build/include/aims/io/tiffheader.h... Parsing file /casa/host/build/include/aims/io/tiffheader.h... Preprocessing /casa/host/build/include/aims/io/tiffR.h... Parsing file /casa/host/build/include/aims/io/tiffR.h... Preprocessing /casa/host/build/include/aims/io/tiffW.h... Parsing file /casa/host/build/include/aims/io/tiffW.h... Preprocessing /casa/host/build/include/aims/io/tifffinderformat.h... Parsing file /casa/host/build/include/aims/io/tifffinderformat.h... Preprocessing /casa/host/build/include/aims/plugin/tiffplugin.h... Parsin/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:44,817::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'. /casa/host/build/include/aims/utility/anytype_reader_details.h:36: warning: the name 'Belongs' supplied as the argument in the \file statement is not an input file /casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag:1: warning: Internal inconsistency: scope for class carto::conversion::Helper::yes not found! /casa/host/build/include/aims/data/cartodatavolume.h:60: warning: the name 'more' supplied as the argument of the \class, \struct, \union, or \include command is not an input file /casa/host/build/include/aims/data/cartodatavolume.h:62: warning: the name 'classes' supplied as the argument of the \class, \struct, \union, or \include command is not an input file /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:44,857::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:44,904::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'. [ 44%] Built target aimsdata /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:44,989::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'. [ 44%] Built target DiscoFFDMetrics config file : /casa/home/.anatomist/config/settings.cfg /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:45,023::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'. qt backend: PyQt5 building [mo]: targets for 0 po files that are out of date writing output... [ 44%] Built target AimsAverage building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../../share/doc/morphologist-ui-5.2/dev_doc. [ 44%] Built target AimsChannelExtract /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:45,063::INFO::Pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM.png'. /casa/host/build/include/aims/border/borderiterator.h:290: warning: no uniquely matching class member found for template < T > aims::BorderIterator< T >::const_iterator::const_iterator(const typename aims::BorderIterator< T >::aims::BorderIterator::const_iterator &other) Possible candidates: 'aims::BorderIterator< T >::const_iterator::const_iterator()' at line 132 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::const_iterator::const_iterator(const const_iterator &other)' at line 134 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::const_iterator::const_iterator(const iterator &other)' at line 136 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::const_iterator::const_iterator(BorderIterator< T > &b, bool end=false)' at line 140 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::const_iterator::const_iterator(BorderIterator< T > &b, const Point4dl &current)' at line 142 of file /casa/host/build/include/aims/border/borderiterator.h /casa/host/build/include/aims/border/borderiterator.h:297: warning: no uniquely matching class member found for template < T > aims::BorderIterator< T >::const_iterator::const_iterator(const typename aims::BorderIterator< T >::aims::BorderIterator::iterator &other) Possible candidates: 'aims::BorderIterator< T >::const_iterator::const_iterator()' at line 132 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::const_iterator::const_iterator(const const_iterator &other)' at line 134 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::const_iterator::const_iterator(const iterator &other)' at line 136 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::const_iterator::const_iterator(BorderIterator< T > &b, bool end=false)' at line 140 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::const_iterator::const_iterator(BorderIterator< T > &b, const Point4dl &current)' at line 142 of file /casa/host/build/include/aims/border/borderiterator.h /casa/host/build/include/aims/border/borderiterator.h:304: warning: no uniquely matching class member found for template < T > BorderIterator< T >::const_iterator & aims::BorderIterator< T >::const_iterator::operator=(const typename aims::BorderIterator< T >::aims::BorderIterator::const_iterator &other) Possible candidates: 'const_iterator & aims::BorderIterator< T >::const_iterator::operator=(const const_iterator &other)' at line 147 of file /casa/host/build/include/aims/border/borderiterator.h 'const_iterator & aims::BorderIterator< T >::const_iterator::operator=(const iterator &other)' at line 149 of file /casa/host/build/include/aims/border/borderiterator.h /casa/host/build/include/aims/border/borderiterator.h:313: warning: no uniquely matching class member found for template < T > BorderIterator< T >::const_iterator & aims::BorderIterator< T >::const_iterator::operator=(const typename aims::BorderIterator< T >::aims::BorderIterator::iterator &other) Possible candidates: 'const_iterator & aims::BorderIterator< T >::const_iterator::operator=(const const_iterator &other)' at line 147 of file /casa/host/build/include/aims/border/borderiterator.h 'const_iterator & aims::BorderIterator< T >::const_iterator::operator=(const iterator &other)' at line 149 of file /casa/host/build/include/aims/border/borderiterator.h /casa/host/build/include/aims/border/borderiterator.h:552: warning: no uniquely matching class member found for template < T > aims::BorderIterator< T >::iterator::iterator(const typename aims::BorderIterator< T >::aims::BorderIterator::iterator &other) Possible candidates: 'aims::BorderIterator< T >::iterator::iterator()' at line 213 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::iterator::iterator(const iterator &other)' at line 215 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::iterator::iterator(BorderIterator< T > &b, bool end=false)' at line 219 of file /casa/host/build/include/aims/border/borderiterator.h 'aims::BorderIterator< T >::iterator::iterator(BorderIterator< T > &b, const Point4dl &current)' at line 221 of file /casa/host/build/include/aims/border/borderiterator.h /casa/host/build/include/aims/connectivity/structuring_element.h:94: warning: no uniquely matching class member found for iterator over Point3dl of the aims::StructuringElement::aims::StructuringElement /casa/host/build/include/aims/connectivity/structuring_element.h:96: warning: documented symbol 'const_iterator over Point3dl of aims::StructuringElement::the' was not declared or defined. /casa/host/build/include/aims/connectivity/structuring_element.h:381: warning: documented symbol 'bool matrix x3x3 elements that describe a aims::strel::Connectivity::D' was not declared or defined. /casa/host/build/include/aims/data/cartodatavolume.h:761: warning: no uniquely matching class member found for template < T > AimsData< T >::reference AimsData< T >::operator[](AimsData< T >::size_t n) Possible candidates: 'reference AimsData< T >::operator[](size_type n)' at line 145 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator[](size_type n) const' at line 146 of file /casa/host/build/include/aims/data/cartodatavolume.h /casa/host/build/include/aims/data/cartodatavolume.h:770: warning: no uniquely matching class member found for template < T > AimsData< T >::const_reference AimsData< T >::operator[](AimsData< T >::size_t n) const Possible candidates: 'reference AimsData< T >::operator[](size_type n)' at line 145 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator[](size_type n) const' at line 146 of file /casa/host/build/include/aims/data/cartodatavolume.h /casa/host/build/include/aims/data/cartodatavolume.h:779: warning: no uniquely matching class member found for template < T > AimsData< T >::reference AimsData< T >::operator()(AimsData< T >::size_t x, AimsData< T >::size_type y, AimsData< T >::size_type z, AimsData< T >::size_type t) Possible candidates: 'reference AimsData< T >::operator()(size_type x=0, size_type y=0, size_type z=0, size_type t=0)' at line 147 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(size_type x=0, size_type y=0, size_type z=0, size_type t=0) const' at line 149 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point4d &pt)' at line 151 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point4d &pt) const' at line 152 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point4dl &pt)' at line 153 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point4dl &pt) const' at line 154 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point3d &pt)' at line 155 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point3d &pt) const' at line 156 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point3dl &pt)' at line 157 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point3dl &pt) const' at line 158 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point2d &pt)' at line 159 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point2d &pt) const' at line 160 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point2dl &pt)' at line 161 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point2dl &pt) const' at line 162 of file /casa/host/build/include/aims/data/cartodatavolume.h /casa/host/build/include/aims/data/cartodatavolume.h:789: warning: no uniquely matching class member found for template < T > AimsData< T >::const_reference AimsData< T >::operator()(AimsData< T >::size_t x, AimsData< T >::size_type y, AimsData< T >::size_type z, AimsData< T >::size_type t) const Possible candidates: 'reference AimsData< T >::operator()(size_type x=0, size_type y=0, size_type z=0, size_type t=0)' at line 147 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(size_type x=0, size_type y=0, size_type z=0, size_type t=0) const' at line 149 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point4d &pt)' at line 151 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point4d &pt) const' at line 152 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point4dl &pt)' at line 153 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point4dl &pt) const' at line 154 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point3d &pt)' at line 155 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point3d &pt) const' at line 156 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point3dl &pt)' at line 157 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point3dl &pt) const' at line 158 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point2d &pt)' at line 159 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point2d &pt) const' at line 160 of file /casa/host/build/include/aims/data/cartodatavolume.h 'reference AimsData< T >::operator()(const Point2dl &pt)' at line 161 of file /casa/host/build/include/aims/data/cartodatavolume.h 'const_reference AimsData< T >::operator()(const Point2dl &pt) const' at line 162 of file /casa/host/build/include/aims/data/cartodatavolume.h /casa/host/build/include/aims/data/fastAllocationData.h:111: warning: no uniquely matching class member found for template < T > const carto::AllocatorContext AimsFastAllocationData< T >::fastAllocatorContext & aims::carto::MemoryAllocator::singleton() /casa/host/build/include/aims/data/pheader.h:101: warning: no uniquely matching class member found for template Object carto::Object::value(const aims::PythonHeader &v) Possible candidates: 'Object carto::Object::value(const Object &value)' at line 1 of file /casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag 'static Object carto::Object::value()' at line 1 of file /casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag 'static Object carto::Object::value(const T &)' at line 1 of file /casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag [ 44%] Built target AimsComposeTransformation /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:45,097::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'. /casa/host/build/include/aims/utility/channel.h:122: warning: no uniquely matching class member found for template < T, U, C > U ChannelSelector::select(const T &input, const uint8_t) /casa/host/build/include/aims/utility/channel.h:128: warning: no uniquely matching class member found for template < T, U, C > void ChannelSelector::set(T &input, const uint8_t, const U &value) /casa/host/build/include/aims/utility/channel.h:134: warning: no uniquely matching class member found for template < U > U ChannelSelector::select(const AimsRGB &input, const uint8_t channel) /casa/host/build/include/aims/utility/channel.h:155: warning: no uniquely matching class member found for template < U > void ChannelSelector::set(AimsRGB &input, const uint8_t channel, const U &value) /casa/host/build/include/aims/utility/channel.h:171: warning: no uniquely matching class member found for template < U > U ChannelSelector::select(const AimsRGBA &input, const uint8_t channel) /casa/host/build/include/aims/utility/channel.h:196: warning: no uniquely matching class member found for template < U > void ChannelSelector::set(AimsRGBA &input, const uint8_t channel, const U &value) /casa/host/build/include/aims/utility/channel.h:215: warning: no uniquely matching class member found for template < U > U ChannelSelector::select(const AimsHSV &input, const uint8_t channel) /casa/host/build/include/aims/utility/channel.h:239: warning: no uniquely matching class member found for template < U > void ChannelSelector::set(AimsHSV &input, const uint8_t channel, const U &value) /casa/host/build/include/aims/utility/converter_bucket.h:264: warning: no uniquely matching class member found for template < INP, OUTP > void carto::RawConverter< INP, OUTP >::printToVolume(const aims::BucketMap< INP > &in, carto::rc_ptr< Volume< OUTP > > &out, const Point3d &offset) const /casa/host/build/include/aims/utility/converter_bucket.h:384: warning: no uniquely matching class member found for template < OUTP > void carto::RawConverter< OUTP >::printToVolume(const aims::BucketMap< Void > &in, carto::rc_ptr< Volume< OUTP > > &out, const Point3d &offset) const [ 44%] Built target AimsConnectComp This plugin does not support propagateSizeHints() Consolidate compiler generated dependencies of target aimsalgo [ 44%] Built target AimsFiberOversampler /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:45,155::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'. done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/aimsdata-5.2/dev_doc/objects.inv... loading intersphinx inventory from https://docs.python.org/3.10/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... [ 44%] Built target AimsFileConvert [ 44%] Built target AimsFileInfo [ 48%] Built target aimsalgo [ 48%] Built target AimsFlip [ 48%] Built target AimsGraphComplete [ 48%] Built target AimsGraphConvert [ 48%] Built target AimsGraphExtractTransformation [ 48%] Built target AimsGraphMerge [ 48%] Built target morphologist-ui-sphinx [ 48%] Built target AimsInvertTransformation /casa/host/build/include/aims/io/process.h:215: warning: Found unknown command '\process' /casa/host/build/include/aims/mesh/surfacemanip.h:167: warning: Unsupported xml/html tag <region> found /casa/host/build/include/aims/mesh/surfacemanip.h:175: warning: Unsupported xml/html tag <region> found [ 48%] Built target AimsMassCenter [ 48%] Built target AimsMerge2Rgb [ 48%] Built target AimsMergeLabel /casa/host/build/include/aims/io/process.h:256: warning: included file AimsFileInfo/fileInfo.cc is not found. Check your EXAMPLE_PATH [ 48%] Built target AimsMeshCut [ 48%] Built target AimsMeshArea [ 48%] Built target AimsMeshes2Graph [ 52%] Built target AimsMeshGenerate [ 52%] Built target AimsMeshTransform [ 52%] Built target AimsOverVolume g file /casa/host/build/include/aims/plugin/tiffplugin.h... Preprocessing /casa/host/build/include/aims/io/gifti.h... Parsing file /casa/host/build/include/aims/io/gifti.h... Preprocessing /casa/host/build/include/aims/io/giftiformat.h... Parsing file /casa/host/build/include/aims/io/giftiformat.h... Preprocessing /casa/host/build/include/aims/io/giftimeshformat_d.h... Parsing file /casa/host/build/include/aims/io/giftimeshformat_d.h... Preprocessing /casa/host/build/include/aims/io/giftitextureformat_d.h... Parsing file /casa/host/build/include/aims/io/giftitextureformat_d.h... Preprocessing /casa/host/build/include/aims/io/giftiheader.h... Parsing file /casa/host/build/include/aims/io/giftiheader.h... Preprocessing /casa/host/build/include/aims/io/giftifinderformat.h... Parsing file /casa/host/build/include/aims/io/giftifinderformat.h... Preprocessing /casa/host/build/include/aims/io/giftiutil.h... Parsing file /casa/host/build/include/aims/io/giftiutil.h... Preprocessing /casa/host/build/include/aims/plugin/giftiplugin.h... Parsing file /casa/host/build/include/aims/plugin/giftiplugin.h... Preprocessing /casa/host/build/include/aims/config/config.h... Parsing file /casa/host/build/include/aims/config/config.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating docs for example AimsFileInfo/fileInfo.cc... Generating file sources... Generating code for file aims/border/borderfiller.h... Generating code for file aims/border/borderiterator.h... Generating code for file aims/bucket/bucket.h... Generating code for file aims/bucket/bucket_g.h... Generating code for file aims/bucket/bucketgen.h... Generating code for file aims/bucket/bucketMap.h... Generating code for file aims/bucket/bucketutil.h... Generating code for file aims/bucket/bucketutil_d.h... Generating code for file aims/bucket/item.h... Generating code for file aims/bucket/sparsevolume.h... Generating code for file aims/color/colormap.h... Generating code for file aims/config/aimsdata_config.h... Generating code for file aims/config/config.h... Generating code for file aims/connectivity/component.h... Generating code for file aims/connectivity/component_d.h... Generating code for file aims/connectivity/connectivity.h... Generating code for file aims/connectivity/connectivity_g.h... Generating code for file aims/connectivity/structuring_eleme[ 52%] Built target AimsRoiFeatures [ 52%] Built target AimsRemoveNaN [ 52%] Built target AimsSelectLabel [ 52%] Built target AimsSplitRgb [ 52%] Built target AimsSetMinf [ 52%] Built target AimsSubVolume [ 52%] Built target AimsSumSparseMatrix [ 52%] Built target AimsTCat [ 52%] Built target AimsTex2Graph [ 52%] Built target AimsTex2Vol [ 52%] Built target AimsThreshold [ 52%] Built target AimsVectorFieldToMesh [ 52%] Built target AimsVolumeExtract [ 52%] Built target aimstiff nt.h... Generating code for file aims/curve/curve.h... Generating code for file aims/data/cartodatavolume.h... Generating code for file aims/data/data.h... Generating code for file aims/data/data_g.h... Generating code for file aims/data/fastAllocationData.h... Generating code for file aims/data/header.h... Generating code for file aims/data/headerutil.h... Generating code for file aims/data/pheader.h... Generating code for file aims/data/pheader_doc.h... Generating code for file aims/data/sliceformatheader.h... Generating code for file aims/data/volumemanip.h... Generating code for file aims/data/volumeoperators_aims.h... Generating code for file aims/def/assert.h... Generating code for file aims/def/def_g.h... Generating code for file aims/def/general.h... Generating code for file aims/def/info.h... Generating code for file aims/def/path.h... Generating code for file aims/def/settings.h... Generating code for file aims/doc/aimsdata_doc.h... Generating code for file aims/features/features.h... Generating code for file aims/features/point_set_features.h... Generating code for file aims/features/roi_features.h... Generating code for file aims/features/scalar_set_features.h... Generating code for file aims/fibers/bundleRegroup.h... Generating code for file aims/fibers/bundles.h... Generating code for file aims/fibers/bundles_features.h... Generating code for file aims/fibers/bundleSampler.h... Generating code for file aims/fibers/bundlesFusion.h... Generating code for file aims/fibers/bundlesSlicer.h... Generating code for file aims/fibers/fiberOversampler.h... Generating code for file aims/fibers/mrtrixbundlereader.h... Generating code for file aims/fibers/trackvisbundlereader.h... Generating code for file aims/getopt/getopt2.h... Generating code for file aims/getopt/getoptProcess.h... Generating code for file aims/graph/graphmanip.h... Generating code for file aims/graph/graphmanip_d.h... Generating code for file aims/hsv/hsv.h... Generating code for file aims/io/aimsGraphR.h... Generating code for file aims/io/aimsGraphR_d.h... Generating code for file aims/io/aimsGraphW.h... Generating code for file aims/io/aimsGraphW_d.h... Generating code for file aims/io/apcreader.h... Generating code for file aims/io/argheader.h... Generating code for file aims/io/argR.h... Generating code for file aims/io/argW.h... Generating code for file aims/io/baseFormats_bucket.h... Generating code for file aims/io/baseFormats_bucket_d.h... Generating code for file aims/io/baseFormats_cartovolume.h... Generating code for file aims/io/baseFormats_genericobject.h... Generating code for file aims/io/baseFormats_graph.h... Generating code for file aims/io/baseFormats_hierarchy.h... Generating code for file aims/io/baseFormats_mesh.h... Generating code for file aims/io/baseFormats_mesh_d.h... Generating code for file aims/io/baseFormats_sparsematrix.h... Generating code for file aims/io/baseFormats_syntax.h... Generating code for file aims/io/baseFormats_texture.h... Generating code for file aims/io/baseFormats_texture_d.h... Generating code for file aims/io/baseFormats_volume.h... Generating code for file aims/io/baseFormats_volume_d.h... Generating code for file aims/io/bckheader.h... Generating code for file aims/io/bckItemR.h... Generating code for file aims/io/bckItemW.h... Generating code for file aims/io/bckMapR.h... Generating code for file aims/io/bckMapW.h... Generating code for file aims/io/bckR.h... Generating code for file aims/io/bckW.h... Generating code for file aims/io/byteswap.h... Generating code for file aims/io/channelR.h... Generating code for file aims/io/cmapR.h... Generating code for file aims/io/cmapW.h... Generating code for file aims/io/coarseR.h... Generating code for file aims/io/datatypecode.h... Generating code for file aims/io/dbh.h... Generating code for file aims/io/defaultItemR.h... Generating code for file aims/io/defaultItemW.h... Generating code for file aims/io/directory.h... Generating code for file aims/io/dtitensorItemR.h... Generating code for file aims/io/dtitensorItemW.h... Generating code for file aim[ 52%] Built target AimsBundle2Vol [ 52%] Built target AimsBundleAnalysis [ 52%] Built target Aims3DPointCloud [ 52%] Built target AimsActivPixel2Volume [ 52%] Built target AimsAddNoise2Data [ 52%] Built target AimsApplyTransform Process2 execution, a: 0.000000, b: blop [ 52%] Built target AimsApplyVectorField [ 52%] Built target AimsBuildDti [ 52%] Built target AimsBuildIndex [ 52%] Built target AimsBvalue [ 52%] Built target AimsChamferDistanceMap [ 52%] Built target AimsClusterArg Process2 execution, a: 0.000000, b: yup [ 52%] Built target AimsConvexHull s/io/ecatfinderformat.h... Generating code for file aims/io/ecatformat.h... Generating code for file aims/io/ecatformat_d.h... Generating code for file aims/io/ecatheader.h... Generating code for file aims/io/ecatR.h... Generating code for file aims/io/ecatSinoheader.h... Generating code for file aims/io/ecatSinoR.h... Generating code for file aims/io/ecatSinoW.h... Generating code for file aims/io/ecatW.h... Generating code for file aims/io/fdffinderformat.h... Generating code for file aims/io/fdfformat.h... Generating code for file aims/io/fdfformat_d.h... Generating code for file aims/io/fdfheader.h... Generating code for file aims/io/fdfprocpar.h... Generating code for file aims/io/fdfprocpar_g.h... Generating code for file aims/io/fdfR.h... Generating code for file aims/io/fdfutil.h... Generating code for file aims/io/fileFormat.h... Generating code for file aims/io/fileFormat_cartovolume_d.h... Generating code for file aims/io/fileFormat_d.h... Generating code for file aims/io/finder.h... Generating code for file aims/io/finderFormats.h... Generating code for file aims/io/ge_imageFileOffsets.h... Generating code for file aims/io/ge_imghdr.h... Generating code for file aims/io/genesisheader.h... Generating code for file aims/io/genesisR.h... Generating code for file aims/io/gifti.h... Generating code for file aims/io/giftifinderformat.h... Generating code for file aims/io/giftiformat.h... Generating code for file aims/io/giftiheader.h... Generating code for file aims/io/giftimeshformat_d.h... Generating code for file aims/io/giftitextureformat_d.h... Generating code for file aims/io/giftiutil.h... Generating code for file aims/io/graphBundlesFormat.h... Generating code for file aims/io/hieR.h... Generating code for file aims/io/imasparseheader.h... Generating code for file aims/io/io_g.h... Generating code for file aims/io/iooptions.h... Generating code for file aims/io/itemR.h... Generating code for file aims/io/itemR_stl.h... Generating code for file aims/io/itemW.h... Generating code for file aims/io/itemW_stl.h... Generating code for file aims/io/jpegfinderformat.h... Generating code for file aims/io/jpegformat.h... Generating code for file aims/io/jpegformat_d.h... Generating code for file aims/io/jpegheader.h... Generating code for file aims/io/jpegR.h... Generating code for file aims/io/jpegW.h... Generating code for file aims/io/labelImage.h... Generating code for file aims/io/listItemR.h... Generating code for file aims/io/listItemW.h... Generating code for file aims/io/macosxbugs.h... Generating code for file aims/io/meshheader.h... Generating code for file aims/io/meshR.h... Generating code for file aims/io/meshW.h... Generating code for file aims/io/mniobjheader.h... Generating code for file aims/io/plyfinderformat.h... Generating code for file aims/io/plyformat.h... Generating code for file aims/io/plyformat_d.h... Generating code for file aims/io/plyheader.h... Generating code for file aims/io/plyr.h... Generating code for file aims/io/plyw.h... Generating code for file aims/io/povW.h... Generating code for file aims/io/process.h... Generating code for file aims/io/reader.h... Generating code for file aims/io/reader_d.h... Generating code for file aims/io/readerasobject.h... Generating code for file aims/io/roiR.h... Generating code for file aims/io/scaledcoding.h... Generating code for file aims/io/selectionr.h... Generating code for file aims/io/selectionw.h... Generating code for file aims/io/spmattribconverter.h... Generating code for file aims/io/spmheader.h... Generating code for file aims/io/spmR.h... Generating code for file aims/io/spmR_d.h... Generating code for file aims/io/spmW.h... Generating code for file aims/io/spmW_d.h... Generating code for file aims/io/tensorItemR.h... Generating code for file aims/io/tensorItemW.h... Generating code for file aims/io/texheader.h... Generating code for file aims/io/texR.h... Generating code for file aims/io/texW.h... Generating code for file aims/io/tifffinderformat.h... Generating code for file aims/io/tiffformat.h... Generating code for file aims/io[ 52%] Built target AimsT2BasedCorrectionEpi [ 52%] Built target AimsCorrectionEpi [ 52%] Built target AimsCreateTexture [ 52%] Built target AimsCurvature2d [ 52%] Built target AimsCurvature3d [ 52%] Built target AimsCylinder [ 52%] Built target AimsDanielssonDist [ 52%] Built target AimsCompareSPMtToPrimalSketch [ 52%] Built target AimsElevationMap [ 52%] Built target AimsFrontDistanceMap [ 52%] Built target AimsFoldArgAtt [ 52%] Built target AimsGaussianSmoothing [autosummary] generating autosummary for: index.rst, pyaims_aimsalgo.rst, pyaims_aimsalgo_examples.rst, pyaims_algo.rst, pyaims_api_aims.rst, pyaims_api_aimsalgo.rst, pyaims_examples.rst, pyaims_examples_advanced.rst, pyaims_highlevel.rst, pyaims_lowlevel.rst, pyaims_modules_api.rst, pyaims_tutorial.rst, pyaims_tutorial_nb.ipynb, volume_orientation.ipynb /tiffformat_d.h... Generating code for file aims/io/tiffheader.h... Generating code for file aims/io/tiffR.h... Generating code for file aims/io/tiffW.h... Generating code for file aims/io/triederItemR.h... Generating code for file aims/io/triederItemW.h... Generating code for file aims/io/triheader.h... Generating code for file aims/io/triR.h... Generating code for file aims/io/triW.h... Generating code for file aims/io/vidafinderformat.h... Generating code for file aims/io/vidaformat.h... Generating code for file aims/io/vidaformat_d.h... Generating code for file aims/io/vidaheader.h... Generating code for file aims/io/vidaR.h... Generating code for file aims/io/vidaW.h... Generating code for file aims/io/wavefrontheader.h... Generating code for file aims/io/wavefrontmeshR.h... Generating code for file aims/io/wavefrontmeshW.h... Generating code for file aims/io/writer.h... Generating code for file aims/io/writer_d.h... Generating code for file aims/io_soma/fsannotformatchecker.h... Generating code for file aims/io_soma/fsannotformatreader.h... Generating code for file aims/io_soma/fsannotformatreader_d.h... Generating code for file aims/io_soma/fscurvformatchecker.h... Generating code for file aims/io_soma/fscurvformatreader.h... Generating code for file aims/io_soma/fscurvformatreader_d.h... Generating code for file aims/io_soma/fssurfformatchecker.h... Generating code for file aims/io_soma/fssurfformatreader.h... Generating code for file aims/io_soma/fssurfformatreader_d.h... Generating code for file aims/io_soma/ltaformatchecker.h... Generating code for file aims/io_soma/ltaformatreader.h... Generating code for file aims/io_soma/trm_compose_formatchecker.h... Generating code for file aims/io_soma/trm_compose_formatreader.h... Generating code for file aims/io_soma/trm_header_formatchecker.h... Generating code for file aims/io_soma/trm_header_formatreader.h... Generating code for file aims/io_soma/trmformatchecker.h... Generating code for file aims/io_soma/trmformatreader.h... Generating code for file aims/io_soma/trmformatwriter.h... Generating code for file aims/io_soma/trmgraphformatchecker.h... Generating code for file aims/io_soma/trmgraphformatreader.h... Generating code for file aims/io_soma/trmgraphformatwriter.h... Generating code for file aims/io_soma/trmingraphformatchecker.h... Generating code for file aims/io_soma/trmingraphformatreader.h... Generating code for file aims/io_soma/xfmformatchecker.h... Generating code for file aims/io_soma/xfmformatreader.h... Generating code for file aims/io_soma/xfmformatwriter.h... Generating code for file aims/math/dtitensor.h... Generating code for file aims/math/gausslu.h... Generating code for file aims/math/integrator.h... Generating code for file aims/math/lagrange.h... Generating code for file aims/math/mathelem.h... Generating code for file aims/math/mathelemrgb.h... Generating code for file aims/math/romberg.h... Generating code for file aims/math/rombergitg.h... Generating code for file aims/math/tensor.h... Generating code for file aims/math/trapezeitg.h... Generating code for file aims/math/trieder.h... Generating code for file aims/memmap/allocator.h... Generating code for file aims/mesh/cutmesh.h... Generating code for file aims/mesh/cutmesh_d.h... Generating code for file aims/mesh/mesh_rasterization_d.h... Generating code for file aims/mesh/surface.h... Generating code for file aims/mesh/surface_g.h... Generating code for file aims/mesh/surfacegen.h... Generating code for file aims/mesh/surfacemanip.h... Generating code for file aims/mesh/surfacemanip_d.h... Generating code for file aims/mesh/surfaceOperation.h... Generating code for file aims/mesh/tex2graph.h... Generating code for file aims/mesh/tex2graph_d.h... Generating code for file aims/mesh/texture.h... Generating code for file aims/mesh/texturetools.h... Generating code for file aims/meshprojection/meshprojection.h... Generating code for file aims/meshprojection/meshprojection_d.h... Generating code for file aims/plugin/ecatplugin.h... Generating code for file aims/plugin/fdfplugin.h... Generati[ 52%] Built target AimsGraphMesh [ 52%] Built target AimsGaussianSmoothing1d [ 52%] Built target AimsGraphTransferLabels [ 52%] Built target AimsHippocampicReferential [ 52%] Built target AimsGTMDump [ 52%] Built target AimsIcmSpaghetti [ 52%] Built target AimsIcosaList [ 52%] Built target AimsIcmSpaghettiN [ 52%] Built target AimsImageGLBlobStats [ 52%] Built target AimsImagePrimalSketch [ 52%] Built target AimsImageScaleSpace [ 52%] Built target AimsImageSmoothing Consolidate compiler generated dependencies of target AimsInflate [ 52%] Built target AimsInflate [ 52%] Built target AimsParameterize2DImageDomain [ 52%] Built target AimsLightenAtlas [ 52%] Built target AimsMask warning: Included by graph for 'aimsdata_config.h' not generated, too many nodes (88), threshold is 50. Consider increasing DOT_GRAPH_MAX_NODES. [ 52%] Built target AimsMeanCurvFlow ng code for file aims/plugin/giftiplugin.h... Generating code for file aims/plugin/jpegplugin.h... Generating code for file aims/plugin/plyplugin.h... Generating code for file aims/plugin/tiffplugin.h... Generating code for file aims/plugin/vidaplugin.h... Generating code for file aims/resampling/linearInterpolator.h... Generating code for file aims/resampling/mask.h... Generating code for file aims/resampling/mask_d.h... Generating code for file aims/resampling/motion.h... Generating code for file aims/resampling/quaternion.h... Generating code for file aims/resampling/standardreferentials.h... Generating code for file aims/rgb/rgb.h... Generating code for file aims/rgb/rgbnorm.h... Generating code for file aims/roi/fill.h... Generating code for file aims/roi/fill_d.h... Generating code for file aims/roi/hie.h... Generating code for file aims/roi/maskIterator.h... Generating code for file aims/roi/roi.h... Generating code for file aims/roi/roi_diff.h... Generating code for file aims/roi/roi_g.h... Generating code for file aims/roi/roiIterator.h... Generating code for file aims/roi/voxelSampling.h... Generating code for file aims/rply/rply.h... Generating code for file aims/selection/selection.h... Generating code for file aims/selection/selector.h... Generating code for file aims/sino/sino.h... Generating code for file aims/sino/sino_d.h... Generating code for file aims/sparsematrix/ciftitools.h... Generating code for file aims/sparsematrix/sparseMatrix.h... Generating code for file aims/sparsematrix/sparseMatrixItemR.h... Generating code for file aims/sparsematrix/sparseMatrixItemW.h... Generating code for file aims/sparsematrix/sparsematrixutil.h... Generating code for file aims/sparsematrix/sparseordensematrix.h... Generating code for file aims/texdata/texdata.h... Generating code for file aims/transformation/affinetransformation3d.h... Generating code for file aims/transformation/transformation.h... Generating code for file aims/transformation/transformation_chain.h... Generating code for file aims/transformation/transformationgraph3d.h... Generating code for file aims/utility/anytype_reader.h... Generating code for file aims/utility/anytype_reader_details.h... Generating code for file aims/utility/bininverse.h... Generating code for file aims/utility/boundingbox.h... Generating code for file aims/utility/channel.h... Generating code for file aims/utility/clock.h... Generating code for file aims/utility/converter_bucket.h... Generating code for file aims/utility/converter_g.h... Generating code for file aims/utility/converter_hsv.h... Generating code for file aims/utility/converter_rgb.h... Generating code for file aims/utility/converter_texture.h... Generating code for file aims/utility/converter_volume.h... Generating code for file aims/utility/cyclic_iterator.h... Generating code for file aims/utility/flip.h... Generating code for file aims/utility/linearcomb.h... Generating code for file aims/utility/masscenter.h... Generating code for file aims/utility/merge.h... Generating code for file aims/utility/minmax.h... Generating code for file aims/utility/progress.h... Generating code for file aims/utility/stl_conversion.h... Generating code for file aims/utility/threshold.h... Generating code for file aims/utility/utility_g.h... Generating code for file aims/vector/vector.h... Generating file documentation... Generating docs for file aims/border/borderfiller.h... Generating docs for file aims/border/borderiterator.h... Generating docs for file aims/bucket/bucket.h... Generating docs for file aims/bucket/bucket_g.h... Generating docs for file aims/bucket/bucketgen.h... Generating docs for file aims/bucket/bucketMap.h... Generating docs for file aims/bucket/bucketutil.h... Generating docs for file aims/bucket/bucketutil_d.h... Generating docs for file aims/bucket/item.h... Generating docs for file aims/bucket/sparsevolume.h... Generating docs for file aims/color/colormap.h... Generating docs for file aims/config/aimsdata_config.h... Generating docs for file aims/config/config.h... Generating docs for file aims/connect[ 52%] Built target AimsMedianSmoothing [ 52%] Built target AimsSmoothing [ 52%] Built target AimsMerge [ 52%] Built target AimsMesh [ 52%] Built target AimsMesh2Ascii [ 52%] Built target AimsMesh2SSGraph ivity/component.h... Generating docs for file aims/connectivity/component_d.h... Generating docs for file aims/connectivity/connectivity.h... Generating docs for file aims/connectivity/connectivity_g.h... Generating docs for file aims/connectivity/structuring_element.h... Generating docs for file aims/curve/curve.h... Generating docs for file aims/data/cartodatavolume.h... Generating docs for file aims/data/data.h... Generating docs for file aims/data/data_g.h... Generating docs for file aims/data/fastAllocationData.h... Generating docs for file aims/data/header.h... Generating docs for file aims/data/headerutil.h... Generating docs for file aims/data/pheader.h... Generating docs for file aims/data/pheader_doc.h... Generating docs for file aims/data/sliceformatheader.h... Generating docs for file aims/data/volumemanip.h... Generating docs for file aims/data/volumeoperators_aims.h... Generating docs for file aims/def/assert.h... Generating docs for file aims/def/def_g.h... Generating docs for file aims/def/general.h... Generating docs for file aims/def/info.h... Generating docs for file aims/def/path.h... Generating docs for file aims/def/settings.h... Generating docs for file aims/doc/aimsdata_doc.h... Generating docs for file aims/features/features.h... Generating docs for file aims/features/point_set_features.h... Generating docs for file aims/features/roi_features.h... Generating docs for file aims/features/scalar_set_features.h... Generating docs for file aims/fibers/bundleRegroup.h... Generating docs for file aims/fibers/bundles.h... Generating docs for file aims/fibers/bundles_features.h... Generating docs for file aims/fibers/bundleSampler.h... Generating docs for file aims/fibers/bundlesFusion.h... Generating docs for file aims/fibers/bundlesSlicer.h... Generating docs for file aims/fibers/fiberOversampler.h... Generating docs for file aims/fibers/mrtrixbundlereader.h... Generating docs for file aims/fibers/trackvisbundlereader.h... Generating docs for file aims/getopt/getopt2.h... Generating docs for file aims/getopt/getoptProcess.h... Generating docs for file aims/graph/graphmanip.h... Generating docs for file aims/graph/graphmanip_d.h... Generating docs for file aims/hsv/hsv.h... Generating docs for file aims/io/aimsGraphR.h... Generating docs for file aims/io/aimsGraphR_d.h... Generating docs for file aims/io/aimsGraphW.h... Generating docs for file aims/io/aimsGraphW_d.h... Generating docs for file aims/io/apcreader.h... Generating docs for file aims/io/argheader.h... Generating docs for file aims/io/argR.h... Generating docs for file aims/io/argW.h... Generating docs for file aims/io/baseFormats_bucket.h... Generating docs for file aims/io/baseFormats_bucket_d.h... Generating docs for file aims/io/baseFormats_cartovolume.h... Generating docs for file aims/io/baseFormats_genericobject.h... Generating docs for file aims/io/baseFormats_graph.h... Generating docs for file aims/io/baseFormats_hierarchy.h... Generating docs for file aims/io/baseFormats_mesh.h... Generating docs for file aims/io/baseFormats_mesh_d.h... Generating docs for file aims/io/baseFormats_sparsematrix.h... Generating docs for file aims/io/baseFormats_syntax.h... Generating docs for file aims/io/baseFormats_texture.h... Generating docs for file aims/io/baseFormats_texture_d.h... Generating docs for file aims/io/baseFormats_volume.h... Generating docs for file aims/io/baseFormats_volume_d.h... Generating docs for file aims/io/bckheader.h... Generating docs for file aims/io/bckItemR.h... Generating docs for file aims/io/bckItemW.h... Generating docs for file aims/io/bckMapR.h... Generating docs for file aims/io/bckMapW.h... Generating docs for file aims/io/bckR.h... Generating docs for file aims/io/bckW.h... Generating docs for file aims/io/byteswap.h... Generating docs for file aims/io/channelR.h... Generating docs for file aims/io/cmapR.h... Generating docs for file aims/io/cmapW.h... Generating docs for file aims/io/coarseR.h... Generating docs for file aims/io/datatypecode.h... Generating docs for file aims/io/dbh.h... Generating docs forbuilding [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: [ 52%] Built target AimsMesh2Sphere 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded, 1 warning. The HTML pages are in ../../../../share/doc/pyaims-5.2/sphinx. [ 52%] Built target AimsMeshAverage [ 52%] Built target AimsMeshBlobExtract [ 52%] Built target AimsMeshBrain [ 52%] Built target AimsMeshCC2Arg Consolidate compiler generated dependencies of target AimsMeshCleaner [ 52%] Built target AimsMeshCheckClosed [ 52%] Built target AimsMeshCleaner Consolidate compiler generated dependencies of target AimsMeshCurvature [ 52%] Built target AimsMeshConnectedComponent file aims/io/defaultItemR.h... Generating docs for file aims/io/defaultItemW.h... Generating docs for file aims/io/directory.h... Generating docs for file aims/io/dtitensorItemR.h... Generating docs for file aims/io/dtitensorItemW.h... Generating docs for file aims/io/ecatfinderformat.h... Generating docs for file aims/io/ecatformat.h... Generating docs for file aims/io/ecatformat_d.h... Generating docs for file aims/io/ecatheader.h... Generating docs for file aims/io/ecatR.h... Generating docs for file aims/io/ecatSinoheader.h... Generating docs for file aims/io/ecatSinoR.h... Generating docs for file aims/io/ecatSinoW.h... Generating docs for file aims/io/ecatW.h... Generating docs for file aims/io/fdffinderformat.h... Generating docs for file aims/io/fdfformat.h... Generating docs for file aims/io/fdfformat_d.h... Generating docs for file aims/io/fdfheader.h... Generating docs for file aims/io/fdfprocpar.h... Generating docs for file aims/io/fdfprocpar_g.h... Generating docs for file aims/io/fdfR.h... Generating docs for file aims/io/fdfutil.h... Generating docs for file aims/io/fileFormat.h... Generating docs for file aims/io/fileFormat_cartovolume_d.h... Generating docs for file aims/io/fileFormat_d.h... Generating docs for file aims/io/finder.h... Generating docs for file aims/io/finderFormats.h... Generating docs for file aims/io/ge_imageFileOffsets.h... Generating docs for file aims/io/ge_imghdr.h... Generating docs for file aims/io/genesisheader.h... Generating docs for file aims/io/genesisR.h... Generating docs for file aims/io/gifti.h... Generating docs for file aims/io/giftifinderformat.h... Generating docs for file aims/io/giftiformat.h... Generating docs for file aims/io/giftiheader.h... Generating docs for file aims/io/giftimeshformat_d.h... Generating docs for file aims/io/giftitextureformat_d.h... Generating docs for file aims/io/giftiutil.h... Generating docs for file aims/io/graphBundlesFormat.h... Generating docs for file aims/io/hieR.h... Generating docs for file aims/io/imasparseheader.h... Generating docs for file aims/io/io_g.h... Generating docs for file aims/io/iooptions.h... Generating docs for file aims/io/itemR.h... Generating docs for file aims/io/itemR_stl.h... Generating docs for file aims/io/itemW.h... Generating docs for file aims/io/itemW_stl.h... Generating docs for file aims/io/jpegfinderformat.h... Generating docs for file aims/io/jpegformat.h... Generating docs for file aims/io/jpegformat_d.h... Generating docs for file aims/io/jpegheader.h... Generating docs for file aims/io/jpegR.h... Generating docs for file aims/io/jpegW.h... Generating docs for file aims/io/labelImage.h... Generating docs for file aims/io/listItemR.h... Generating docs for file aims/io/listItemW.h... Generating docs for file aims/io/macosxbugs.h... Generating docs for file aims/io/meshheader.h... Generating docs for file aims/io/meshR.h... Generating docs for file aims/io/meshW.h... Generating docs for file aims/io/mniobjheader.h... Generating docs for file aims/io/plyfinderformat.h... Generating docs for file aims/io/plyformat.h... Generating docs for file aims/io/plyformat_d.h... Generating docs for file aims/io/plyheader.h... Generating docs for file aims/io/plyr.h... Generating docs for file aims/io/plyw.h... Generating docs for file aims/io/povW.h... Generating docs for file aims/io/process.h... Generating docs for file aims/io/reader.h... Generating docs for file aims/io/reader_d.h... Generating docs for file aims/io/readerasobject.h... Generating docs for file aims/io/roiR.h... Generating docs for file aims/io/scaledcoding.h... Generating docs for file aims/io/selectionr.h... Generating docs for file aims/io/selectionw.h... Generating docs for file aims/io/spmattribconverter.h... Generating docs for file aims/io/spmheader.h... Generating docs for file aims/io/spmR.h... Generating docs for file aims/io/spmR_d.h... Generating docs for file aims/io/spmW.h... Generating docs for file aims/io/spmW_d.h... Generating docs for file aims/io/tensorItemR.h... Generating docs for file aims/io/tensorItemW.h... Gener[ 52%] Built target AimsMeshCurvature [ 52%] Built target AimsMeshDecimation [ 52%] Built target AimsMeshDistance [ 52%] Built target AimsMeshGeodesicDepth [ 52%] Built target AimsMeshLineMeasurement ating docs for file aims/io/texheader.h... Generating docs for file aims/io/texR.h... Generating docs for file aims/io/texW.h... Generating docs for file aims/io/tifffinderformat.h... Generating docs for file aims/io/tiffformat.h... Generating docs for file aims/io/tiffformat_d.h... Generating docs for file aims/io/tiffheader.h... Generating docs for file aims/io/tiffR.h... Generating docs for file aims/io/tiffW.h... Generating docs for file aims/io/triederItemR.h... Generating docs for file aims/io/triederItemW.h... Generating docs for file aims/io/triheader.h... Generating docs for file aims/io/triR.h... Generating docs for file aims/io/triW.h... Generating docs for file aims/io/vidafinderformat.h... Generating docs for file aims/io/vidaformat.h... Generating docs for file aims/io/vidaformat_d.h... Generating docs for file aims/io/vidaheader.h... Generating docs for file aims/io/vidaR.h... Generating docs for file aims/io/vidaW.h... Generating docs for file aims/io/wavefrontheader.h... Generating docs for file aims/io/wavefrontmeshR.h... Generating docs for file aims/io/wavefrontmeshW.h... Generating docs for file aims/io/writer.h... Generating docs for file aims/io/writer_d.h... Generating docs for file aims/io_soma/fsannotformatchecker.h... Generating docs for file aims/io_soma/fsannotformatreader.h... Generating docs for file aims/io_soma/fsannotformatreader_d.h... Generating docs for file aims/io_soma/fscurvformatchecker.h... Generating docs for file aims/io_soma/fscurvformatreader.h... Generating docs for file aims/io_soma/fscurvformatreader_d.h... Generating docs for file aims/io_soma/fssurfformatchecker.h... Generating docs for file aims/io_soma/fssurfformatreader.h... Generating docs for file aims/io_soma/fssurfformatreader_d.h... Generating docs for file aims/io_soma/ltaformatchecker.h... Generating docs for file aims/io_soma/ltaformatreader.h... Generating docs for file aims/io_soma/trm_compose_formatchecker.h... Generating docs for file aims/io_soma/trm_compose_formatreader.h... Generating docs for file aims/io_soma/trm_header_formatchecker.h... Generating docs for file aims/io_soma/trm_header_formatreader.h... Generating docs for file aims/io_soma/trmformatchecker.h... Generating docs for file aims/io_soma/trmformatreader.h... Generating docs for file aims/io_soma/trmformatwriter.h... Generating docs for file aims/io_soma/trmgraphformatchecker.h... Generating docs for file aims/io_soma/trmgraphformatreader.h... Generating docs for file aims/io_soma/trmgraphformatwriter.h... Generating docs for file aims/io_soma/trmingraphformatchecker.h... Generating docs for file aims/io_soma/trmingraphformatreader.h... Generating docs for file aims/io_soma/xfmformatchecker.h... Generating docs for file aims/io_soma/xfmformatreader.h... Generating docs for file aims/io_soma/xfmformatwriter.h... Generating docs for file aims/math/dtitensor.h... Generating docs for file aims/math/gausslu.h... Generating docs for file aims/math/integrator.h... Generating docs for file aims/math/lagrange.h... Generating docs for file aims/math/mathelem.h... Generating docs for file aims/math/mathelemrgb.h... Generating docs for file aims/math/romberg.h... Generating docs for file aims/math/rombergitg.h... Generating docs for file aims/math/tensor.h... Generating docs for file aims/math/trapezeitg.h... Generating docs for file aims/math/trieder.h... Generating docs for file aims/memmap/allocator.h... Generating docs for file aims/mesh/cutmesh.h... Generating docs for file aims/mesh/cutmesh_d.h... Generating docs for file aims/mesh/mesh_rasterization_d.h... Generating docs for file aims/mesh/surface.h... Generating docs for file aims/mesh/surface_g.h... Generating docs for file aims/mesh/surfacegen.h... Generating docs for file aims/mesh/surfacemanip.h... Generating docs for file aims/mesh/surfacemanip_d.h... Generating docs for file aims/mesh/surfaceOperation.h... Generating docs for file aims/mesh/tex2graph.h... Generating docs for file aims/mesh/tex2graph_d.h... Generating docs for file aims/mesh/texture.h... Generating docs for file aims/mes[ 52%] Built target AimsMeshParcellation2VolumeParcellation [ 52%] Built target AimsMeshSmoothing [ 52%] Built target AimsMeshWhite [ 52%] Built target AimsMIRegister /casa/host/build/include/aims/doc/aimsdata_doc.h:381: warning: explicit link request to 'include' could not be resolved /casa/host/build/include/aims/doc/aimsdata_doc.h:383: warning: explicit link request to 'include' could not be resolved /casa/host/build/include/aims/doc/aimsdata_doc.h:384: warning: explicit link request to 'include' could not be resolved [ 52%] Built target AimsMoment [ 52%] Built target AimsMorphoMath h/texturetools.h... Generating docs for file aims/meshprojection/meshprojection.h... Generating docs for file aims/meshprojection/meshprojection_d.h... Generating docs for file aims/plugin/ecatplugin.h... Generating docs for file aims/plugin/fdfplugin.h... Generating docs for file aims/plugin/giftiplugin.h... Generating docs for file aims/plugin/jpegplugin.h... Generating docs for file aims/plugin/plyplugin.h... Generating docs for file aims/plugin/tiffplugin.h... Generating docs for file aims/plugin/vidaplugin.h... Generating docs for file aims/resampling/linearInterpolator.h... Generating docs for file aims/resampling/mask.h... Generating docs for file aims/resampling/mask_d.h... Generating docs for file aims/resampling/motion.h... Generating docs for file aims/resampling/quaternion.h... Generating docs for file aims/resampling/standardreferentials.h... Generating docs for file aims/rgb/rgb.h... Generating docs for file aims/rgb/rgbnorm.h... Generating docs for file aims/roi/fill.h... Generating docs for file aims/roi/fill_d.h... Generating docs for file aims/roi/hie.h... Generating docs for file aims/roi/maskIterator.h... Generating docs for file aims/roi/roi.h... Generating docs for file aims/roi/roi_diff.h... Generating docs for file aims/roi/roi_g.h... Generating docs for file aims/roi/roiIterator.h... Generating docs for file aims/roi/voxelSampling.h... Generating docs for file aims/rply/rply.h... Generating docs for file aims/selection/selection.h... Generating docs for file aims/selection/selector.h... Generating docs for file aims/sino/sino.h... Generating docs for file aims/sino/sino_d.h... Generating docs for file aims/sparsematrix/ciftitools.h... Generating docs for file aims/sparsematrix/sparseMatrix.h... Generating docs for file aims/sparsematrix/sparseMatrixItemR.h... Generating docs for file aims/sparsematrix/sparseMatrixItemW.h... Generating docs for file aims/sparsematrix/sparsematrixutil.h... Generating docs for file aims/sparsematrix/sparseordensematrix.h... Generating docs for file aims/texdata/texdata.h... Generating docs for file aims/transformation/affinetransformation3d.h... Generating docs for file aims/transformation/transformation.h... Generating docs for file aims/transformation/transformation_chain.h... Generating docs for file aims/transformation/transformationgraph3d.h... Generating docs for file aims/utility/anytype_reader.h... Generating docs for file aims/utility/anytype_reader_details.h... Generating docs for file aims/utility/bininverse.h... Generating docs for file aims/utility/boundingbox.h... Generating docs for file aims/utility/channel.h... Generating docs for file aims/utility/clock.h... Generating docs for file aims/utility/converter_bucket.h... Generating docs for file aims/utility/converter_g.h... Generating docs for file aims/utility/converter_hsv.h... Generating docs for file aims/utility/converter_rgb.h... Generating docs for file aims/utility/converter_texture.h... Generating docs for file aims/utility/converter_volume.h... Generating docs for file aims/utility/cyclic_iterator.h... Generating docs for file aims/utility/flip.h... Generating docs for file aims/utility/linearcomb.h... Generating docs for file aims/utility/masscenter.h... Generating docs for file aims/utility/merge.h... Generating docs for file aims/utility/minmax.h... Generating docs for file aims/utility/progress.h... Generating docs for file aims/utility/stl_conversion.h... Generating docs for file aims/utility/threshold.h... Generating docs for file aims/utility/utility_g.h... Generating docs for file aims/vector/vector.h... Generating page documentation... Generating docs for page programming... Generating docs for page api_changes... Generating docs for page aimsvolumes... Generating docs for page input_output... Generating docs for page todo... Generating docs for page deprecated... Generating group documentation... Generating class documentation... Generating docs for compound AimsBinaryInverse... Generating docs for compound AimsBucket... Generating docs for compound AimsBucketItem... Generating doc[ 52%] Built target AimsNormWithRegion [ 52%] Built target AimsParamCorrectDti [ 52%] Built target AimsPCAfilter [ 52%] Built target AimsPCAloc [ 52%] Built target AimsRefineMesh [ 52%] Built target AimsPCAloc2 /casa/host/build/include/aims/resampling/mask.h:46: warning: The following parameters of aims::mask(const BucketMap< Void > &src, const BucketMap< Void > &m, bool intersect=true) are not documented: parameter 'src' parameter 'm' [ 52%] Built target AimsRegisterBMEstimate /casa/host/build/include/aims/border/borderiterator.h:187: warning: argument 'move' of command @param is not found in the argument list of aims::BorderIterator< T >::const_iterator::computeNext(const Point4dl &p) const [ 52%] Built target AimsRegisterFFDFromCoordImages [ 52%] Built target AimsRegisterFFDApply [ 52%] Built target AimsSegmentsToMesh [ 52%] Built target AimsSphereDistribution [ 56%] Built target AimsSNR [ 56%] Built target AimsSplitArray [ 56%] Built target AimsSubTensor [ 56%] Built target AimsSubSampling s for compound AimsColorMapReader... Generating docs for compound AimsColorMapWriter... Generating docs for compound AimsData... Generating docs for nested compound AimsData::Private... Generating docs for compound AimsFlip... Generating docs for compound AimsMerge... Generating docs for compound AimsSurface... Generating docs for compound AimsTexThreshold... Generating docs for compound AimsThreshold... Generating docs for compound AimsTimeSurface... Generating docs for compound ChannelSelector< AimsVector< T, D >, U >... Generating docs for compound ChannelSelector< carto::VolumeRef< T >, carto::VolumeRef< U > >... Generating docs for compound COMPLEX... Generating docs for compound data_history... Generating docs for compound dsr... Generating docs for compound DtiTensor... Generating docs for compound header_key... Generating docs for compound image_dimension... Generating docs for compound imghdr... Generating docs for compound MassCenters... Generating docs for compound SiteIterator... Generating docs for compound SiteIterator< AimsSurface< D, Void > >... Generating docs for compound SiteIterator< carto::VolumeRef< T > >... Generating docs for compound SiteType... Generating docs for compound SiteType< AimsSurface< D, Void > >... Generating docs for compound SiteType< carto::VolumeRef< T > >... Generating docs for compound Tensor... Generating docs for compound Texture... Generating docs for compound TexturedData... Generating docs for compound TexturedData< AimsSurface< D, Void >, Texture< T > >... Generating docs for compound TexturedData< carto::VolumeRef< T >, carto::VolumeRef< T > >... Generating docs for compound TexType... Generating docs for compound TexType< carto::VolumeRef< T > >... Generating docs for compound TexType< Texture< T > >... Generating docs for compound TimeTexture... Generating docs for compound Trieder... Generating namespace index... Generating docs for namespace aims Generating docs for compound aims::BorderFiller... Generating docs for compound aims::BorderIterator... Generating docs for nested compound aims::BorderIterator::const_iterator... Generating docs for nested compound aims::BorderIterator::iterator... Generating docs for compound aims::BucketMap... Generating docs for compound aims::CoordinatesLess... Generating docs for compound aims::CoordinatesLess< T, 3 >... Generating docs for compound aims::BucketUtil... Generating docs for compound aims::SparseVolume... Generating docs for compound aims::SparseVolume< carto::Volume< T > >... Generating docs for nested compound aims::SparseVolume< carto::Volume< T > >::const_iterator... Generating docs for nested compound aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage... Generating docs for nested compound aims::SparseVolume< carto::Volume< T > >::iterator... Generating docs for nested compound aims::SparseVolume< carto::Volume< T > >::LowLevelStorage... Generating docs for compound aims::SparseVolume< BucketMap< T > >... Generating docs for compound aims::SparseVolume< BucketMap< Void > >... Generating docs for compound aims::BucketMapGenerator... Generating docs for nested compound aims::BucketMapGenerator::Generator... Generating docs for compound aims::ColorMap... Generating docs for compound aims::Connectivity... Generating docs for compound aims::ConnectedComponentEngine... Generating docs for compound aims::ConnectedComponentEngine< carto::VolumeRef< T >, carto::VolumeRef< O > >... Generating docs for compound aims::StructuringElement... Generating docs for compound aims::StructuredVolume... Generating docs for compound aims::StructuredConstVolume... Generating docs for compound aims::StructuringElementRef... Generating docs for compound aims::Polyline... Generating docs for compound aims::PolylinePolynomialInterpolator... Generating docs for nested compound aims::PolylinePolynomialInterpolator::Sampler... Generating docs for compound aims::AimsFastAllocationData... Generating docs for compound aims::Header... Generating docs for compound aims::PythonHeader... Generating docs for compound aims::SliceFormatHeader..[ 56%] Built target AimsSulcusSPAM [ 56%] Built target AimsTMStarget [ 56%] Built target AimsSumFrame [ 56%] Built target AimsTalairachTransform [ 56%] Built target AimsTensorExtract [ 56%] Built target AimsTensorSNR /casa/host/build/include/aims/fibers/bundleSampler.h:65: warning: The following parameter of aims::BundleSampler::BundleSampler(float percent, const std::string &bundle_name, const std::string &sampled_bundle_name, int mode) is not documented: parameter 'sampled_bundle_name' /casa/host/build/include/aims/fibers/bundleSampler.h:76: warning: The following parameter of aims::BundleSampler::BundleSampler(float percent, const std::string &bundle_name, const std::string &sampled_bundle_name, int mode, bool discarded) is not documented: parameter 'sampled_bundle_name' [ 56%] Built target AimsTexture2Primal Consolidate compiler generated dependencies of target AimsTextureRegularization /casa/host/build/include/aims/io/process.h:215: warning: Found unknown command '\process' [ 56%] Built target AimsTextureAverage /casa/host/build/include/aims/io/process.h:215: warning: Found unknown command '\process' [ 60%] Built target AimsTextureRegularization /casa/host/build/include/aims/io/process.h:215: warning: Found unknown command '\process' [ 60%] Built target AimsTextureDerivative [ 60%] Built target AimsTextureErosion [ 60%] Built target AimsTextureDilation [ 60%] Built target AimsTexturePrimalSketch . Generating docs for compound aims::Path... Generating docs for compound aims::Settings... Generating docs for compound aims::ScalarFeaturesProvider... Generating docs for compound aims::ScalarSetFeatures... Generating docs for compound aims::PointSetFeatures... Generating docs for compound aims::PointsInImageFeatures... Generating docs for compound aims::RoiFeatures... Generating docs for compound aims::Bundle... Generating docs for compound aims::Bundles... Generating docs for compound aims::FiberInfo... Generating docs for compound aims::BundleInfo... Generating docs for compound aims::BundleListener... Generating docs for compound aims::BundleProducer... Generating docs for compound aims::BundleWriter... Generating docs for compound aims::BundleReader... Generating docs for compound aims::BundleFormatReader... Generating docs for compound aims::ConnectomistBundlesReader... Generating docs for compound aims::BundleToGraph... Generating docs for compound aims::BundleToGraphWriter... Generating docs for compound aims::BundleROISplit... Generating docs for compound aims::BundleROISelect... Generating docs for compound aims::BundleMotion... Generating docs for compound aims::CurveSelection... Generating docs for compound aims::CurveOrientation... Generating docs for compound aims::BundlesFeatures... Generating docs for compound aims::BundlesFusion... Generating docs for compound aims::BundleRegroup... Generating docs for compound aims::BundleSampler... Generating docs for compound aims::BundlesSlicerListener... Generating docs for compound aims::BundlesSlicer... Generating docs for compound aims::SimpleBundlesSlicer... Generating docs for compound aims::BundleSlicesToMesh... Generating docs for compound aims::FiberOversampler... Generating docs for compound aims::MRTrixBundleReader... Generating docs for compound aims::TrackvisBundleReader... Generating docs for compound aims::AimsApplication... Generating docs for compound aims::ProcessInput... Generating docs for compound aims::GraphElementCode... Generating docs for compound aims::GraphManip... Generating docs for compound aims::AimsGraphReader... Generating docs for nested compound aims::AimsGraphReader::ElementInfo... Generating docs for nested compound aims::AimsGraphReader::ObjectWrapper... Generating docs for nested compound aims::AimsGraphReader::PostProcessor... Generating docs for nested compound aims::AimsGraphReader::Wrapper... Generating docs for compound aims::AimsGraphWriter... Generating docs for nested compound aims::AimsGraphWriter::ElementInfo... Generating docs for nested compound aims::AimsGraphWriter::ObjectWrapper... Generating docs for nested compound aims::AimsGraphWriter::Wrapper... Generating docs for compound aims::AimsGraphWriter_Private... Generating docs for compound aims::APCReader... Generating docs for compound aims::ArgHeader... Generating docs for compound aims::LowLevelArgReader... Generating docs for compound aims::ArgReader... Generating docs for compound aims::LowLevelStandardArgReader... Generating docs for compound aims::LowLevelArgWriter... Generating docs for compound aims::ArgWriter... Generating docs for compound aims::LowLevelStandardArgWriter... Generating docs for compound aims::BckFormat... Generating docs for compound aims::BckMapFormat... Generating docs for compound aims::VolumeFormat... Generating docs for compound aims::VolumeRefFormat... Generating docs for compound aims::VolumeRefAimsFormat... Generating docs for compound aims::MinfFormat... Generating docs for compound aims::ArgFormat... Generating docs for compound aims::GraphVolumeFormat... Generating docs for compound aims::HieFormat... Generating docs for compound aims::MeshFormat... Generating docs for compound aims::TriFormat... Generating docs for compound aims::PovFormat... Generating docs for compound aims::Vrml1Format... Generating docs for compound aims::MniObjFormat... Generating docs for compound aims::WavefrontMeshFormat... Generating docs for compound aims::ImasFormat... Generating docs for compound aims::ImasSorDFormat... Generating docs for compo[ 60%] Built target AimsTextureScaleSpace [ 60%] Built target AimsTextureSmoothing [ 60%] Built target AimsTextureThreshold [ 60%] Built target AimsTextureVoronoi [ 60%] Built target AimsTopologicalClassification [ 60%] Built target AimsValidateFit [ 60%] Built target AimsVeinExtraction [ 60%] Built target AimsVFilter [ 60%] Built target AimsVoiStat [ 60%] Built target AimsVol2Tex [ 60%] Built target AimsVoronoi und aims::StxFormat... Generating docs for compound aims::TexFormat... Generating docs for compound aims::SpmFormat... Generating docs for compound aims::GenesisFormat... Generating docs for compound aims::ImasVolFormat... Generating docs for compound aims::SomaIOAimsDataFormat... Generating docs for compound aims::BckHeader... Generating docs for compound aims::DefaultItemReader< AimsBucketItem< T > >... Generating docs for compound aims::DefaultAsciiItemReader< AimsBucketItem< T > >... Generating docs for compound aims::DefaultBSwapItemReader< AimsBucketItem< T > >... Generating docs for compound aims::DefaultItemWriter< AimsBucketItem< T > >... Generating docs for compound aims::DefaultAsciiItemWriter< AimsBucketItem< T > >... Generating docs for compound aims::DefaultBSwapItemWriter< AimsBucketItem< T > >... Generating docs for compound aims::BckReader... Generating docs for compound aims::BckWriter... Generating docs for compound aims::BckMapReader... Generating docs for compound aims::BckMapWriter... Generating docs for compound aims::ChannelReader... Generating docs for compound aims::CoarseReader... Generating docs for compound aims::DefaultItemReader... Generating docs for compound aims::DefaultAsciiItemReader... Generating docs for compound aims::DefaultBSwapItemReader... Generating docs for compound aims::DefaultItemReader< AimsVector< T, D > >... Generating docs for compound aims::DefaultBSwapItemReader< AimsVector< T, D > >... Generating docs for compound aims::DefaultItemWriter... Generating docs for compound aims::DefaultAsciiItemWriter... Generating docs for compound aims::DefaultBSwapItemWriter... Generating docs for compound aims::DefaultItemWriter< AimsVector< T, D > >... Generating docs for compound aims::DefaultBSwapItemWriter< AimsVector< T, D > >... Generating docs for compound aims::DefaultItemReader< DtiTensor >... Generating docs for compound aims::DefaultAsciiItemReader< DtiTensor >... Generating docs for compound aims::DefaultBSwapItemReader< DtiTensor >... Generating docs for compound aims::DefaultItemWriter< DtiTensor >... Generating docs for compound aims::DefaultAsciiItemWriter< DtiTensor >... Generating docs for compound aims::DefaultBSwapItemWriter< DtiTensor >... Generating docs for compound aims::Finder... Generating docs for compound aims::FinderSpmFormat... Generating docs for compound aims::FinderGenesisFormat... Generating docs for compound aims::FinderMeshFormat... Generating docs for compound aims::FinderTriFormat... Generating docs for compound aims::FinderMniObjFormat... Generating docs for compound aims::FinderWavefrontFormat... Generating docs for compound aims::FinderTexFormat... Generating docs for compound aims::FinderBckFormat... Generating docs for compound aims::FinderGraphFormat... Generating docs for compound aims::FinderHieFormat... Generating docs for compound aims::FinderImasFormat... Generating docs for compound aims::FileFormat... Generating docs for compound aims::FinderFormat... Generating docs for compound aims::FileFormatDictionary... Generating docs for compound aims::IOObjectTypesDictionary... Generating docs for compound aims::GenesisHeader... Generating docs for compound aims::GenesisReader... Generating docs for compound aims::GraphBundlesFormat... Generating docs for compound aims::HierarchyReader... Generating docs for compound aims::ImasHeader... Generating docs for compound aims::IOOptions... Generating docs for compound aims::ItemReader... Generating docs for compound aims::DefaultItemReader< std::vector< T > >... Generating docs for compound aims::DefaultBSwapItemReader< std::vector< T > >... Generating docs for compound aims::DefaultAsciiItemReader< std::vector< T > >... Generating docs for compound aims::ItemWriter... Generating docs for compound aims::DefaultItemWriter< std::vector< T > >... Generating docs for compound aims::DefaultBSwapItemWriter< std::vector< T > >... Generating docs for compound aims::DefaultAsciiItemWriter< std::vector< T > >... Generating docs for compound aims::LabelReader... Generating docs for compound aims::DefaultItem[ 60%] Built target AimsZCat /casa/host/build/include/aims/io/spmR.h:79: warning: argument 'border' of command @param is not found in the argument list of aims::SpmReader< T >::read(AimsData< T > &thing, const carto::AllocatorContext &context, carto::Object options) /casa/host/build/include/aims/io/spmR.h:83: warning: The following parameters of aims::SpmReader::read(AimsData< T > &thing, const carto::AllocatorContext &context, carto::Object options) are not documented: parameter 'context' parameter 'options' [ 60%] Built target AimsSiemensEPI2Volume [ 60%] Built target aimsecat /casa/host/build/include/aims/io/process.h:215: warning: Found unknown command '\process' [ 60%] Built target AimsRegisterFFDEstimate [ 60%] Built target AimsBundleSelectCenter /casa/host/build/include/aims/io/process.h:215: warning: Found unknown command '\process' /casa/host/build/include/aims/io/process.h:215: warning: Found unknown command '\process' [ 60%] Built target mkhierarchy-anatomist QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa' [ 60%] Built target aimsgui /casa/host/build/include/aims/mesh/surfacemanip.h:167: warning: Unsupported xml/html tag <region> found /casa/host/build/include/aims/mesh/surfacemanip.h:175: warning: Unsupported xml/html tag <region> found /casa/host/build/include/aims/mesh/surfacemanip.h:167: warning: Unsupported xml/html tag <region> found /casa/host/build/include/aims/mesh/surfacemanip.h:175: warning: Unsupported xml/html tag <region> found [ 60%] Built target highres-cortex Reader< std::list< T > >... Generating docs for compound aims::DefaultAsciiItemReader< std::list< T > >... Generating docs for compound aims::DefaultBSwapItemReader< std::list< T > >... Generating docs for compound aims::DefaultItemWriter< std::list< T > >... Generating docs for compound aims::DefaultAsciiItemWriter< std::list< T > >... Generating docs for compound aims::DefaultBSwapItemWriter< std::list< T > >... Generating docs for compound aims::MniObjHeader... Generating docs for compound aims::PovWriter... Generating docs for compound aims::ScaledEncoding... Generating docs for compound aims::SelectionReader... Generating docs for compound aims::SelectionWriter... Generating docs for compound aims::SpmReader... Generating docs for compound aims::SpmHeader... Generating docs for compound aims::SpmWriter... Generating docs for compound aims::DefaultItemReader< Trieder >... Generating docs for compound aims::DefaultAsciiItemReader< Trieder >... Generating docs for compound aims::DefaultBSwapItemReader< Trieder >... Generating docs for compound aims::DefaultItemWriter< Trieder >... Generating docs for compound aims::DefaultAsciiItemWriter< Trieder >... Generating docs for compound aims::DefaultBSwapItemWriter< Trieder >... Generating docs for compound aims::Reader... Generating docs for compound aims::ReaderAsObject... Generating docs for compound aims::GenericWriter... Generating docs for compound aims::Writer... Generating docs for compound aims::MeshHeader... Generating docs for compound aims::MeshReader... Generating docs for compound aims::MeshWriter... Generating docs for compound aims::LowLevelRoiReader... Generating docs for compound aims::DefaultItemReader< Tensor >... Generating docs for compound aims::DefaultAsciiItemReader< Tensor >... Generating docs for compound aims::DefaultBSwapItemReader< Tensor >... Generating docs for compound aims::DefaultItemWriter< Tensor >... Generating docs for compound aims::DefaultAsciiItemWriter< Tensor >... Generating docs for compound aims::DefaultBSwapItemWriter< Tensor >... Generating docs for compound aims::TexHeader... Generating docs for compound aims::TexReader... Generating docs for compound aims::TexWriter... Generating docs for compound aims::TriHeader... Generating docs for compound aims::TriReader... Generating docs for compound aims::TriWriter... Generating docs for compound aims::Process... Generating docs for compound aims::WavefrontHeader... Generating docs for compound aims::WavefrontMeshWriter... Generating docs for compound aims::WavefrontMeshWriter< D, Void >... Generating docs for compound aims::WavefrontMeshReader... Generating docs for compound aims::IntegrableOf... Generating docs for compound aims::IntegratorOf... Generating docs for compound aims::MathUtil... Generating docs for compound aims::RombergIntegratorOf... Generating docs for compound aims::TrapezeIntegratorOf... Generating docs for compound aims::CutMesh... Generating docs for compound aims::CutTexturedMesh... Generating docs for compound aims::SurfaceGenerator... Generating docs for nested compound aims::SurfaceGenerator::Generator... Generating docs for nested compound aims::SurfaceGenerator::Generator_wireframe... Generating docs for compound aims::SurfaceManip... Generating docs for compound aims::Tex2Graph... Generating docs for compound aims::MeshProjection... Generating docs for compound aims::MeshProjectionFactory... Generating docs for compound aims::DecomposedAffineTransformation3d... Generating docs for compound aims::Interpolator... Generating docs for compound aims::LinearInterpolator... Generating docs for compound aims::Quaternion... Generating docs for compound aims::StandardReferentials... Generating docs for compound aims::Hierarchy... Generating docs for compound aims::specifiedLabels... Generating docs for compound aims::MaskIterator... Generating docs for compound aims::MotionedMaskIterator... Generating docs for compound aims::MaskIteratorOf... Generating docs for compound aims::NodeFilter... Generating docs for compound aims::LabelNodeFilter... Generating docs for co[ 64%] Built target vip [ 64%] Built target brainrat [ 68%] Built target primatologist [ 72%] Built target sigraph /casa/host/build/include/aims/io/process.h:215: warning: Found unknown command '\process' [ 72%] Create "share/doc/5.2" [ 72%] Built target constellation /casa/host/build/include/aims/utility/progress.h:77: warning: The following parameter of aims::ProgressInfo::ProgressInfo(const T1 min, const T1 max, const T2 progressmin=(T2) 0, const T2 progressmax=(T2) 100, const std::string unit="%%", const int width=3, std::ostream &stream=std::cout) is not documented: parameter 'stream' /casa/host/build/include/aims/utility/progress.h:87: warning: The following parameter of aims::ProgressInfo::ProgressInfo(const T1 max, std::ostream &stream=std::cout) is not documented: parameter 'stream' Consolidate compiler generated dependencies of target cortical_surface [ 72%] Built target morphologist-ui-devdoc [ 72%] Built target AimsReplaceLevel [ 76%] Built target cortical_surface /casa/host/build/include/aims/io/vidaR.h:67: warning: The following parameters of aims::VidaReader::read(AimsData< T > &thing, const carto::AllocatorContext &context, carto::Object options) are not documented: parameter 'context' parameter 'options' [ 76%] Built target AimsRTiff [ 76%] Built target AimsFovSplit [ 76%] Built target AimsSumPETFrame mpound aims::NameNodeFilter... Generating docs for compound aims::MaskIteratorOf< Graph >... Generating docs for compound aims::MaskIteratorOf< carto::VolumeRef< T > >... Generating docs for compound aims::ROILabelMap... Generating docs for compound aims::VolumeROILabelMap... Generating docs for compound aims::MotionedVolumeROILabelMap... Generating docs for compound aims::RoiIterator... Generating docs for compound aims::MotionedRoiIterator... Generating docs for compound aims::RoiIteratorOf... Generating docs for compound aims::RoiIteratorOf< Graph >... Generating docs for compound aims::RoiIteratorOf< carto::VolumeRef< T > >... Generating docs for compound aims::AimsRoi... Generating docs for compound aims::RoiDiff... Generating docs for nested compound aims::RoiDiff::DiffStat... Generating docs for compound aims::VoxelSampler... Generating docs for compound aims::SimpleVoxelSampler... Generating docs for compound aims::Selection... Generating docs for compound aims::SelectionSet... Generating docs for compound aims::Selector... Generating docs for compound aims::SelectionExpander... Generating docs for compound aims::CiftiTools... Generating docs for compound aims::SparseMatrix... Generating docs for compound aims::DefaultItemReader< SparseMatrix >... Generating docs for compound aims::DefaultAsciiItemReader< SparseMatrix >... Generating docs for compound aims::DefaultBSwapItemReader< SparseMatrix >... Generating docs for compound aims::DefaultItemWriter< SparseMatrix >... Generating docs for compound aims::DefaultAsciiItemWriter< SparseMatrix >... Generating docs for compound aims::DefaultBSwapItemWriter< SparseMatrix >... Generating docs for compound aims::SparseMatrixUtil... Generating docs for compound aims::SparseOrDenseMatrix... Generating docs for nested compound aims::SparseOrDenseMatrix::MatrixLazyReader... Generating docs for compound aims::AffineTransformation3d... Generating docs for compound aims::TransformationChain3d... Generating docs for compound aims::TransformationGraph3d... Generating docs for compound aims::AnyTypeReaderProcess... Generating docs for compound aims::AnyTypeReader... Generating docs for compound aims::BoundingBox... Generating docs for compound aims::Clock... Generating docs for compound aims::const_cyclic_iterator... Generating docs for compound aims::cyclic_iterator... Generating docs for compound aims::AimsLinearCombination... Generating docs for compound aims::Replacer... Generating docs for compound aims::ProgressInfo... Generating docs for compound aims::EcatFormat... Generating docs for compound aims::EcatHeader... Generating docs for compound aims::EcatReader... Generating docs for compound aims::EcatSinoHeader... Generating docs for compound aims::EcatSinoReader... Generating docs for compound aims::EcatSinoWriter... Generating docs for compound aims::EcatWriter... Generating docs for compound aims::FinderEcatFormat... Generating docs for compound aims::EcatPlugin... Generating docs for compound aims::ScannerConf... Generating docs for compound aims::Sinogram... Generating docs for compound aims::FinderVidaFormat... Generating docs for compound aims::VidaFormat... Generating docs for compound aims::VidaHeader... Generating docs for compound aims::VidaReader... Generating docs for compound aims::VidaWriter... Generating docs for compound aims::VidaPlugin... Generating docs for compound aims::PlyFormat... Generating docs for compound aims::PlyHeader... Generating docs for compound aims::PlyReader... Generating docs for compound aims::PlyWriter... Generating docs for compound aims::FinderPlyFormat... Generating docs for compound aims::PlyPlugin... Generating docs for compound aims::FdfFormat... Generating docs for compound aims::FdfHeader... Generating docs for compound aims::FdfReader... Generating docs for compound aims::FinderFdfFormat... Generating docs for compound aims::FdfParType... Generating docs for compound aims::FdfProcPar... Generating docs for compound aims::FdfPlugin... Generating docs for compound aims::JpegFormat... Generating docs for compound aims::JpegHead[ 76%] Built target AimsAttributedViewer [ 76%] Built target AimsLabelSelector QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-a-sac-ns-brainvisa' [ 76%] Built target ylLaplacian [ 76%] Built target ylIsoCurvature /casa/host/build/include/aims/data/cartodatavolume.h:63: warning: End of list marker found without any preceding list items [ 76%] Built target ylAdvectEuclidean [ 76%] Built target ylAdvectPath er... Generating docs for compound aims::JpegReader... Generating docs for compound aims::JpegWriter... Generating docs for compound aims::FinderJpegFormat... Generating docs for compound aims::JpegPlugin... Generating docs for compound aims::TiffFormat... Generating docs for compound aims::TiffHeader... Generating docs for compound aims::TiffReader... Generating docs for compound aims::TiffWriter... Generating docs for compound aims::FinderTiffFormat... Generating docs for compound aims::TiffPlugin... Generating docs for compound aims::GiftiMeshFormat... Generating docs for compound aims::GiftiTextureFormat... Generating docs for compound aims::GiftiHeader... Generating docs for compound aims::FinderGiftiFormat... Generating docs for compound aims::_convertedNiftiValue... Generating docs for compound aims::_convertedNiftiValue< AimsVector< U, D > >... Generating docs for compound aims::_convertedNiftiArrayValue... Generating docs for compound aims::_convertedNiftiArrayValue< AimsVector< U, D > >... Generating docs for compound aims::GiftiPlugin... Generating docs for namespace aims::DataManip Generating docs for namespace aims::detail Generating docs for compound aims::detail::cyclic_iterator_base... Generating docs for namespace aims::internal Generating docs for compound aims::internal::AimsGraphReader_Private... Generating docs for namespace aims::strel Generating docs for compound aims::strel::Shape... Generating docs for compound aims::strel::ShapeFactory... Generating docs for compound aims::strel::Connectivity... Generating docs for compound aims::strel::ConnectivityFactory... Generating docs for compound aims::strel::ClockWiseCircleXY... Generating docs for namespace carto Generating docs for compound carto::DataTypeCode< AimsBucket< T > >... Generating docs for compound carto::DataTypeCode< aims::BucketMap< T > >... Generating docs for compound carto::DataTypeCode< AimsData< T > >... Generating docs for compound carto::Divider< AimsVector< T, D >, U >... Generating docs for compound carto::AimsDataInfo... Generating docs for compound carto::SingleOption< aims::Reader< T > >... Generating docs for compound carto::SingleOption< aims::Writer< T > >... Generating docs for compound carto::DataTypeCode< AimsTimeSurface< D, T > >... Generating docs for compound carto::DataTypeCode< AimsTimeSurface< 2, T > >... Generating docs for compound carto::DataTypeCode< AimsTimeSurface< 4, T > >... Generating docs for compound carto::DataTypeCode< TimeTexture< T > >... Generating docs for compound carto::DataTypeCode< aims::SparseMatrix >... Generating docs for compound carto::DataTypeCode< aims::SparseOrDenseMatrix >... Generating docs for compound carto::DataTypeCode< aims::AffineTransformation3d >... Generating docs for compound carto::RawConverter< aims::BucketMap< INP >, aims::BucketMap< OUTP > >... Generating docs for compound carto::RawConverter< aims::BucketMap< INP >, rc_ptr< Volume< OUTP > > >... Generating docs for compound carto::RawConverter< aims::BucketMap< INP >, VolumeRef< OUTP > >... Generating docs for compound carto::RawConverter< aims::BucketMap< Void >, rc_ptr< Volume< OUTP > > >... Generating docs for compound carto::RawConverter< aims::BucketMap< Void >, VolumeRef< OUTP > >... Generating docs for compound carto::RawConverter< rc_ptr< Volume< INP > >, aims::BucketMap< OUTP > >... Generating docs for compound carto::RawConverter< VolumeRef< INP >, aims::BucketMap< OUTP > >... Generating docs for compound carto::RawConverter< rc_ptr< Volume< INP > >, aims::BucketMap< Void > >... Generating docs for compound carto::RawConverter< VolumeRef< INP >, aims::BucketMap< Void > >... Generating docs for compound carto::ConverterAllocator< aims::BucketMap< INP >, aims::BucketMap< OUTP > >... Generating docs for compound carto::ConverterAllocator< aims::BucketMap< INP >, rc_ptr< Volume< OUTP > > >... Generating docs for compound carto::ConverterAllocator< aims::BucketMap< INP >, VolumeRef< OUTP > >... Generating docs for compound carto::RawConverter< INP, AimsHSV >... Generating docs for compound carto::RawConverter< Ai[ 76%] Built target ylAdvectTubes [ 76%] Built target ylAdvectValues msHSV, OUTP >... Generating docs for compound carto::RawConverter< AimsHSV, AimsRGB >... Generating docs for compound carto::RawConverter< AimsHSV, AimsRGBA >... Generating docs for compound carto::RawConverter< AimsRGB, AimsHSV >... Generating docs for compound carto::RawConverter< AimsRGBA, AimsHSV >... Generating docs for compound carto::RawConverter< INP, AimsRGB >... Generating docs for compound carto::RawConverter< INP, AimsRGBA >... Generating docs for compound carto::RawConverter< AimsRGB, OUTP >... Generating docs for compound carto::RawConverter< AimsRGBA, OUTP >... Generating docs for compound carto::RawConverter< AimsRGB, AimsRGBA >... Generating docs for compound carto::RawConverter< AimsRGBA, AimsRGB >... Generating docs for compound carto::RawConverter< AimsVector< T, D >, AimsRGB >... Generating docs for compound carto::RawConverter< AimsRGB, AimsVector< T, D > >... Generating docs for compound carto::RawConverter< AimsVector< T, D >, AimsRGBA >... Generating docs for compound carto::RawConverter< AimsRGBA, AimsVector< T, D > >... Generating docs for compound carto::RawConverter< TimeTexture< INP >, TimeTexture< OUTP > >... Generating docs for compound carto::RawConverter< carto::VolumeRef< INP >, carto::VolumeRef< OUTP > >... Generating docs for compound carto::Rescaler< carto::VolumeRef< INP >, carto::VolumeRef< OUTP > >... Generating docs for compound carto::RawConverter< carto::VolumeRef< INP >, carto::VolumeRef< INP > >... Generating docs for compound carto::ShallowConverter< carto::VolumeRef< INP >, carto::VolumeRef< INP > >... Generating docs for compound carto::ConverterAllocator< carto::VolumeRef< INP >, carto::VolumeRef< OUTP > >... Generating docs for compound carto::ConverterAllocator< carto::VolumeRef< INP >, carto::VolumeRef< INP > >... Generating docs for compound carto::ConverterSwitch< carto::VolumeRef< INP >, carto::VolumeRef< INP >, false >... Generating docs for compound carto::ConverterSwitch< carto::VolumeRef< INP >, carto::VolumeRef< INP >, true >... Generating docs for compound carto::SmartConverter< carto::VolumeRef< INP >, carto::VolumeRef< INP > >... Generating docs for compound carto::Rescaler< VolumeRef< AimsVector< T, D > >, VolumeRef< AimsRGB > >... Generating docs for compound carto::Rescaler< VolumeRef< AimsRGB >, VolumeRef< AimsVector< T, D > > >... Generating docs for namespace carto::internal Generating docs for compound carto::internal::VolumePrinter... Generating docs for compound carto::internal::VolumePrinter< OUTP, true >... Generating docs for compound carto::internal::VolumePrinter< OUTP, false >... Generating docs for namespace internal Generating docs for compound internal::thresh1... Generating docs for compound internal::between_with_bounds... Generating docs for compound internal::between_with_upper_bound... Generating docs for compound internal::between_with_lower_bound... Generating docs for compound internal::between_without_bounds... Generating docs for compound internal::outside_with_bounds... Generating docs for compound internal::outside_with_upper_bound... Generating docs for compound internal::outside_with_lower_bound... Generating docs for compound internal::outside_without_bounds... Generating docs for compound internal::thresh2... Generating docs for compound internal::clip1... Generating docs for compound internal::rel_between_with_bounds... Generating docs for compound internal::rel_between_with_lower_bound... Generating docs for compound internal::rel_between_with_upper_bound... Generating docs for compound internal::rel_between_without_bounds... Generating docs for compound internal::clip2... Generating docs for compound internal::thresh1_bin... Generating docs for compound internal::thresh2_bin... Generating docs for namespace soma Generating docs for compound soma::FsAnnotFormatChecker... Generating docs for compound soma::FsAnnotFormatReader... Generating docs for compound soma::FsCurvFormatChecker... Generating docs for compound soma::FsCurvFormatReader... Generating docs for compound soma::FsSurfFormatChecker... Generating docs for compo[ 76%] Built target ylPropagateAlongField [ 76%] Built target ylLabelEachVoxel [ 76%] Built target ylMakeTraversePseudoAreaMap [ 76%] Built target ylMergeCortexColumnRegions Could not use Matplotlib: <class 'ImportError'> Cannot load backend 'Qt5Agg' which requires the 'qt' interactive framework, as 'headless' is currently running Qt offscreen does not work. Cannot allocate an OpenGL context. Using Xvfb if possible. using DISPLAY=:3 VirtualGL found. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date [ 76%] Built target VipBiasCorrection updating environment: 0 added, 0 changed, 0 removed reading sources... looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../../share/doc/axon-5.2/dev_doc. [ 76%] Built target ylUpwindDistance Qt offscreen does not work. Cannot allocate an OpenGL context. Using Xvfb if possible. using DISPLAY=:1 VirtualGL found. global modules: /casa/host/build/share/anatomist-5.2/python_plugins home modules: /casa/home/.anatomist/python_plugins loading module ana_image_math loading module gradientpalette loading module statsplotwindow loading module foldsplit loading module meshsplit loading module measure loading module save_resampled loading module bsa_proba loading module paletteViewer loading module infowindow loading module palettecontrols loading module anacontrolmenu loading module bundles_split_by_cortical_regions loading module modelGraphs loading module gltf_io loading module simple_controls loading module profilewindow loading module volumepalettes loading module valuesplotwindow loading module selection loading module histogram loading module bundles_small_brains all python modules loaded Anatomist started. Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files. loading pickled environment... [ 76%] Built target VipClosing [ 76%] Built target VipCovarianceMatrix [ 76%] Built target VipDeriche [ 76%] Built target VipDilation [ 76%] Built target VipDistanceMap [ 76%] Built target VipErosion [ 76%] Built target VipExtEdge [ 84%] Built target anatomist [ 84%] Built target VipFoetusHomotopicSnake [ 84%] Built target VipFileDump [ 84%] Built target VipFoldArg [ 84%] Built target VipFoldArgAtt [ 84%] Built target VipGeometry [ 84%] Built target VipGetBrain [ 84%] Built target VipGreyStatFromClassif [ 84%] Built target VipGetHead [ 84%] Built target VipGreyWhiteClassif [ 84%] Built target VipHomotopic [ 84%] Built target VipHistoAnalysis [ 84%] Built target VipHomotopicSnake [ 84%] Built target VipHyste [ 84%] Built target VipLabelContour [ 84%] Built target VipLabelArg [ 84%] Built target VipLabelOverlap [ 84%] Built target VipListLabel [ 84%] Built target VipLabelMatching und soma::FsSurfFormatReader... Generating docs for compound soma::LtaFormatChecker... Generating docs for compound soma::LtaFormatReader... Generating docs for compound soma::LtaT3DFormatReader... Generating docs for compound soma::TrmFormatChecker... Generating docs for compound soma::TrmFormatWriter... Generating docs for compound soma::Trm3DFormatWriter... Generating docs for compound soma::TrmFormatReader... Generating docs for compound soma::TrmT3DFormatReader... Generating docs for compound soma::TrmGraphFormatChecker... Generating docs for compound soma::TrmGraphFormatReader... Generating docs for compound soma::TrmGraphFormatWriter... Generating docs for compound soma::TrmInGraphFormatChecker... Generating docs for compound soma::TrmInGraphFormatReader... Generating docs for compound soma::TrmComposeFormatChecker... Generating docs for compound soma::TrmChainFormatChecker... Generating docs for compound soma::TrmComposeFormatReader... Generating docs for compound soma::TrmChainFormatReader... Generating docs for compound soma::TrmHeaderFormatChecker... Generating docs for compound soma::TrmHeaderFormatReader... Generating docs for compound soma::XfmFormatChecker... Generating docs for compound soma::XfmFormatReader... Generating docs for compound soma::XfmT3DFormatReader... Generating docs for compound soma::XfmFormatWriter... Generating docs for compound soma::Xfm3DFormatWriter... Generating docs for compound std::numeric_limits< carto::Volume< _Tp > >... Generating docs for compound std::numeric_limits< carto::VolumeRef< _Tp > >... Generating graph info page... Generating directory documentation... Generating dependency graph for directory aims Generating dependency graph for directory aims/border Generating dependency graph for directory aims/bucket Generating dependency graph for directory aims/color Generating dependency graph for directory aims/connectivity Generating dependency graph for directory aims/curve Generating dependency graph for directory aims/data Generating dependency graph for directory aims/def Generating dependency graph for directory aims/features Generating dependency graph for directory aims/fibers Generating dependency graph for directory aims/getopt Generating dependency graph for directory aims/graph Generating dependency graph for directory aims/io Generating dependency graph for directory aims/io_soma Generating dependency graph for directory aims/math Generating dependency graph for directory aims/mesh Generating dependency graph for directory aims/meshprojection Generating dependency graph for directory aims/resampling Generating dependency graph for directory aims/roi Generating dependency graph for directory aims/sino Generating dependency graph for directory aims/sparsematrix Generating dependency graph for directory aims/texdata Generating dependency graph for directory aims/transformation Generating dependency graph for directory aims/utility Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... lookup cache used 14275/65536 hits=132510 misses=16798 finished... [ 84%] Built target VipMatching [ 84%] Built target VipMinimizeInformation [ 84%] Built target VipMerge [ 84%] Built target aimsdata-doxygen [ 84%] Built target VipOpening [ 84%] Built target VipOpenFold [ 84%] Built target VipMoment [ 84%] Built target VipPca [ 84%] Built target VipSplitBrain [ 84%] Built target VipSkeleton [ 84%] Built target VipSetPointValue [ 84%] Built target VipSwapEndian [ 84%] Built target VipTalairachTransform [ 84%] Built target VipT1BiasCorrection [ 84%] Built target VipTalairachCoordinates [ 84%] Built target VipTopoClassifMeaning [ 84%] Built target VipTopoClassification [ 84%] Built target vip_test_well_composed_topology [ 84%] Built target vip_test_well_composed_configurations [ 84%] Built target siChangeModels [ 84%] Built target siDivNameList [ 84%] Built target siCopyNames [ 84%] Built target readFolds [ 84%] Built target siEnergy [ 84%] Built target siErrorStats [ 84%] Built target siError [ 84%] Built target siDomTrain [ 84%] Built target siFunctionalGraphs [ 84%] Built target siGraph2Label [ 84%] Built target sigraph-config [ 84%] Built target siFlip [ 84%] Built target siMakeColoredHierarchy [ 84%] Built target siLyxErrors [ 84%] Built target siLearn [ 84%] Built target siMakeModel [ 84%] Built target siMakeParcellationHierarchy [ 84%] Built target siMeshSulciOperture [ 84%] Built target siMeshSulciProjection [ 84%] Built target siMergeModels [ 84%] Built target siParcellation [ 84%] Built target siMkModelEdges [ 84%] Built target siMorpho [ 84%] Built target siMultilabelCompare [ 84%] Built target siRelax [ 84%] Built target siPIDcommand [ 84%] Built target siRevert [ 84%] Built target siPutTextureInModel done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' [autosummary] generating autosummary for: ana_notebook.ipynb, auto_examples/activateaction.rst, auto_examples/addMenuEntry.rst, auto_examples/aimsvolumetest.rst, auto_examples/anaevensimplerviewer.rst, auto_examples/anagraphannotate.rst, auto_examples/anatomistapiTests.rst, auto_examples/bvProcessSocket.rst, auto_examples/control.rst, auto_examples/customcommands.rst, ..., pyanatomist_headless.rst, pyanatomist_howto.rst, pyanatomist_notebook.rst, pyanatomist_pyaims_tutorial.rst, pyanatomist_socket.rst, pyanatomist_threaded.rst, pyanatomist_tutorial.rst, pyanatomist_tutorial_nb.ipynb, pyanatomist_wip.rst, sg_execution_times.rst [ 84%] Built target siTriangModel [ 84%] Built target siTestModels [ 84%] Built target siSulcalParcellation [ 84%] Built target siTryGauss [ 84%] Built target AimsBorderGenerate [ 84%] Built target AimsAdaptiveSelVoxel [ 84%] Built target AimsAxialProjection [ 84%] Built target biodpy [ 84%] Built target AimsCenterSlices [ 84%] Built target AimsBorderInfo [ 84%] Built target AimsFeaturesExtraction [ 84%] Built target AimsFovAdapt [ 84%] Built target AimsGL2Activity [ 84%] Built target AimsIndividStackSlices [ 84%] Built target AimsInterSliceNormalize [ 84%] Built target AimsManualRegistration [ 84%] Built target bioModelClassify [ 84%] Built target bioDetectSlices [ 84%] Built target bioModelGenerate [ 84%] Built target AimsMidPlaneAlign [ 84%] Built target AimsRegisterQNEstimate [ 84%] Built target bioprocessing [ 84%] Built target AimsSelectGradPoints [ 84%] Built target AimsSegmentationEM [ 84%] Built target constelBundlesFiltering [ 84%] Built target bioKMeans [ 84%] Built target AimsSparseMatrixSmoothing [ 84%] Built target constelConnectionDensityTexture [ 84%] Built target constelFibersLengths [ 84%] Built target constelSelectBundlesFromNames [ 84%] Built target constelMeanConnectivityProfileFromMatrix [ 84%] Built target constelConnectivityMatrix [ 84%] Built target constelSelectFibersFromMesh [ 88%] Built target AimsGyriStuff [ 88%] Built target AimsConstraintCleaner [ 88%] Built target AimsCorticalReferential [ 88%] Built target AimsCorticalThickness [ 88%] Built target AimsMeshMedianSurface [ 88%] Built target AimsMeshIsoLine [ 88%] Built target AimsFunctionProjection Process2 execution, a: 0.000000, b: blop [ 92%] Built target AimsCoordinatesToTexture [ 92%] Built target AimsCoordinatesTextureToMesh [ 92%] Built target AimsCoordinateGridMesh [ 92%] Built target AimsFlattenCortex Consolidate compiler generated dependencies of target AimsParameterizeSulcus [ 92%] Built target AimsParameterizeGyri [ 92%] Built target AimsPlotOnSPhericalAtlas [ 92%] Built target AimsParameterizeSulcus [ 92%] Built target AimsSulcusCorticalSnake [ 92%] Built target AimsTextureToAtlas [ 92%] Built target surfTexActivationSimulation Failed to import anatomist.altas_viewer. Possible hints: * AttributeError: module 'anatomist' has no attribute 'altas_viewer' * ModuleNotFoundError: No module named 'anatomist.altas_viewer' generating gallery... [ 92%] Built target surfStructuralAnalysis [ 92%] Built target AimsCheck2DCoordinates Consolidate compiler generated dependencies of target AimsMeshCoordinatesToDecimated [ 92%] Built target AimsMeshToAtlas generating gallery for auto_examples... [ 4%] volumetest.py [ 92%] Built target AimsSulcusNormalizeDepthProfile generating gallery for auto_examples... [ 8%] nomenclatureselection.py [ 92%] Built target AimsConformalMapping generating gallery for auto_examples... [ 13%] graph.py generating gallery for auto_examples... [ 17%] events.py generating gallery for auto_examples... [ 21%] customcommands.py generating gallery for auto_examples... [ 26%] addMenuEntry.py [ 92%] Built target AimsMeshCoordinatesToDecimated generating gallery for auto_examples... [ 30%] fusion3D.py generating gallery for auto_examples... [ 34%] selection.py generating gallery for auto_examples... [ 39%] activateaction.py generating gallery for auto_examples... [ 43%] graph_building.py generating gallery for auto_examples... [ 47%] bvProcessSocket.py generating gallery for auto_examples... [ 52%] aimsvolumetest.py generating gallery for auto_examples... [ 56%] meshtest.py generating gallery for auto_examples... [ 60%] sphere.py generating gallery for auto_examples... [ 65%] fusion.py [ 92%] Built target AimsExtractGyrus Consolidate compiler generated dependencies of target PlotFociForValidation [ 92%] Built target AimsMeshToMeshPoint generating gallery for auto_examples... [ 69%] ellipsoid.py [ 92%] Built target AimsPlotCoordinatesOnMesh generating gallery for auto_examples... [ 73%] control.py generating gallery for auto_examples... [ 78%] anagraphannotate.py generating gallery for auto_examples... [ 82%] customopenglobject.py generating gallery for auto_examples... [ 86%] volumeMeasures.py generating gallery for auto_examples... [ 91%] anaevensimplerviewer.py [ 92%] Built target PlotFociForValidation generating gallery for auto_examples... [ 95%] texturedrawing.py Consolidate compiler generated dependencies of target AimsGyriRegularization generating gallery for auto_examples... [100%] anatomistapiTests.py [ 92%] Built target AimsCoordinatesToIndex [ 92%] Built target AimsGroupGyri /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:47,864::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'. [ 92%] Built target AimsGyriRegularization computation time summary: - ../examples/activateaction.py: 0.00 sec 0.0 MB - ../examples/addMenuEntry.py: 0.00 sec 0.0 MB - ../examples/aimsvolumetest.py: 0.00 sec 0.0 MB - ../examples/anaevensimplerviewer.py: 0.00 sec 0.0 MB - ../examples/anagraphannotate.py: 0.00 sec 0.0 MB - ../examples/anatomistapiTests.py: 0.00 sec 0.0 MB - ../examples/bvProcessSocket.py: 0.00 sec 0.0 MB - ../examples/control.py: 0.00 sec 0.0 MB - ../examples/customcommands.py: 0.00 sec 0.0 MB - ../examples/customopenglobject.py: 0.00 sec 0.0 MB - ../examples/ellipsoid.py: 0.00 sec 0.0 MB - ../examples/events.py: 0.00 sec 0.0 MB - ../examples/fusion.py: 0.00 sec 0.0 MB - ../examples/fusion3D.py: 0.00 sec 0.0 MB - ../examples/graph.py: 0.00 sec 0.0 MB - ../examples/graph_building.py: 0.00 sec 0.0 MB - ../examples/meshtest.py: 0.00 sec 0.0 MB - ../examples/nomenclatureselection.py: 0.00 sec 0.0 MB - ../examples/selection.py: 0.00 sec 0.0 MB - ../examples/sphere.py: 0.00 sec 0.0 MB [ 92%] Built target AimsGeodesicPath - ../examples/texturedrawing.py: 0.00 sec 0.0 MB - ../examples/volumeMeasures.py: 0.00 sec 0.0 MB - ../examples/volumetest.py: 0.00 sec 0.0 MB building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 0 source files that are out of date updating environment: [ 92%] Built target AimsInterpolateVolumeToSurface [ 92%] Built target AimsSulcalLines [ 92%] Built target AimsTextureCompare 0 added, 1 changed, 0 removed reading sources... [100%] pyanatomist_addons [ 92%] Built target AimsExactDepthArea [ 92%] Built target morphologist-ui-doc [ 92%] Generating ../../../../share/doc/aimsalgo-5.2/doxygen/index.html [ 92%] Built target aimsgui-doxygen [ 92%] Built target pyaims-doxygen [ 92%] Built target AimsReadDpy [ 92%] Built target anatomist-bin warning: Tag 'DETAILS_AT_TOP' at line 162 of file '/casa/host/build/build_files/aims-free/aimsalgo/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 408 of file '/casa/host/build/build_files/aims-free/aimsalgo/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 653 of file '/casa/host/build/build_files/aims-free/aimsalgo/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 708 of file '/casa/host/build/build_files/aims-free/aimsalgo/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 948 of file '/casa/host/build/build_files/aims-free/aimsalgo/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 954 of file '/casa/host/build/build_files/aims-free/aimsalgo/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1115 of file '/casa/host/build/build_files/aims-free/aimsalgo/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1136 of file '/casa/host/build/build_files/aims-free/aimsalgo/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! [ 92%] Built target bioReadDpy [ 92%] Built target AimsAmyloidDensity [ 92%] Built target AimsAffineRegister Doxygen version used: 1.9.1 Searching for include files... Searching for files in directory /casa/host/build/include Searching for files in directory /casa/host/build/include/aims Searching for files in directory /casa/host/build/include/aims/algorithm Searching for files in directory /casa/host/build/include/aims/attributedview Searching for files in directory /casa/host/build/include/aims/border Searching for files in directory /casa/host/build/include/aims/bucket Searching for files in directory /casa/host/build/include/aims/classification Searching for files in directory /casa/host/build/include/aims/color Searching for files in directory /casa/host/build/include/aims/compression Searching for files in directory /casa/host/build/include/aims/config Searching for files in directory /casa/host/build/include/aims/connectivity Searching for files in directory /casa/host/build/include/aims/curve Searching for files in directory /casa/host/build/include/aims/data Searching for files in directory /casa/host/build/include/aims/def Searching for files in directory /casa/host/build/include/aims/distancemap Searching for files in directory /casa/host/build/include/aims/doc Searching for files in directory /casa/host/build/include/aims/estimation Searching for files in directory /casa/host/build/include/aims/fastComputation Searching for files in directory /casa/host/build/include/aims/features Searching for files in directory /casa/host/build/include/aims/ffd Searching for files in directory /casa/host/build/include/aims/fibers Searching for files in directory /casa/host/build/include/aims/foldgraph Searching for files in directory /casa/host/build/include/aims/geodesicpath Searching for files in directory /casa/host/build/include/aims/getopt Searching for files in directory /casa/host/build/include/aims/graph Searching for files in directory /casa/host/build/include/aims/histogram Searching for files in directory /casa/host/build/include/aims/hsv Searching for files in directory /casa/host/build/include/aims/information Searching for files in directory /casa/host/build/include/aims/interpolation Searching for files in directory /casa/host/build/include/aims/io Searching for files in directory /casa/host/build/include/aims/io/gifticlib Searching for files in directory /casa/host/build/include/aims/io_soma Searching for files in directory /casa/host/build/include/aims/listview Searching for files in directory /casa/host/build/include/aims/math Searching for files in directory /casa/host/build/include/aims/memmap Searching for files in directory /casa/host/build/include/aims/mesh Searching for files in directory /casa/host/build/include/aims/meshprojection Searching for files in directory /casa/host/build/include/aims/moment Searching for files in directory /casa/host/build/include/aims/morphology Searching for files in directory /casa/host/build/include/aims/mpi Searching for files in directory /casa/host/build/include/aims/optimization Searching for files in directory /casa/host/build/include/aims/plugin Searching for files in directory /casa/host/build/include/aims/points_distribution Searching for files in directory /casa/host/build/include/aims/primalsketch Searching for files in directory /casa/host/build/include/aims/pyramid Searching for files in directory /casa/host/build/include/aims/qtmisc Searching for files in directory /casa/host/build/include/aims/registration Searching for files in directory /casa/host/build/include/aims/resampling Searching for files in directory /casa/host/build/include/aims/rgb Searching for files in directory /casa/host/build/include/aims/roi Searching for files in directory /casa/host/build/include/aims/rply Searching for files in directory /casa/host/build/include/aims/scalespace Searching for files in directory /casa/host/build/include/aims/selection Searching for files in directory /casa/host/build/include/aims/signalfilter Searching for files in directory /casa/host/build/include/aims/sino Searching for files in directory /casa/host/build/include/aims/spam Searching for files in directory[ 92%] Built target AimsAmyloidLoadAvgDistNeigh [ 92%] Built target AimsAmyloidLoadInvSurfVor /casa/host/build/include/aims/sparsematrix Searching for files in directory /casa/host/build/include/aims/talairach Searching for files in directory /casa/host/build/include/aims/texdata Searching for files in directory /casa/host/build/include/aims/threshold Searching for files in directory /casa/host/build/include/aims/topology Searching for files in directory /casa/host/build/include/aims/transform Searching for files in directory /casa/host/build/include/aims/transformation Searching for files in directory /casa/host/build/include/aims/utility Searching for files in directory /casa/host/build/include/aims/vector Searching for files in directory /casa/host/build/include/anafold Searching for files in directory /casa/host/build/include/anafold/fgraph Searching for files in directory /casa/host/build/include/anafold/module Searching for files in directory /casa/host/build/include/anatomist Searching for files in directory /casa/host/build/include/anatomist/action Searching for files in directory /casa/host/build/include/anatomist/application Searching for files in directory /casa/host/build/include/anatomist/browser Searching for files in directory /casa/host/build/include/anatomist/bucket Searching for files in directory /casa/host/build/include/anatomist/color Searching for files in directory /casa/host/build/include/anatomist/commands Searching for files in directory /casa/host/build/include/anatomist/config Searching for files in directory /casa/host/build/include/anatomist/constrainteditor Searching for files in directory /casa/host/build/include/anatomist/control Searching for files in directory /casa/host/build/include/anatomist/controler Searching for files in directory /casa/host/build/include/anatomist/dialogs Searching for files in directory /casa/host/build/include/anatomist/erpio Searching for files in directory /casa/host/build/include/anatomist/fusion Searching for files in directory /casa/host/build/include/anatomist/gradientwidget Searching for files in directory /casa/host/build/include/anatomist/graph Searching for files in directory /casa/host/build/include/anatomist/hierarchy Searching for files in directory /casa/host/build/include/anatomist/interface Searching for files in directory /casa/host/build/include/anatomist/interpoler Searching for files in directory /casa/host/build/include/anatomist/landmark Searching for files in directory /casa/host/build/include/anatomist/misc Searching for files in directory /casa/host/build/include/anatomist/mobject Searching for files in directory /casa/host/build/include/anatomist/module Searching for files in directory /casa/host/build/include/anatomist/object Searching for files in directory /casa/host/build/include/anatomist/observer Searching for files in directory /casa/host/build/include/anatomist/primitive Searching for files in directory /casa/host/build/include/anatomist/processor Searching for files in directory /casa/host/build/include/anatomist/qtvr3 Searching for files in directory /casa/host/build/include/anatomist/reference Searching for files in directory /casa/host/build/include/anatomist/selection Searching for files in directory /casa/host/build/include/anatomist/sparsematrix Searching for files in directory /casa/host/build/include/anatomist/stdmod Searching for files in directory /casa/host/build/include/anatomist/surface Searching for files in directory /casa/host/build/include/anatomist/surfmatcher Searching for files in directory /casa/host/build/include/anatomist/ui Searching for files in directory /casa/host/build/include/anatomist/volume Searching for files in directory /casa/host/build/include/anatomist/window Searching for files in directory /casa/host/build/include/anatomist/window3D Searching for files in directory /casa/host/build/include/anatomist/winhisto Searching for files in directory /casa/host/build/include/anatomist/winprof Searching for files in directory /casa/host/build/include/bioprocessing Searching for files in directory /casa/host/build/include/bioprocessing/classification Searching for files in directory /casa/hos[ 92%] Built target AimsAmyloidDetection [ 92%] Built target AimsAmyloidFiltering t/build/include/bioprocessing/data Searching for files in directory /casa/host/build/include/bioprocessing/graph Searching for files in directory /casa/host/build/include/bioprocessing/utility Searching for files in directory /casa/host/build/include/bioprocessing/watershed Searching for files in directory /casa/host/build/include/brainrat Searching for files in directory /casa/host/build/include/brainrat/classification Searching for files in directory /casa/host/build/include/brainrat/data Searching for files in directory /casa/host/build/include/brainrat/exception Searching for files in directory /casa/host/build/include/brainrat/io Searching for files in directory /casa/host/build/include/brainrat/morphology Searching for files in directory /casa/host/build/include/brainrat/object Searching for files in directory /casa/host/build/include/brainrat/overlap Searching for files in directory /casa/host/build/include/brainrat/plugin Searching for files in directory /casa/host/build/include/brainrat/utility Searching for files in directory /casa/host/build/include/brainvisa-share Searching for files in directory /casa/host/build/include/cartobase Searching for files in directory /casa/host/build/include/cartobase/algorithm Searching for files in directory /casa/host/build/include/cartobase/allocator Searching for files in directory /casa/host/build/include/cartobase/config Searching for files in directory /casa/host/build/include/cartobase/containers Searching for files in directory /casa/host/build/include/cartobase/datasource Searching for files in directory /casa/host/build/include/cartobase/doc Searching for files in directory /casa/host/build/include/cartobase/exception Searching for files in directory /casa/host/build/include/cartobase/getopt Searching for files in directory /casa/host/build/include/cartobase/io Searching for files in directory /casa/host/build/include/cartobase/object Searching for files in directory /casa/host/build/include/cartobase/pattern Searching for files in directory /casa/host/build/include/cartobase/plugin Searching for files in directory /casa/host/build/include/cartobase/sigc++ Searching for files in directory /casa/host/build/include/cartobase/smart Searching for files in directory /casa/host/build/include/cartobase/stream Searching for files in directory /casa/host/build/include/cartobase/thread Searching for files in directory /casa/host/build/include/cartobase/type Searching for files in directory /casa/host/build/include/cartobase/uuid Searching for files in directory /casa/host/build/include/cartobase/zoolib Searching for files in directory /casa/host/build/include/cartodata Searching for files in directory /casa/host/build/include/cartodata/config Searching for files in directory /casa/host/build/include/cartodata/doc Searching for files in directory /casa/host/build/include/cartodata/io Searching for files in directory /casa/host/build/include/cartodata/plugin Searching for files in directory /casa/host/build/include/cartodata/transformation Searching for files in directory /casa/host/build/include/cartodata/volume Searching for files in directory /casa/host/build/include/cartodata/wip Searching for files in directory /casa/host/build/include/cartodata/wip/roi Searching for files in directory /casa/host/build/include/constellation Searching for files in directory /casa/host/build/include/cortical_surface Searching for files in directory /casa/host/build/include/cortical_surface/mesh Searching for files in directory /casa/host/build/include/cortical_surface/structuralanalysis Searching for files in directory /casa/host/build/include/cortical_surface/surfacereferential Searching for files in directory /casa/host/build/include/cortical_surface/surfacereferential/gyri Searching for files in directory /casa/host/build/include/ecat Searching for files in directory /casa/host/build/include/ecat/kernel Searching for files in directory /casa/host/build/include/ecat/lib_compress Searching for files in directory /casa/host/build/include/ecat+ Searching for files in directory /casa/host/build/[ 92%] Built target AimsAmyloidMRIDetection [ 92%] Built target AimsAreaNbConnectCompRatio include/ecat+/io Searching for files in directory /casa/host/build/include/graph Searching for files in directory /casa/host/build/include/graph/config Searching for files in directory /casa/host/build/include/graph/doc Searching for files in directory /casa/host/build/include/graph/graph Searching for files in directory /casa/host/build/include/graph/io Searching for files in directory /casa/host/build/include/graph/tree Searching for files in directory /casa/host/build/include/highres-cortex Searching for files in directory /casa/host/build/include/kdtree++ Searching for files in directory /casa/host/build/include/neur Searching for files in directory /casa/host/build/include/neur/gauss Searching for files in directory /casa/host/build/include/neur/koho Searching for files in directory /casa/host/build/include/neur/mlp Searching for files in directory /casa/host/build/include/neur/rand Searching for files in directory /casa/host/build/include/neur/stream Searching for files in directory /casa/host/build/include/primatologist Searching for files in directory /casa/host/build/include/primatologist/math Searching for files in directory /casa/host/build/include/primatologist/optimization Searching for files in directory /casa/host/build/include/primatologist/proba Searching for files in directory /casa/host/build/include/primatologist/utility Searching for files in directory /casa/host/build/include/pyaims Searching for files in directory /casa/host/build/include/pyaims/data Searching for files in directory /casa/host/build/include/pyaims/debugging Searching for files in directory /casa/host/build/include/pyaims/object Searching for files in directory /casa/host/build/include/pyaims/plugin Searching for files in directory /casa/host/build/include/pyaims/vector Searching for files in directory /casa/host/build/include/pyanatomist Searching for files in directory /casa/host/build/include/pyanatomist/module Searching for files in directory /casa/host/build/include/pysigraph Searching for files in directory /casa/host/build/include/si Searching for files in directory /casa/host/build/include/si/descr Searching for files in directory /casa/host/build/include/si/dimreductor Searching for files in directory /casa/host/build/include/si/domain Searching for files in directory /casa/host/build/include/si/finder Searching for files in directory /casa/host/build/include/si/fold Searching for files in directory /casa/host/build/include/si/functionalsketch Searching for files in directory /casa/host/build/include/si/global Searching for files in directory /casa/host/build/include/si/graph Searching for files in directory /casa/host/build/include/si/gyrus Searching for files in directory /casa/host/build/include/si/learnable Searching for files in directory /casa/host/build/include/si/learner Searching for files in directory /casa/host/build/include/si/mixer Searching for files in directory /casa/host/build/include/si/model Searching for files in directory /casa/host/build/include/si/optimizer Searching for files in directory /casa/host/build/include/si/plugin Searching for files in directory /casa/host/build/include/si/roi Searching for files in directory /casa/host/build/include/si/sisvm Searching for files in directory /casa/host/build/include/si/subadaptive Searching for files in directory /casa/host/build/include/si/sulcalsketch Searching for files in directory /casa/host/build/include/si/sulcalSketch_Arnaud Searching for files in directory /casa/host/build/include/soma-io Searching for files in directory /casa/host/build/include/soma-io/allocator Searching for files in directory /casa/host/build/include/soma-io/checker Searching for files in directory /casa/host/build/include/soma-io/Color Searching for files in directory /casa/host/build/include/soma-io/config Searching for files in directory /casa/host/build/include/soma-io/Container Searching for files in directory /casa/host/build/include/soma-io/datasource Searching for files in directory /casa/host/build/include/soma-io/datasourceinfo Searching for files in directory /casa/ho[ 92%] Built target AimsBinaryBoundingBox [ 92%] Built target AimsBorderCrop st/build/include/soma-io/Dicom Searching for files in directory /casa/host/build/include/soma-io/Dicom/Bruker Searching for files in directory /casa/host/build/include/soma-io/Dicom/DcmtkJpeg2000 Searching for files in directory /casa/host/build/include/soma-io/Dicom/GE Searching for files in directory /casa/host/build/include/soma-io/Dicom/Philips Searching for files in directory /casa/host/build/include/soma-io/Dicom/Siemens Searching for files in directory /casa/host/build/include/soma-io/doc Searching for files in directory /casa/host/build/include/soma-io/getopt Searching for files in directory /casa/host/build/include/soma-io/image Searching for files in directory /casa/host/build/include/soma-io/io Searching for files in directory /casa/host/build/include/soma-io/nifticlib Searching for files in directory /casa/host/build/include/soma-io/nifticlib/niftilib Searching for files in directory /casa/host/build/include/soma-io/nifticlib/znzlib Searching for files in directory /casa/host/build/include/soma-io/Object Searching for files in directory /casa/host/build/include/soma-io/Pattern Searching for files in directory /casa/host/build/include/soma-io/plugin Searching for files in directory /casa/host/build/include/soma-io/reader Searching for files in directory /casa/host/build/include/soma-io/System Searching for files in directory /casa/host/build/include/soma-io/transformation Searching for files in directory /casa/host/build/include/soma-io/Transformation Searching for files in directory /casa/host/build/include/soma-io/utilities Searching for files in directory /casa/host/build/include/soma-io/Utils Searching for files in directory /casa/host/build/include/soma-io/vector Searching for files in directory /casa/host/build/include/soma-io/writer Searching for files in directory /casa/host/build/include/vidaIO Searching for files in directory /casa/host/build/include/vidaIO/kernel Searching for files in directory /casa/host/build/include/vip Searching for files in directory /casa/host/build/include/vip/alloc Searching for files in directory /casa/host/build/include/vip/bucket Searching for files in directory /casa/host/build/include/vip/connex Searching for files in directory /casa/host/build/include/vip/cylinder Searching for files in directory /casa/host/build/include/vip/deriche Searching for files in directory /casa/host/build/include/vip/eigen Searching for files in directory /casa/host/build/include/vip/epidistorsion Searching for files in directory /casa/host/build/include/vip/fold_arg Searching for files in directory /casa/host/build/include/vip/geometry Searching for files in directory /casa/host/build/include/vip/histo Searching for files in directory /casa/host/build/include/vip/linresamp Searching for files in directory /casa/host/build/include/vip/matching Searching for files in directory /casa/host/build/include/vip/math Searching for files in directory /casa/host/build/include/vip/nomen Searching for files in directory /casa/host/build/include/vip/object Searching for files in directory /casa/host/build/include/vip/pca Searching for files in directory /casa/host/build/include/vip/pvec Searching for files in directory /casa/host/build/include/vip/skeleton Searching for files in directory /casa/host/build/include/vip/splineresamp Searching for files in directory /casa/host/build/include/vip/spm Searching for files in directory /casa/host/build/include/vip/TivoliIO Searching for files in directory /casa/host/build/include/vip/topology Searching for files in directory /casa/host/build/include/vip/transform Searching for files in directory /casa/host/build/include/vip/util Searching for files in directory /casa/host/build/include/vip/vcomplex Searching for files in directory /casa/host/build/include/vip/volume Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Reading formula repository... Reading and parsing tag files Reading tag file '/casa/host/build/[ 92%] Built target AimsBorderLineProj [ 92%] Built target AimsBinaryBorder [ 92%] Built target AimsBoundingBoxCalculation [ 92%] Built target AimsComponentFeaturesProcess [ 92%] Built target AimsBoundingBoxExtraction [ 92%] Built target AimsComponentFeaturesVisualize [ 92%] Built target AimsComponentFeaturesMapGenerate [ 92%] Built target AimsCorrectImages [ 92%] Built target AimsCreateFieldsFromMotion [ 92%] Built target AimsChannelProcess [ 92%] Built target AimsEntropicThresholding [ 92%] Built target AimsFovCentering [ 92%] Built target AimsEqualizer [ 92%] Built target AimsGenerateVolume share/doc/aimsdata-5.2/doxygen/aimsdata.tag', location '../../aimsdata-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/graph-5.2/doxygen/graph.tag', location '../../graph-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag', location '../../cartobase-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/soma-io-5.2/doxygen/soma-io.tag', location '../../soma-io-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/cartodata-5.2/doxygen/cartodata.tag', location '../../cartodata-5.2/doxygen'... Parsing files Preprocessing /casa/host/build/include/aims/algorithm/imagealgorithm.h... Parsing file /casa/host/build/include/aims/algorithm/imagealgorithm.h... Preprocessing /casa/host/build/include/aims/classification/individuals.h... Parsing file /casa/host/build/include/aims/classification/individuals.h... Preprocessing /casa/host/build/include/aims/classification/individuals_d.h... Parsing file /casa/host/build/include/aims/classification/individuals_d.h... Preprocessing /casa/host/build/include/aims/classification/classifstrategy_d.h... Parsing file /casa/host/build/include/aims/classification/classifstrategy_d.h... Preprocessing /casa/host/build/include/aims/classification/classifstrategy.h... Parsing file /casa/host/build/include/aims/classification/classifstrategy.h... Preprocessing /casa/host/build/include/aims/classification/distance.h... Parsing file /casa/host/build/include/aims/classification/distance.h... Preprocessing /casa/host/build/include/aims/classification/distance_d.h... Parsing file /casa/host/build/include/aims/classification/distance_d.h... Preprocessing /casa/host/build/include/aims/classification/dynamicstrategy.h... Parsing file /casa/host/build/include/aims/classification/dynamicstrategy.h... Preprocessing /casa/host/build/include/aims/classification/dynamicstrategy_d.h... Parsing file /casa/host/build/include/aims/classification/dynamicstrategy_d.h... Preprocessing /casa/host/build/include/aims/classification/iterativeclassification.h... Parsing file /casa/host/build/include/aims/classification/iterativeclassification.h... Preprocessing /casa/host/build/include/aims/classification/iterativeclassification_d.h... Parsing file /casa/host/build/include/aims/classification/iterativeclassification_d.h... Preprocessing /casa/host/build/include/aims/classification/kmeansstrategy.h... Parsing file /casa/host/build/include/aims/classification/kmeansstrategy.h... Preprocessing /casa/host/build/include/aims/classification/kmeansstrategy_d.h... Parsing file /casa/host/build/include/aims/classification/kmeansstrategy_d.h... Preprocessing /casa/host/build/include/aims/classification/mixtureOfPpca.h... Parsing file /casa/host/build/include/aims/classification/mixtureOfPpca.h... Preprocessing /casa/host/build/include/aims/classification/mixtureOfPpca_d.h... Parsing file /casa/host/build/include/aims/classification/mixtureOfPpca_d.h... Preprocessing /casa/host/build/include/aims/classification/pcastrategy.h... Parsing file /casa/host/build/include/aims/classification/pcastrategy.h... Preprocessing /casa/host/build/include/aims/classification/pcastrategy_d.h... Parsing file /casa/host/build/include/aims/classification/pcastrategy_d.h... Preprocessing /casa/host/build/include/aims/classification/softDecSimilarityCompAnalysis.h... Parsing file /casa/host/build/include/aims/classification/softDecSimilarityCompAnalysis.h... Preprocessing /casa/host/build/include/aims/compression/compression_g.h... Parsing file /casa/host/build/include/aims/compression/compression_g.h... Preprocessing /casa/host/build/include/aims/compression/huffman.h... Parsing file /casa/host/build/include/aims/compression/huffman.h... Preprocessing /casa/host/build/include/aims/compression/lz.h... Parsing file /casa/host/build/include/aims/compression/lz.h... Preprocessing /casa/host/build/include/aims/compression/lzhl.h... Parsing file /casa/host/build/include/aims/compression/lzhl.h... Preprocessing /casa/host/build/include/aims/config/aimsalgo_config.h... Parsing file /casa/host/bui WARNING: multiple files found for the document "auto_examples/activateaction": ['auto_examples/activateaction.codeobj.json', 'auto_examples/activateaction.rst', 'auto_examples/activateaction.py', 'auto_examples/activateaction.zip', 'auto_examples/activateaction.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/activateaction.rst' for the build. WARNING: multiple files found for the document "auto_examples/addMenuEntry": ['auto_examples/addMenuEntry.rst', 'auto_examples/addMenuEntry.zip', 'auto_examples/addMenuEntry.codeobj.json', 'auto_examples/addMenuEntry.ipynb', 'auto_examples/addMenuEntry.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/addMenuEntry.rst' for the build. WARNING: multiple files found for the document "auto_examples/aimsvolumetest": ['auto_examples/aimsvolumetest.rst', 'auto_examples/aimsvolumetest.ipynb', 'auto_examples/aimsvolumetest.py', 'auto_examples/aimsvolumetest.py.md5'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/aimsvolumetest.rst' for the build. WARNING: multiple files found for the document "auto_examples/anaevensimplerviewer": ['auto_examples/anaevensimplerviewer.ipynb', 'auto_examples/anaevensimplerviewer.rst', 'auto_examples/anaevensimplerviewer.py.md5', 'auto_examples/anaevensimplerviewer.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/anaevensimplerviewer.rst' for the build. WARNING: multiple files found for the document "auto_examples/anagraphannotate": ['auto_examples/anagraphannotate.ipynb', 'auto_examples/anagraphannotate.rst', 'auto_examples/anagraphannotate.py', 'auto_examples/anagraphannotate.py.md5'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/anagraphannotate.rst' for the build. WARNING: multiple files found for the document "auto_examples/anatomistapiTests": ['auto_examples/anatomistapiTests.py', 'auto_examples/anatomistapiTests.ipynb', 'auto_examples/anatomistapiTests.zip', 'auto_examples/anatomistapiTests.codeobj.json', 'auto_examples/anatomistapiTests.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/anatomistapiTests.rst' for the build. WARNING: multiple files found for the document "auto_examples/bvProcessSocket": ['auto_examples/bvProcessSocket.rst', 'auto_examples/bvProcessSocket.ipynb', 'auto_examples/bvProcessSocket.zip', 'auto_examples/bvProcessSocket.codeobj.json', 'auto_examples/bvProcessSocket.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/bvProcessSocket.rst' for the build. WARNING: multiple files found for the document "auto_examples/control": ['auto_examples/control.py.md5', 'auto_examples/control.ipynb', 'auto_examples/control.xpm', 'auto_examples/control.py', 'auto_examples/control.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/control.rst' for the build. WARNING: multiple files found for the document "auto_examples/customcommands": ['auto_examples/customcommands.rst', 'auto_examples/customcommands.codeobj.json', 'auto_examples/customcommands.py', 'auto_examples/customcommands.ipynb', 'auto_examples/customcommands.zip'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/customcommands.rst' for the build. WARNING: multiple files found for the document "auto_examples/customopenglobject": ['auto_examples/customopenglobject.rst', 'auto_examples/customopenglobject.py.md5', 'auto_examples/customopenglobject.ipynb', 'auto_examples/customopenglobject.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/customopenglobject.rst' for the build. WARNING: multiple files found for the document "auto_examples/ellipsoid": ['auto_examples/ellipsoid.ipynb', 'auto_examples/ellipsoid.rst', 'auto_examples/ellipsoid.py', 'auto_examples/ellipsoid.py.md5'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/ellipsoid.rst' for the build. WARNING: multiple files found for the document "auto_examples/events": ['auto_examples/events.py', 'auto_examples/events.zip', 'auto_examples/events.codeobj.json', 'auto_examples/events.ipynb', 'auto_examples/events.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/events.rst' for the build. WARNING: multiple files found for the document "auto_examples/fusion": ['auto_examples/fusion.ipynb', 'auto_examples/fusion.rst', 'auto_examples/fusion.py', 'auto_examples/fusion.codeobj.json', 'auto_examples/fusion.zip'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/fusion.rst' for the build. WARNING: multiple files found for the document "auto_examples/fusion3D": ['auto_examples/fusion3D.ipynb', 'auto_examples/fusion3D.py.md5', 'auto_examples/fusion3D.py', 'auto_examples/fusion3D.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/fusion3D.rst' for the build. WARNING: multiple files found for the document "auto_examples/graph": ['auto_examples/graph.ipynb', 'auto_examples/graph.py', 'auto_examples/graph.py.md5', 'auto_examples/graph.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/graph.rst' for the build. WARNING: multiple files found for the document "auto_examples/graph_building": ['auto_examples/graph_building.ipynb', 'auto_examples/graph_building.py', 'auto_examples/graph_building.py.md5', 'auto_examples/graph_building.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/graph_building.rst' for the build. WARNING: multiple files found for the document "auto_examples/meshtest": ['auto_examples/meshtest.py', 'auto_examples/meshtest.rst', 'auto_examples/meshtest.py.md5', 'auto_examples/meshtest.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/meshtest.rst' for the build. WARNING: multiple files found for the document "auto_examples/nomenclatureselection": ['auto_examples/nomenclatureselection.rst', 'auto_examples/nomenclatureselection.py.md5', 'auto_examples/nomenclatureselection.py', 'auto_examples/nomenclatureselection.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/nomenclatureselection.rst' for the build. WARNING: multiple files found for the document "auto_examples/selection": ['auto_examples/selection.rst', 'auto_examples/selection.py.md5', 'auto_examples/selection.ipynb', 'auto_examples/selection.py'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/selection.rst' for the build. WARNING: multiple files found for the document "auto_examples/sphere": ['auto_examples/sphere.zip', 'auto_examples/sphere.py', 'auto_examples/sphere.ipynb', 'auto_examples/sphere.codeobj.json', 'auto_examples/sphere.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/sphere.rst' for the build. WARNING: multiple files found for the document "auto_examples/texturedrawing": ['auto_examples/texturedrawing.py', 'auto_examples/texturedrawing.ipynb', 'auto_examples/texturedrawing.codeobj.json', 'auto_examples/texturedrawing.zip', 'auto_examples/texturedrawing.rst'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/texturedrawing.rst' for the build. WARNING: multiple files found for the document "auto_examples/volumeMeasures": ['auto_examples/volumeMeasures.ipynb', 'auto_examples/volumeMeasures.py', 'auto_examples/volumeMeasures.codeobj.json', 'auto_examples/volumeMeasures.rst', 'auto_examples/volumeMeasures.zip'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/volumeMeasures.rst' for the build. WARNING: multiple files found for the document "auto_examples/volumetest": ['auto_examples/volumetest.py.md5', 'auto_examples/volumetest.py', 'auto_examples/volumetest.rst', 'auto_examples/volumetest.ipynb'] Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/volumetest.rst' for the build. /casa/host/build/python/anatomist/cpp/followerobject.py:docstring of anatomist.cpp.followerobject:6: WARNING: Inline literal start-string without end-string. WARNING: autodoc: failed to import module 'altas_viewer' from module 'anatomist'; the following exception was raised: No module named 'anatomist.altas_viewer' looking for now-outdated files... none found pickling environment... [ 92%] Built target AimsGridGenerate [ 92%] Built target AimsGridCalibrate [ 92%] Built target axon-sphinx [ 92%] Built target AimsHeightFiltering ld/include/aims/config/aimsalgo_config.h... Preprocessing /casa/host/build/include/aims/connectivity/meshcc.h... Parsing file /casa/host/build/include/aims/connectivity/meshcc.h... Preprocessing /casa/host/build/include/aims/connectivity/meshcc_d.h... Parsing file /casa/host/build/include/aims/connectivity/meshcc_d.h... Preprocessing /casa/host/build/include/aims/distancemap/advection.h... Parsing file /casa/host/build/include/aims/distancemap/advection.h... Preprocessing /casa/host/build/include/aims/distancemap/distancemap_g.h... Parsing file /casa/host/build/include/aims/distancemap/distancemap_g.h... Preprocessing /casa/host/build/include/aims/distancemap/chamfer.h... Parsing file /casa/host/build/include/aims/distancemap/chamfer.h... Preprocessing /casa/host/build/include/aims/distancemap/danielsson.h... Parsing file /casa/host/build/include/aims/distancemap/danielsson.h... Preprocessing /casa/host/build/include/aims/distancemap/downpath.h... Parsing file /casa/host/build/include/aims/distancemap/downpath.h... Preprocessing /casa/host/build/include/aims/distancemap/fastmarching.h... Parsing file /casa/host/build/include/aims/distancemap/fastmarching.h... Preprocessing /casa/host/build/include/aims/distancemap/front.h... Parsing file /casa/host/build/include/aims/distancemap/front.h... Preprocessing /casa/host/build/include/aims/distancemap/mask.h... Parsing file /casa/host/build/include/aims/distancemap/mask.h... Preprocessing /casa/host/build/include/aims/distancemap/meshdistance.h... Parsing file /casa/host/build/include/aims/distancemap/meshdistance.h... Preprocessing /casa/host/build/include/aims/distancemap/meshdistance_d.h... Parsing file /casa/host/build/include/aims/distancemap/meshdistance_d.h... Preprocessing /casa/host/build/include/aims/distancemap/meshmorphomat.h... Parsing file /casa/host/build/include/aims/distancemap/meshmorphomat.h... Preprocessing /casa/host/build/include/aims/distancemap/meshmorphomat_d.h... Parsing file /casa/host/build/include/aims/distancemap/meshmorphomat_d.h... Preprocessing /casa/host/build/include/aims/distancemap/meshvoronoi.h... Parsing file /casa/host/build/include/aims/distancemap/meshvoronoi.h... Preprocessing /casa/host/build/include/aims/distancemap/meshvoronoi_d.h... Parsing file /casa/host/build/include/aims/distancemap/meshvoronoi_d.h... Preprocessing /casa/host/build/include/aims/distancemap/meshparcellation.h... Parsing file /casa/host/build/include/aims/distancemap/meshparcellation.h... Preprocessing /casa/host/build/include/aims/distancemap/meshparcellation_d.h... Parsing file /casa/host/build/include/aims/distancemap/meshparcellation_d.h... Preprocessing /casa/host/build/include/aims/distancemap/stlsort.h... Parsing file /casa/host/build/include/aims/distancemap/stlsort.h... Preprocessing /casa/host/build/include/aims/distancemap/projection.h... Parsing file /casa/host/build/include/aims/distancemap/projection.h... Preprocessing /casa/host/build/include/aims/distancemap/thickness.h... Parsing file /casa/host/build/include/aims/distancemap/thickness.h... Preprocessing /casa/host/build/include/aims/distancemap/voronoi.h... Parsing file /casa/host/build/include/aims/distancemap/voronoi.h... Preprocessing /casa/host/build/include/aims/estimation/estimation_g.h... Parsing file /casa/host/build/include/aims/estimation/estimation_g.h... Preprocessing /casa/host/build/include/aims/estimation/gmlfunc.h... Parsing file /casa/host/build/include/aims/estimation/gmlfunc.h... Preprocessing /casa/host/build/include/aims/estimation/lms-estimator.h... Parsing file /casa/host/build/include/aims/estimation/lms-estimator.h... Preprocessing /casa/host/build/include/aims/estimation/m-estimator.h... Parsing file /casa/host/build/include/aims/estimation/m-estimator.h... Preprocessing /casa/host/build/include/aims/estimation/m-func.h... Parsing file /casa/host/build/include/aims/estimation/m-func.h... Preprocessing /casa/host/build/include/aims/estimation/medfunc.h... Parsing file /casa/host/build/include/aims/estimation/medfunc.h... Preprocessing /casa/host/build/include/aims/estima[ 92%] Built target AimsIndexCluster [ 92%] Built target AimsInterlaceVolumes [ 92%] Built target AimsIndividSlices [ 92%] Built target AimsInterpolate tion/msfunc.h... Parsing file /casa/host/build/include/aims/estimation/msfunc.h... Preprocessing /casa/host/build/include/aims/estimation/wlms-estimator.h... Parsing file /casa/host/build/include/aims/estimation/wlms-estimator.h... Preprocessing /casa/host/build/include/aims/fastComputation/tabulation.h... Parsing file /casa/host/build/include/aims/fastComputation/tabulation.h... Preprocessing /casa/host/build/include/aims/fibers/fiberDistance.h... Parsing file /casa/host/build/include/aims/fibers/fiberDistance.h... Preprocessing /casa/host/build/include/aims/ffd/tabulSpline.h... Parsing file /casa/host/build/include/aims/ffd/tabulSpline.h... Preprocessing /casa/host/build/include/aims/foldgraph/foldgraphattributes.h... Parsing file /casa/host/build/include/aims/foldgraph/foldgraphattributes.h... Preprocessing /casa/host/build/include/aims/foldgraph/foldoversegmentation.h... Parsing file /casa/host/build/include/aims/foldgraph/foldoversegmentation.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_base.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_base.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_subdivision.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_subdivision.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_dijkstra_alternative.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_dijkstra_alternative.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_constants_and_simple_functions.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_constants_and_simple_functions.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_dijkstra.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_dijkstra.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_memory.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_memory.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_exact_elements.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_exact_elements.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_mesh_elements.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_mesh_elements.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_exact.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_exact.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_mesh.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_mesh.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_graph_base.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesic_algorithm_graph_base.h... Preprocessing /casa/host/build/include/aims/geodesicpath/geodesicPath.h... Parsing file /casa/host/build/include/aims/geodesicpath/geodesicPath.h... Preprocessing /casa/host/build/include/aims/histogram/histogram_g.h... Parsing file /casa/host/build/include/aims/histogram/histogram_g.h... Preprocessing /casa/host/build/include/aims/histogram/cumulated.h... Parsing file /casa/host/build/include/aims/histogram/cumulated.h... Preprocessing /casa/host/build/include/aims/histogram/histogram.h... Parsing file /casa/host/build/include/aims/histogram/histogram.h... Preprocessing /casa/host/build/include/aims/histogram/simpleHisto.h... Parsing file /casa/host/build/include/aims/histogram/simpleHisto.h... Preprocessing /casa/host/build/include/aims/histogram/equalizedHisto.h... Parsing file /casa/host/build/include/aims/histogram/equalizedHisto.h... Preprocessing /casa/host/build/include/aims/histogram/regularBinnedHisto.h... Parsing file /casa/host/build/include/aims/histogram/regularBinnedHisto.h... Preprocessing /casa/host/build/include/aims/information/information.h... Parsing file /casa/host/build/include/aims/information/information.h... Preprocessing [ 92%] Built target AimsLabelReorder [ 92%] Built target AimsMergeFFDLabels [ 92%] Built target AimsMaskContour [ 92%] Built target AimsMeshMatching /casa/host/build/include/aims/information/pdf.h... Parsing file /casa/host/build/include/aims/information/pdf.h... Preprocessing /casa/host/build/include/aims/interpolation/interpolatedvolume.h... Parsing file /casa/host/build/include/aims/interpolation/interpolatedvolume.h... Preprocessing /casa/host/build/include/aims/interpolation/interpolatedvolume_d.h... Parsing file /casa/host/build/include/aims/interpolation/interpolatedvolume_d.h... Preprocessing /casa/host/build/include/aims/io/roiselectorR.h... Parsing file /casa/host/build/include/aims/io/roiselectorR.h... Preprocessing /casa/host/build/include/aims/io/roigtmR.h... Parsing file /casa/host/build/include/aims/io/roigtmR.h... Preprocessing /casa/host/build/include/aims/io/roigtmW.h... Parsing file /casa/host/build/include/aims/io/roigtmW.h... Preprocessing /casa/host/build/include/aims/math/math_g.h... Parsing file /casa/host/build/include/aims/math/math_g.h... Preprocessing /casa/host/build/include/aims/math/balanc.h... Parsing file /casa/host/build/include/aims/math/balanc.h... Preprocessing /casa/host/build/include/aims/math/balbak.h... Parsing file /casa/host/build/include/aims/math/balbak.h... Preprocessing /casa/host/build/include/aims/math/bessel.h... Parsing file /casa/host/build/include/aims/math/bessel.h... Preprocessing /casa/host/build/include/aims/math/curv2Diso.h... Parsing file /casa/host/build/include/aims/math/curv2Diso.h... Preprocessing /casa/host/build/include/aims/math/curv3Diso.h... Parsing file /casa/host/build/include/aims/math/curv3Diso.h... Preprocessing /casa/host/build/include/aims/math/discriminantanalysis.h... Parsing file /casa/host/build/include/aims/math/discriminantanalysis.h... Preprocessing /casa/host/build/include/aims/math/discriminantanalysis_d.h... Parsing file /casa/host/build/include/aims/math/discriminantanalysis_d.h... Preprocessing /casa/host/build/include/aims/math/distspheric.h... Parsing file /casa/host/build/include/aims/math/distspheric.h... Preprocessing /casa/host/build/include/aims/math/eigen.h... Parsing file /casa/host/build/include/aims/math/eigen.h... Preprocessing /casa/host/build/include/aims/math/elmhes.h... Parsing file /casa/host/build/include/aims/math/elmhes.h... Preprocessing /casa/host/build/include/aims/math/eltran.h... Parsing file /casa/host/build/include/aims/math/eltran.h... Preprocessing /casa/host/build/include/aims/math/gaussj.h... Parsing file /casa/host/build/include/aims/math/gaussj.h... Preprocessing /casa/host/build/include/aims/math/geometry.h... Parsing file /casa/host/build/include/aims/math/geometry.h... Preprocessing /casa/host/build/include/aims/math/gradient.h... Parsing file /casa/host/build/include/aims/math/gradient.h... Preprocessing /casa/host/build/include/aims/math/harris.h... Parsing file /casa/host/build/include/aims/math/harris.h... Preprocessing /casa/host/build/include/aims/math/householder.h... Parsing file /casa/host/build/include/aims/math/householder.h... Preprocessing /casa/host/build/include/aims/math/hqr.h... Parsing file /casa/host/build/include/aims/math/hqr.h... Preprocessing /casa/host/build/include/aims/math/hypergeometric.h... Parsing file /casa/host/build/include/aims/math/hypergeometric.h... Preprocessing /casa/host/build/include/aims/math/knn.h... Parsing file /casa/host/build/include/aims/math/knn.h... Preprocessing /casa/host/build/include/aims/math/multilinfit.h... Parsing file /casa/host/build/include/aims/math/multilinfit.h... Preprocessing /casa/host/build/include/aims/math/random.h... Parsing file /casa/host/build/include/aims/math/random.h... Preprocessing /casa/host/build/include/aims/math/svd.h... Parsing file /casa/host/build/include/aims/math/svd.h... Preprocessing /casa/host/build/include/aims/math/pca.h... Parsing file /casa/host/build/include/aims/math/pca.h... Preprocessing /casa/host/build/include/aims/math/pca_d.h... Parsing file /casa/host/build/include/aims/math/pca_d.h... Preprocessing /casa/host/build/include/aims/math/ppca.h... Parsing file /casa/host/build/include/aims/math/ppca.h... Preprocessing /casa/host/build/include/aims//casa/host/build/include/aims/math/bspline.h:181: warning: unbalanced grouping commands /casa/host/build/include/aims/math/bspline.h:193: warning: unbalanced grouping commands [ 92%] Built target AimsMIBucketRegister [ 92%] Built target AimsMidPlaneMask [ 92%] Built target AimsMosaic [ 92%] Built target AimsMultiRecal math/ppca_d.h... Parsing file /casa/host/build/include/aims/math/ppca_d.h... Preprocessing /casa/host/build/include/aims/math/bspline.h... Parsing file /casa/host/build/include/aims/math/bspline.h... Preprocessing /casa/host/build/include/aims/math/bspline2.h... Parsing file /casa/host/build/include/aims/math/bspline2.h... Preprocessing /casa/host/build/include/aims/math/bspline3.h... Parsing file /casa/host/build/include/aims/math/bspline3.h... Preprocessing /casa/host/build/include/aims/math/sobel.h... Parsing file /casa/host/build/include/aims/math/sobel.h... Preprocessing /casa/host/build/include/aims/math/tensorMatrix.h... Parsing file /casa/host/build/include/aims/math/tensorMatrix.h... Preprocessing /casa/host/build/include/aims/math/tqli.h... Parsing file /casa/host/build/include/aims/math/tqli.h... Preprocessing /casa/host/build/include/aims/mesh/mesh_g.h... Parsing file /casa/host/build/include/aims/mesh/mesh_g.h... Preprocessing /casa/host/build/include/aims/mesh/curv.h... Parsing file /casa/host/build/include/aims/mesh/curv.h... Preprocessing /casa/host/build/include/aims/mesh/facet.h... Parsing file /casa/host/build/include/aims/mesh/facet.h... Preprocessing /casa/host/build/include/aims/mesh/geometric.h... Parsing file /casa/host/build/include/aims/mesh/geometric.h... Preprocessing /casa/host/build/include/aims/mesh/inflate.h... Parsing file /casa/host/build/include/aims/mesh/inflate.h... Preprocessing /casa/host/build/include/aims/mesh/mesher.h... Parsing file /casa/host/build/include/aims/mesh/mesher.h... Preprocessing /casa/host/build/include/aims/mesh/meshinterpoler.h... Parsing file /casa/host/build/include/aims/mesh/meshinterpoler.h... Preprocessing /casa/host/build/include/aims/mesh/meshinterpoler_d.h... Parsing file /casa/host/build/include/aims/mesh/meshinterpoler_d.h... Preprocessing /casa/host/build/include/aims/mesh/meshinterpoler_p.h... Parsing file /casa/host/build/include/aims/mesh/meshinterpoler_p.h... Preprocessing /casa/host/build/include/aims/mesh/meshwatershed.h... Parsing file /casa/host/build/include/aims/mesh/meshwatershed.h... Preprocessing /casa/host/build/include/aims/mesh/mesh_graph.h... Parsing file /casa/host/build/include/aims/mesh/mesh_graph.h... Preprocessing /casa/host/build/include/aims/mesh/mesh_graph_d.h... Parsing file /casa/host/build/include/aims/mesh/mesh_graph_d.h... Preprocessing /casa/host/build/include/aims/moment/geomMoment.h... Parsing file /casa/host/build/include/aims/moment/geomMoment.h... Preprocessing /casa/host/build/include/aims/moment/momBase.h... Parsing file /casa/host/build/include/aims/moment/momBase.h... Preprocessing /casa/host/build/include/aims/moment/momFactory.h... Parsing file /casa/host/build/include/aims/moment/momFactory.h... Preprocessing /casa/host/build/include/aims/moment/momIncStgy.h... Parsing file /casa/host/build/include/aims/moment/momIncStgy.h... Preprocessing /casa/host/build/include/aims/moment/momInvariant.h... Parsing file /casa/host/build/include/aims/moment/momInvariant.h... Preprocessing /casa/host/build/include/aims/moment/momNormStgy.h... Parsing file /casa/host/build/include/aims/moment/momNormStgy.h... Preprocessing /casa/host/build/include/aims/moment/momStgy.h... Parsing file /casa/host/build/include/aims/moment/momStgy.h... Preprocessing /casa/host/build/include/aims/moment/momSurfStgy.h... Parsing file /casa/host/build/include/aims/moment/momSurfStgy.h... Preprocessing /casa/host/build/include/aims/moment/momTriFactory.h... Parsing file /casa/host/build/include/aims/moment/momTriFactory.h... Preprocessing /casa/host/build/include/aims/moment/momTriStgy.h... Parsing file /casa/host/build/include/aims/moment/momTriStgy.h... Preprocessing /casa/host/build/include/aims/moment/momVolStgy.h... Parsing file /casa/host/build/include/aims/moment/momVolStgy.h... Preprocessing /casa/host/build/include/aims/moment/moment.h... Parsing file /casa/host/build/include/aims/moment/moment.h... Preprocessing /casa/host/build/include/aims/moment/moment_g.h... Parsing file /casa/host/build/include/aims/moment/moment_g.h... Preprocessing [ 92%] Built target AimsRebuildComp [ 92%] Built target AimsRgbToHsv [ 92%] Built target AimsOverlapInfo [ 92%] Built target AimsResampleFromFieldsData /casa/host/build/include/aims/moment/triMoment.h... Parsing file /casa/host/build/include/aims/moment/triMoment.h... Preprocessing /casa/host/build/include/aims/morphology/morphogreylevel_d.h... Parsing file /casa/host/build/include/aims/morphology/morphogreylevel_d.h... Preprocessing /casa/host/build/include/aims/morphology/morphology_g.h... Parsing file /casa/host/build/include/aims/morphology/morphology_g.h... Preprocessing /casa/host/build/include/aims/morphology/operatormorpho.h... Parsing file /casa/host/build/include/aims/morphology/operatormorpho.h... Preprocessing /casa/host/build/include/aims/mpi/types.h... Parsing file /casa/host/build/include/aims/mpi/types.h... Preprocessing /casa/host/build/include/aims/optimization/covsrt.h... Parsing file /casa/host/build/include/aims/optimization/covsrt.h... Preprocessing /casa/host/build/include/aims/optimization/deterministic.h... Parsing file /casa/host/build/include/aims/optimization/deterministic.h... Preprocessing /casa/host/build/include/aims/optimization/levmrq.h... Parsing file /casa/host/build/include/aims/optimization/levmrq.h... Preprocessing /casa/host/build/include/aims/optimization/lm2gauss.h... Parsing file /casa/host/build/include/aims/optimization/lm2gauss.h... Preprocessing /casa/host/build/include/aims/optimization/lmfunc.h... Parsing file /casa/host/build/include/aims/optimization/lmfunc.h... Preprocessing /casa/host/build/include/aims/optimization/lmgamma.h... Parsing file /casa/host/build/include/aims/optimization/lmgamma.h... Preprocessing /casa/host/build/include/aims/optimization/lmgauss.h... Parsing file /casa/host/build/include/aims/optimization/lmgauss.h... Preprocessing /casa/host/build/include/aims/optimization/objective.h... Parsing file /casa/host/build/include/aims/optimization/objective.h... Preprocessing /casa/host/build/include/aims/optimization/optimization_g.h... Parsing file /casa/host/build/include/aims/optimization/optimization_g.h... Preprocessing /casa/host/build/include/aims/optimization/optimizer.h... Parsing file /casa/host/build/include/aims/optimization/optimizer.h... Preprocessing /casa/host/build/include/aims/optimization/powell.h... Parsing file /casa/host/build/include/aims/optimization/powell.h... Preprocessing /casa/host/build/include/aims/optimization/singleoptimizer.h... Parsing file /casa/host/build/include/aims/optimization/singleoptimizer.h... Preprocessing /casa/host/build/include/aims/points_distribution/points_distribution.h... Parsing file /casa/host/build/include/aims/points_distribution/points_distribution.h... Preprocessing /casa/host/build/include/aims/primalsketch/dericheSmoother_d.h... Parsing file /casa/host/build/include/aims/primalsketch/dericheSmoother_d.h... Preprocessing /casa/host/build/include/aims/primalsketch/dericheSmoother.h... Parsing file /casa/host/build/include/aims/primalsketch/dericheSmoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/peronaMalikSmoother_d.h... Parsing file /casa/host/build/include/aims/primalsketch/peronaMalikSmoother_d.h... Preprocessing /casa/host/build/include/aims/primalsketch/peronaMalikSmoother.h... Parsing file /casa/host/build/include/aims/primalsketch/peronaMalikSmoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/finiteElementSmoother_d.h... Parsing file /casa/host/build/include/aims/primalsketch/finiteElementSmoother_d.h... Preprocessing /casa/host/build/include/aims/primalsketch/finiteElementSmoother.h... Parsing file /casa/host/build/include/aims/primalsketch/finiteElementSmoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/greyLevelBlob.h... Parsing file /casa/host/build/include/aims/primalsketch/greyLevelBlob.h... Preprocessing /casa/host/build/include/aims/primalsketch/scalespace.h... Parsing file /casa/host/build/include/aims/primalsketch/scalespace.h... Preprocessing /casa/host/build/include/aims/primalsketch/scaleLevel.h... Parsing file /casa/host/build/include/aims/primalsketch/scaleLevel.h... Preprocessing /casa/host/build/include/aims/primalsketch/smoother.h... Parsing file /casa/host/build/[ 92%] Built target AimsSamplingInfo [ 92%] Built target AimsRoiOverlap [ 92%] Built target AimsSegment2Modes [ 92%] Built target AimsSeparateComp include/aims/primalsketch/smoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/imageSmoother.h... Parsing file /casa/host/build/include/aims/primalsketch/imageSmoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/surfaceSmoother.h... Parsing file /casa/host/build/include/aims/primalsketch/surfaceSmoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/primalSketch.h... Parsing file /casa/host/build/include/aims/primalsketch/primalSketch.h... Preprocessing /casa/host/build/include/aims/primalsketch/scaleSpaceBlob.h... Parsing file /casa/host/build/include/aims/primalsketch/scaleSpaceBlob.h... Preprocessing /casa/host/build/include/aims/primalsketch/primalSketch2graph.h... Parsing file /casa/host/build/include/aims/primalsketch/primalSketch2graph.h... Preprocessing /casa/host/build/include/aims/primalsketch/primalSketchUtil.h... Parsing file /casa/host/build/include/aims/primalsketch/primalSketchUtil.h... Preprocessing /casa/host/build/include/aims/primalsketch/coupledSmoother.h... Parsing file /casa/host/build/include/aims/primalsketch/coupledSmoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/imageCoupledSmoother.h... Parsing file /casa/host/build/include/aims/primalsketch/imageCoupledSmoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/coupledDiffusion2DSmoother.h... Parsing file /casa/host/build/include/aims/primalsketch/coupledDiffusion2DSmoother.h... Preprocessing /casa/host/build/include/aims/primalsketch/coupledDiffusion2DSmoother_d.h... Parsing file /casa/host/build/include/aims/primalsketch/coupledDiffusion2DSmoother_d.h... Preprocessing /casa/host/build/include/aims/pyramid/maxfunc.h... Parsing file /casa/host/build/include/aims/pyramid/maxfunc.h... Preprocessing /casa/host/build/include/aims/pyramid/meanfunc.h... Parsing file /casa/host/build/include/aims/pyramid/meanfunc.h... Preprocessing /casa/host/build/include/aims/pyramid/medfunc.h... Parsing file /casa/host/build/include/aims/pyramid/medfunc.h... Preprocessing /casa/host/build/include/aims/pyramid/pyramid_g.h... Parsing file /casa/host/build/include/aims/pyramid/pyramid_g.h... Preprocessing /casa/host/build/include/aims/pyramid/pyramid.h... Parsing file /casa/host/build/include/aims/pyramid/pyramid.h... Preprocessing /casa/host/build/include/aims/pyramid/pyr-func.h... Parsing file /casa/host/build/include/aims/pyramid/pyr-func.h... Preprocessing /casa/host/build/include/aims/pyramid/convolutionsubsampler.h... Parsing file /casa/host/build/include/aims/pyramid/convolutionsubsampler.h... Preprocessing /casa/host/build/include/aims/pyramid/convolutionsubsampler_d.h... Parsing file /casa/host/build/include/aims/pyramid/convolutionsubsampler_d.h... Preprocessing /casa/host/build/include/aims/pyramid/splinesubsampler.h... Parsing file /casa/host/build/include/aims/pyramid/splinesubsampler.h... Preprocessing /casa/host/build/include/aims/pyramid/splinesubsampler_d.h... Parsing file /casa/host/build/include/aims/pyramid/splinesubsampler_d.h... Preprocessing /casa/host/build/include/aims/pyramid/movingaveragesubsampler.h... Parsing file /casa/host/build/include/aims/pyramid/movingaveragesubsampler.h... Preprocessing /casa/host/build/include/aims/pyramid/splinepyramid.h... Parsing file /casa/host/build/include/aims/pyramid/splinepyramid.h... Preprocessing /casa/host/build/include/aims/pyramid/splinepyramid_d.h... Parsing file /casa/host/build/include/aims/pyramid/splinepyramid_d.h... Preprocessing /casa/host/build/include/aims/pyramid/subsamplingpyramid.h... Parsing file /casa/host/build/include/aims/pyramid/subsamplingpyramid.h... Preprocessing /casa/host/build/include/aims/pyramid/subsamplingpyramid_d.h... Parsing file /casa/host/build/include/aims/pyramid/subsamplingpyramid_d.h... Preprocessing /casa/host/build/include/aims/registration/block_matching.h... Parsing file /casa/host/build/include/aims/registration/block_matching.h... Preprocessing /casa/host/build/include/aims/registration/block_matching_d.h... Parsing file /casa/host/build/include/aims/registration/block_matchin/casa/host/build/include/aims/resampling/masklinresampler.h:100: warning: Found ';' while parsing initializer list! (doxygen could be confused by a macro call without semicolon) g_d.h... Preprocessing /casa/host/build/include/aims/registration/displacement_field.h... Parsing file /casa/host/build/include/aims/registration/displacement_field.h... Preprocessing /casa/host/build/include/aims/registration/displacement_field_d.h... Parsing file /casa/host/build/include/aims/registration/displacement_field_d.h... Preprocessing /casa/host/build/include/aims/registration/ffd.h... Parsing file /casa/host/build/include/aims/registration/ffd.h... Preprocessing /casa/host/build/include/aims/registration/minimisation.h... Parsing file /casa/host/build/include/aims/registration/minimisation.h... Preprocessing /casa/host/build/include/aims/registration/minimisation_d.h... Parsing file /casa/host/build/include/aims/registration/minimisation_d.h... Preprocessing /casa/host/build/include/aims/registration/scale_control.h... Parsing file /casa/host/build/include/aims/registration/scale_control.h... Preprocessing /casa/host/build/include/aims/registration/scale_control_d.h... Parsing file /casa/host/build/include/aims/registration/scale_control_d.h... Preprocessing /casa/host/build/include/aims/registration/transformation.h... Parsing file /casa/host/build/include/aims/registration/transformation.h... Preprocessing /casa/host/build/include/aims/registration/transformation_d.h... Parsing file /casa/host/build/include/aims/registration/transformation_d.h... Preprocessing /casa/host/build/include/aims/resampling/bucketmapsampler.h... Parsing file /casa/host/build/include/aims/resampling/bucketmapsampler.h... Preprocessing /casa/host/build/include/aims/resampling/cubicresampler.h... Parsing file /casa/host/build/include/aims/resampling/cubicresampler.h... Preprocessing /casa/host/build/include/aims/resampling/cubicresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/cubicresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/generalsampler.h... Parsing file /casa/host/build/include/aims/resampling/generalsampler.h... Preprocessing /casa/host/build/include/aims/resampling/harmonicCageResampler.h... Parsing file /casa/host/build/include/aims/resampling/harmonicCageResampler.h... Preprocessing /casa/host/build/include/aims/resampling/linearresampler.h... Parsing file /casa/host/build/include/aims/resampling/linearresampler.h... Preprocessing /casa/host/build/include/aims/resampling/linearresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/linearresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/majoritylabelresampler.h... Parsing file /casa/host/build/include/aims/resampling/majoritylabelresampler.h... Preprocessing /casa/host/build/include/aims/resampling/majoritylabelresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/majoritylabelresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/masklinresampler.h... Parsing file /casa/host/build/include/aims/resampling/masklinresampler.h... Preprocessing /casa/host/build/include/aims/resampling/masklinresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/masklinresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/meshToVoxelsResampler.h... Parsing file /casa/host/build/include/aims/resampling/meshToVoxelsResampler.h... Preprocessing /casa/host/build/include/aims/resampling/meshToVoxelsResampler_d.h... Parsing file /casa/host/build/include/aims/resampling/meshToVoxelsResampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/nearestneighborresampler.h... Parsing file /casa/host/build/include/aims/resampling/nearestneighborresampler.h... Preprocessing /casa/host/build/include/aims/resampling/nearestneighborresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/nearestneighborresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/quadraticresampler.h... Parsing file /casa/host/build/include/aims/resampling/quadraticresampler.h... Preprocessing /casa/host/build/include/aims/resampling/quadraticresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/quadraticresampler_d.h... Prepr[ 92%] Built target AimsStereologySampling [ 92%] Built target AimsStereotaxy [ 92%] Built target AimsWatershed [ 92%] Built target AimsSubSamplingConservative ocessing /casa/host/build/include/aims/resampling/quarticresampler.h... Parsing file /casa/host/build/include/aims/resampling/quarticresampler.h... Preprocessing /casa/host/build/include/aims/resampling/quarticresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/quarticresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/quinticresampler.h... Parsing file /casa/host/build/include/aims/resampling/quinticresampler.h... Preprocessing /casa/host/build/include/aims/resampling/quinticresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/quinticresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/resampling_g.h... Parsing file /casa/host/build/include/aims/resampling/resampling_g.h... Preprocessing /casa/host/build/include/aims/resampling/resampler.h... Parsing file /casa/host/build/include/aims/resampling/resampler.h... Preprocessing /casa/host/build/include/aims/resampling/resampler_d.h... Parsing file /casa/host/build/include/aims/resampling/resampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/resamplerfactory.h... Parsing file /casa/host/build/include/aims/resampling/resamplerfactory.h... Preprocessing /casa/host/build/include/aims/resampling/resamplerfactory_d.h... Parsing file /casa/host/build/include/aims/resampling/resamplerfactory_d.h... Preprocessing /casa/host/build/include/aims/resampling/extremadifferencesubsampling.h... Parsing file /casa/host/build/include/aims/resampling/extremadifferencesubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/majoritysubsampling.h... Parsing file /casa/host/build/include/aims/resampling/majoritysubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/maxsubsampling.h... Parsing file /casa/host/build/include/aims/resampling/maxsubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/meansubsampling.h... Parsing file /casa/host/build/include/aims/resampling/meansubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/medianresampler.h... Parsing file /casa/host/build/include/aims/resampling/medianresampler.h... Preprocessing /casa/host/build/include/aims/resampling/medianresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/medianresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/mediansubsampling.h... Parsing file /casa/host/build/include/aims/resampling/mediansubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/minsubsampling.h... Parsing file /casa/host/build/include/aims/resampling/minsubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/notnullmeansubsampling.h... Parsing file /casa/host/build/include/aims/resampling/notnullmeansubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/notnullmediansubsampling.h... Parsing file /casa/host/build/include/aims/resampling/notnullmediansubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/sumsubsampling.h... Parsing file /casa/host/build/include/aims/resampling/sumsubsampling.h... Preprocessing /casa/host/build/include/aims/resampling/samplable.h... Parsing file /casa/host/build/include/aims/resampling/samplable.h... Preprocessing /casa/host/build/include/aims/resampling/samplable_cone.h... Parsing file /casa/host/build/include/aims/resampling/samplable_cone.h... Preprocessing /casa/host/build/include/aims/resampling/samplable_sphere.h... Parsing file /casa/host/build/include/aims/resampling/samplable_sphere.h... Preprocessing /casa/host/build/include/aims/resampling/sampler.h... Parsing file /casa/host/build/include/aims/resampling/sampler.h... Preprocessing /casa/host/build/include/aims/resampling/sixthorderresampler.h... Parsing file /casa/host/build/include/aims/resampling/sixthorderresampler.h... Preprocessing /casa/host/build/include/aims/resampling/sixthorderresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/sixthorderresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/seventhorderresampler.h... Parsing file /casa/host/build/inclu[ 92%] Built target AimsSeededWatershed [ 92%] Built target bioCellBoundingBoxesGenerate [ 92%] Built target bioClusterStatistics [ 92%] Built target bioCellEvaluate /casa/host/build/include/aims/signalfilter/elementfilterfactory.h:94: warning: File ended in the middle of a comment block! Perhaps a missing \endcode? de/aims/resampling/seventhorderresampler.h... Preprocessing /casa/host/build/include/aims/resampling/seventhorderresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/seventhorderresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/splineresampler.h... Parsing file /casa/host/build/include/aims/resampling/splineresampler.h... Preprocessing /casa/host/build/include/aims/resampling/splineresampler_d.h... Parsing file /casa/host/build/include/aims/resampling/splineresampler_d.h... Preprocessing /casa/host/build/include/aims/resampling/subsamplingimagealgorithm.h... Parsing file /casa/host/build/include/aims/resampling/subsamplingimagealgorithm.h... Preprocessing /casa/host/build/include/aims/resampling/polynomial.h... Parsing file /casa/host/build/include/aims/resampling/polynomial.h... Preprocessing /casa/host/build/include/aims/roi/clusterArg.h... Parsing file /casa/host/build/include/aims/roi/clusterArg.h... Preprocessing /casa/host/build/include/aims/roi/clusterArg_d.h... Parsing file /casa/host/build/include/aims/roi/clusterArg_d.h... Preprocessing /casa/host/build/include/aims/roi/roigtm.h... Parsing file /casa/host/build/include/aims/roi/roigtm.h... Preprocessing /casa/host/build/include/aims/roi/roistat.h... Parsing file /casa/host/build/include/aims/roi/roistat.h... Preprocessing /casa/host/build/include/aims/roi/roiselector.h... Parsing file /casa/host/build/include/aims/roi/roiselector.h... Preprocessing /casa/host/build/include/aims/scalespace/bucketblob.h... Parsing file /casa/host/build/include/aims/scalespace/bucketblob.h... Preprocessing /casa/host/build/include/aims/scalespace/bucketblob_d.h... Parsing file /casa/host/build/include/aims/scalespace/bucketblob_d.h... Preprocessing /casa/host/build/include/aims/scalespace/meshBlob.h... Parsing file /casa/host/build/include/aims/scalespace/meshBlob.h... Preprocessing /casa/host/build/include/aims/scalespace/meshDiffuse.h... Parsing file /casa/host/build/include/aims/scalespace/meshDiffuse.h... Preprocessing /casa/host/build/include/aims/signalfilter/signalfilter_g.h... Parsing file /casa/host/build/include/aims/signalfilter/signalfilter_g.h... Preprocessing /casa/host/build/include/aims/signalfilter/convol.h... Parsing file /casa/host/build/include/aims/signalfilter/convol.h... Preprocessing /casa/host/build/include/aims/signalfilter/convolutionfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/convolutionfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/convolutionfilter_d.h... Parsing file /casa/host/build/include/aims/signalfilter/convolutionfilter_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/differencefilter.h... Parsing file /casa/host/build/include/aims/signalfilter/differencefilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/diffusionSmoother_d.h... Parsing file /casa/host/build/include/aims/signalfilter/diffusionSmoother_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/diffusionSmoother.h... Parsing file /casa/host/build/include/aims/signalfilter/diffusionSmoother.h... Preprocessing /casa/host/build/include/aims/signalfilter/elementfilterfactory.h... Parsing file /casa/host/build/include/aims/signalfilter/elementfilterfactory.h... Preprocessing /casa/host/build/include/aims/signalfilter/elementfilterfactory_d.h... Parsing file /casa/host/build/include/aims/signalfilter/elementfilterfactory_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringfunction.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction_element.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringfunction_element.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction_element_rgb.h... Parsing file /casa/host/build/include/aims[ 92%] Built target bioComponentConnexe /signalfilter/filteringfunction_element_rgb.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction_element_rgb_d.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringfunction_element_rgb_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction_linear.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringfunction_linear.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction_linear_rgb.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringfunction_linear_rgb.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringfunction_linear_rgb_d.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringfunction_linear_rgb_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/filteringimagealgorithm.h... Parsing file /casa/host/build/include/aims/signalfilter/filteringimagealgorithm.h... Preprocessing /casa/host/build/include/aims/signalfilter/firfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/firfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/g2dsmooth.h... Parsing file /casa/host/build/include/aims/signalfilter/g2dsmooth.h... Preprocessing /casa/host/build/include/aims/signalfilter/g3dsmooth.h... Parsing file /casa/host/build/include/aims/signalfilter/g3dsmooth.h... Preprocessing /casa/host/build/include/aims/signalfilter/gaborfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/gaborfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/gcoef.h... Parsing file /casa/host/build/include/aims/signalfilter/gcoef.h... Preprocessing /casa/host/build/include/aims/signalfilter/gcolumns.h... Parsing file /casa/host/build/include/aims/signalfilter/gcolumns.h... Preprocessing /casa/host/build/include/aims/signalfilter/ghessian.h... Parsing file /casa/host/build/include/aims/signalfilter/ghessian.h... Preprocessing /casa/host/build/include/aims/signalfilter/glines.h... Parsing file /casa/host/build/include/aims/signalfilter/glines.h... Preprocessing /casa/host/build/include/aims/signalfilter/grecurse.h... Parsing file /casa/host/build/include/aims/signalfilter/grecurse.h... Preprocessing /casa/host/build/include/aims/signalfilter/gslices.h... Parsing file /casa/host/build/include/aims/signalfilter/gslices.h... Preprocessing /casa/host/build/include/aims/signalfilter/parity.h... Parsing file /casa/host/build/include/aims/signalfilter/parity.h... Preprocessing /casa/host/build/include/aims/signalfilter/gjacobian.h... Parsing file /casa/host/build/include/aims/signalfilter/gjacobian.h... Preprocessing /casa/host/build/include/aims/signalfilter/ggradient.h... Parsing file /casa/host/build/include/aims/signalfilter/ggradient.h... Preprocessing /casa/host/build/include/aims/signalfilter/gframes.h... Parsing file /casa/host/build/include/aims/signalfilter/gframes.h... Preprocessing /casa/host/build/include/aims/signalfilter/medianfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/medianfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/meanfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/meanfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/minfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/minfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/maxfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/maxfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/majorityfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/majorityfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/movingaveragefilter.h... Parsing file /casa/host/build/include/aims/signalfilter/movingaveragefilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/sumfilter.h... Parsing file /casa/host/build/inc[ 92%] Built target bioExtractDice /casa/host/build/include/aims/signalfilter/linearfilterfactory.h:76: warning: File ended in the middle of a comment block! Perhaps a missing \endcode? [ 92%] Built target bioCorrectMissingLabels [ 92%] Built target bioExtractAmyloidLoad done checking consistency... /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/pyanatomist_addons.rst: WARNING: document isn't included in any toctree done preparing documents... lude/aims/signalfilter/sumfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/variancefilter.h... Parsing file /casa/host/build/include/aims/signalfilter/variancefilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/sdfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/sdfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/iirfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/iirfilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/linearfilterfactory.h... Parsing file /casa/host/build/include/aims/signalfilter/linearfilterfactory.h... Preprocessing /casa/host/build/include/aims/signalfilter/linearfilterfactory_d.h... Parsing file /casa/host/build/include/aims/signalfilter/linearfilterfactory_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/splinefilter.h... Parsing file /casa/host/build/include/aims/signalfilter/splinefilter.h... Preprocessing /casa/host/build/include/aims/signalfilter/splinefilter_d.h... Parsing file /casa/host/build/include/aims/signalfilter/splinefilter_d.h... Preprocessing /casa/host/build/include/aims/signalfilter/types.h... Parsing file /casa/host/build/include/aims/signalfilter/types.h... Preprocessing /casa/host/build/include/aims/signalfilter/vfilter.h... Parsing file /casa/host/build/include/aims/signalfilter/vfilter.h... Preprocessing /casa/host/build/include/aims/spam/spam.h... Parsing file /casa/host/build/include/aims/spam/spam.h... Preprocessing /casa/host/build/include/aims/talairach/cramer.h... Parsing file /casa/host/build/include/aims/talairach/cramer.h... Preprocessing /casa/host/build/include/aims/talairach/talPoints.h... Parsing file /casa/host/build/include/aims/talairach/talPoints.h... Preprocessing /casa/host/build/include/aims/talairach/talairach.h... Parsing file /casa/host/build/include/aims/talairach/talairach.h... Preprocessing /casa/host/build/include/aims/talairach/talACPCNorm.h... Parsing file /casa/host/build/include/aims/talairach/talACPCNorm.h... Preprocessing /casa/host/build/include/aims/talairach/talBoxBase.h... Parsing file /casa/host/build/include/aims/talairach/talBoxBase.h... Preprocessing /casa/host/build/include/aims/talairach/talBox.h... Parsing file /casa/host/build/include/aims/talairach/talBox.h... Preprocessing /casa/host/build/include/aims/talairach/talVolume.h... Parsing file /casa/host/build/include/aims/talairach/talVolume.h... Preprocessing /casa/host/build/include/aims/talairach/talBoundingBoxPoints.h... Parsing file /casa/host/build/include/aims/talairach/talBoundingBoxPoints.h... Preprocessing /casa/host/build/include/aims/threshold/emthreshold.h... Parsing file /casa/host/build/include/aims/threshold/emthreshold.h... Preprocessing /casa/host/build/include/aims/topology/adjacency.h... Parsing file /casa/host/build/include/aims/topology/adjacency.h... Preprocessing /casa/host/build/include/aims/topology/cc18adjacent.h... Parsing file /casa/host/build/include/aims/topology/cc18adjacent.h... Preprocessing /casa/host/build/include/aims/topology/cc26adjacent.h... Parsing file /casa/host/build/include/aims/topology/cc26adjacent.h... Preprocessing /casa/host/build/include/aims/topology/cc6adjacent.h... Parsing file /casa/host/build/include/aims/topology/cc6adjacent.h... Preprocessing /casa/host/build/include/aims/topology/classifMeaning.h... Parsing file /casa/host/build/include/aims/topology/classifMeaning.h... Preprocessing /casa/host/build/include/aims/topology/components.h... Parsing file /casa/host/build/include/aims/topology/components.h... Preprocessing /casa/host/build/include/aims/topology/components18.h... Parsing file /casa/host/build/include/aims/topology/components18.h... Preprocessing /casa/host/build/include/aims/topology/components26.h... Parsing file /casa/host/build/include/aims/topology/components26.h... Preprocessing /casa/host/build/include/aims/topology/connectivity18.h... Parsing file /casa/host/build/include/aims/topology/connectivity18.h... Preprocessing /casa/host/build/include/aims/topology/connectivity26.h... Parsingdone writing output... [ 50%] index [ 92%] Built target bioPrepareData4DlIndiv [ 92%] Built target bioFindCellSeeds [ 92%] Built target bioRenumberConnectComp [ 92%] Built target bioMacGetSingleBrain /casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag:1: warning: Internal inconsistency: scope for class carto::conversion::Helper::yes not found! [ 92%] Built target bioStatDominanceAppli [ 92%] Built target bioVoxelFeatures [ 92%] Built target AimsAdaptiveGaussianSmoothing [ 92%] Built target AimsEdgeExtract [ 92%] Built target AimsExtremaMap /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:48,535::INFO::Pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.png'. [ 92%] Built target AimsRegionGrowingExtrema [ 92%] Built target AimsSigmaImageCalculate [ 92%] Built target bioVoxelWiseStatistics [ 92%] Generating ../../../share/doc/anatomist-5.2/doxygen/index.html [ 92%] Create "share/doc/5.2" [ 92%] Built target axon-devdoc warning: Tag 'DETAILS_AT_TOP' at line 162 of file '/casa/host/build/build_files/anatomist-free/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 408 of file '/casa/host/build/build_files/anatomist-free/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 653 of file '/casa/host/build/build_files/anatomist-free/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 708 of file '/casa/host/build/build_files/anatomist-free/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 948 of file '/casa/host/build/build_files/anatomist-free/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 954 of file '/casa/host/build/build_files/anatomist-free/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1115 of file '/casa/host/build/build_files/anatomist-free/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1136 of file '/casa/host/build/build_files/anatomist-free/doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! [ 92%] Generating AimsAddNoise2Data help file ... [ 92%] Generating Aims3DPointCloud help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:48,602::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'. [ 92%] Generating AimsActivPixel2Volume help file ... Doxygen version used: 1.9.1 Searching for include files... 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Reading and parsing tag files Reading tag file '/casa/host/build/share/doc/aimsgui-5.2/doxygen/<unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_iterator::const_iterator() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_iterator::const_iterator(carto::VolumeRef< T > vol, int y, int z, int t) <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_iterator::const_iterator(iterator other) <unknown>:1: warning: no uniquely matching class member found for const std::pair< Point4d, const_LowLevelStorage > & aims::SparseVolume< carto::Volume< T > >::const_iterator::operator*() const <unknown>:1: warning: no uniquely matching class member found for const std::pair< Point4d, const_LowLevelStorage > * aims::SparseVolume< carto::Volume< T > >::const_iterator::operator->() const <unknown>:1: warning: documented symbol 'const const_LowLevelStorage & aims::SparseVolume< carto::Volume< T > >::const_iterator::storage' was not declared or defined. <unknown>:1: warning: no uniquely matching class member found for bool aims::SparseVolume< carto::Volume< T > >::const_iterator::operator==(const const_iterator &x) const <unknown>:1: warning: no uniquely matching class member found for bool aims::SparseVolume< carto::Volume< T > >::const_iterator::operator!=(const const_iterator &x) const <unknown>:1: warning: no uniquely matching class member found for const_iterator & aims::SparseVolume< carto::Volume< T > >::const_iterator::operator++() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::const_LowLevelStorage() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::const_LowLevelStorage(const carto::VolumeRef< T > vol, int y, int z, int t) <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::const_LowLevelStorage(const LowLevelStorage &other) <unknown>:1: warning: no uniquely matching class member found for const_iterator aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::begin() const <unknown>:1: warning: no uniquely matching class member found for const_iterator aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::end() const <unknown>:1: warning: no uniquely matching class member found for carto::VolumeRef< T > aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::volume() const <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::iterator::iterator() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::iterator::iterator(carto::VolumeRef< T > vol, int y, int z, int t) <unknown>:1: warning: no uniquely matching class member found for std::pair< Point4d, LowLevelStorage > & aims::SparseVolume< carto::Volume< T > >::iterator::operator*() <unknown>:1: warning: no uniquely matching class member found for std::pair< Point4d, LowLevelStorage > * aims::SparseVolume< carto::Volume< T > >::iterator::operator->() <unknown>:1: warning: documented symbol 'LowLevelStorage & aims::SparseVolume< carto::Volume< T > >::iterator::storage' was not declared or defined. <unknown>:1: warning: no uniquely matching class member found for bool aims::SparseVolume< carto::Volume< T > >::iterator::operator==(const iterator &x) const <unknown>:1: warning: no uniquely matching class member found for bool aims::SparseVolume< carto::Volume< T > >::iterator::operator!=(const iterator &x) const <unknown>:1: warning: no uniquely matching class member found for iterator & aims::SparseVolume< carto::Volume< T > >::iterator::operator++() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::LowLevelStorage() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::LowLevelStorage(carto::VolumeRef< T > vol, int y, int z, int t) <unknown>:1: warning: no uniquely matching class member found for iterator aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::begin() <unknown>:1: warning: no uniquely matching class member found for const_iterator aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::begin() const <unknown>:1: warning: no uniquely matching class member found for iterator aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::end() <unknown>:1: warning: no uniquely matching class member found for const_iterator aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::end() const <unknown>:1: warning: no uniquely matching class member found for carto::VolumeRef< T > aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::volume() const /casa/host/build/include/aims/histogram/cumulated.h:72: warning: member doit belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/histogram/cumulated.h:83: warning: member doit belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/histogram/cumulated.h:105: warning: member valueForPercentage belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:457: warning: member X belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:506: warning: member Y belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:539: warning: member Z belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:572: warning: member T belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:607: warning: member XX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:612: warning: member XY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:617: warning: member XZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:622: warning: member XT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:628: warning: member YX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:633: warning: member YY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:638: warning: member YZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:643: warning: member YT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:649: warning: member ZX belongs to two different groups. The second one found here will be ignored. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:48,789::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'. /casa/host/build/include/aims/math/gradient.h:654: warning: member ZY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:659: warning: member ZZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:664: warning: member ZT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:670: warning: member TX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:675: warning: member TY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:680: warning: member TZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:685: warning: member TT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:693: warning: member XXX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:698: warning: member XXY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:703: warning: member XXZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:708: warning: member XXT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:714: warning: member XYX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:719: warning: member XYY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:724: warning: member XYZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:729: warning: member XYT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:735: warning: member XZX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:740: warning: member XZY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:745: warning: member XZZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:750: warning: member XZT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:756: warning: member XTX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:761: warning: member XTY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:766: warning: member XTZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:771: warning: member XTT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:777: warning: member YXX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:782: warning: member YXY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:787: warning: member YXZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:792: warning: member YXT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:798: warning: member YYX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:803: warning: member YYY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:808: warning: member YYZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:813: warning: member YYT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:819: warning: member YZX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:824: warning: member YZY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:829: warning: member YZZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:834: warning: member YZT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:840: warning: member YTX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:845: warning: member YTY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:850: warning: member YTZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:855: warning: member YTT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:861: warning: member ZXX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:866: warning: member ZXY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:871: warning: member ZXZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:876: warning: member ZXT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:882: warning: member ZYX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:887: warning: member ZYY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:892: warning: member ZYZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:897: warning: member ZYT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:903: warning: member ZZX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:908: warning: member ZZY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:913: warning: member ZZZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:918: warning: member ZZT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:924: warning: member ZTX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:929: warning: member ZTY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:934: warning: member ZTZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:939: warning: member ZTT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:945: warning: member TXX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:950: warning: member TXY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:955: warning: member TXZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:960: warning: member TXT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:966: warning: member TYX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:971: warning: member TYY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:976: warning: member TYZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:981: warning: member TYT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:987: warning: member TZX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:992: warning: member TZY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:997: warning: member TZZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:1002: warning: member TZT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:1008: warning: member TTX belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:1013: warning: member TTY belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:1018: warning: member TTZ belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/gradient.h:1023: warning: member TTT belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/random.h:93: warning: member UniformRandom belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/math/random.h:144: warning: member GaussianRandom belongs to two different groups. The second one found here will be ignored. /casa/host/build/include/aims/pyramid/convolutionsubsampler_d.h:66: warning: no matching class member found for template < F > aims::ConvolutionSubSampler< F >::ConvolutionSubSampler(const F &f, unsigned r) Possible candidates: 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(unsigned r=2)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const Point4du &r)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const BasisFunction &bfunc, unsigned r)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const std::vector< BasisFunction > &bfunc=std::vector< BasisFunction >(), const Point4du &r=Point4du(2, 2, 2, 2))' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const ConvolutionSubSampler &other)' /casa/host/build/include/aims/pyramid/convolutionsubsampler_d.h:76: warning: no matching class member found for template < F > aims::ConvolutionSubSampler< F >::ConvolutionSubSampler(const std::vector< F > &f, const Point4du &r) Possible candidates: 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(unsigned r=2)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const Point4du &r)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const BasisFunction &bfunc, unsigned r)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const std::vector< BasisFunction > &bfunc=std::vector< BasisFunction >(), const Point4du &r=Point4du(2, 2, 2, 2))' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const ConvolutionSubSampler &other)' /casa/host/build/include/aims/pyramid/convolutionsubsampler_d.h:87: warning: no matching class member found for template < F > aims::ConvolutionSubSampler< F >::ConvolutionSubSampler(const aims::ConvolutionSubSampler< F > &other) Possible candidates: 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(unsigned r=2)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const Point4du &r)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const BasisFunction &bfunc, unsigned r)' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const std::vector< BasisFunction > &bfunc=std::vector< BasisFunction >(), const Point4du &r=Point4du(2, 2, 2, 2))' 'aims::ConvolutionSubSampler< BasisFunction >::ConvolutionSubSampler(const ConvolutionSubSampler &other)' /casa/host/build/include/aims/pyramid/convolutionsubsampler_d.h:284: warning: no uniquely matching class member found for template < F > void aims::ConvolutionSubSampler< F >::setBasisFunction(const F &func) Possible candidates: 'void aims::ConvolutionSubSampler< BasisFunction >::setBasisFunction(const BasisFunction &func)' at line 95 of file /casa/host/build/include/aims/pyramid/convolutionsubsampler.h 'void aims::ConvolutionSubSampler< BasisFunction >::setBasisFunction(const std::vector< BasisFunction > &func)' at line 96 of file /casa/host/build/include/aims/pyramid/convolutionsubsampler.h /casa/host/build/include/aims/pyramid/convolutionsubsampler_d.h:290: warning: no uniquely matching class member found for template < F > void aims::ConvolutionSubSampler< F >::setBasisFunction(const std::vector< F > &func) Possible candidates: 'void aims::ConvolutionSubSampler< BasisFunction >::setBasisFunction(const BasisFunction &func)' at line 95 of file /casa/host/build/include/aims/pyramid/convolutionsubsampler.h 'void aims::ConvolutionSubSampler< BasisFunction >::setBasisFunction(const std::vector< BasisFunction > &func)' at line 96 of file /casa/host/build/include/aims/pyramid/convolutionsubsampler.h /casa/host/build/include/aims/resampling/masklinresampler_d.h:59: warning: no uniquely matching class member found for template < T > void aims::MaskLinearResampler::doResample(const carto::Volume< T > &input_data, const soma::Transformation3d &inverse_transform, const T &background, const Point3df &output_location, T &output_value, int t) const /casa/host/build/include/aims/resampling/masklinresampler_d.h:107: warning: no uniquely matching class member found for template < T > void aims::MaskLinearResampler::resample(const carto::Volume< T > &input_data, const aims::AffineTransformation3d &motion, const T &background, carto::Volume< T > &thing, bool verbose) const /casa/host/build/include/aims/signalfilter/convolutionfilter_d.h:49: warning: no matching class member found for template < F > aims::ConvolutionFilter< F >::ConvolutionFilter(const F &f) Possible candidates: 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const BasisFunction &bfunc)' 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const std::vector< BasisFunction > &bfunc=std::vector< BasisFunction >())' 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const ConvolutionFilter &other)' /casa/host/build/include/aims/signalfilter/convolutionfilter_d.h:58: warning: no matching class member found for template < F > aims::ConvolutionFilter< F >::ConvolutionFilter(const std::vector< F > &f) Possible candidates: 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const BasisFunction &bfunc)' 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const std::vector< BasisFunction > &bfunc=std::vector< BasisFunction >())' 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const ConvolutionFilter &other)' /casa/host/build/include/aims/signalfilter/convolutionfilter_d.h:67: warning: no matching class member found for template < F > aims::ConvolutionFilter< F >::ConvolutionFilter(const aims::ConvolutionFilter< F > &other) Possible candidates: 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const BasisFunction &bfunc)' 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const std::vector< BasisFunction > &bfunc=std::vector< BasisFunction >())' 'aims::ConvolutionFilter< BasisFunction >::ConvolutionFilter(const ConvolutionFilter &other)' /casa/host/build/include/aims/signalfilter/convolutionfilter_d.h:231: warning: no uniquely matching class member found for template < F > void aims::ConvolutionFilter< F >::setBasisFunction(const F &func) Possible candidates: 'void aims::ConvolutionFilter< BasisFunction >::setBasisFunction(const BasisFunction &func)' at line 97 of file /casa/host/build/include/aims/signalfilter/convolutionfilter.h 'void aims::ConvolutionFilter< BasisFunction >::setBasisFunction(const std::vector< BasisFunction > &func)' at line 99 of file /casa/host/build/include/aims/signalfilter/convolutionfilter.h /casa/host/build/include/aims/signalfilter/convolutionfilter_d.h:237: warning: no uniquely matching class member found for template < F > void aims::ConvolutionFilter< F >::setBasisFunction(const std::vector< F > &func) Possible candidates: 'void aims::ConvolutionFilter< BasisFunction >::setBasisFunction(const BasisFunction &func)' at line 97 of file /casa/host/build/include/aims/signalfilter/convolutionfilter.h 'void aims::ConvolutionFilter< BasisFunction >::setBasisFunction(const std::vector< BasisFunction > &func)' at line 99 of file /casa/host/build/include/aims/signalfilter/convolutionfilter.h /casa/host/build/include/aims/signalfilter/elementfilterfactory_d.h:58: warning: no uniquely matching class member found for template < T > void aims::ElementFilterFactory::init() /casa/host/build/include/aims/signalfilter/elementfilterfactory_d.h:85: warning: no uniquely matching class member found for template < T > std::map< std::string, carto::rc_ptr< ElementFilteringImageAlgorithm< T > > > & aims::ElementFilterFactory::_map() /casa/host/build/include/aims/signalfilter/elementfilterfactory_d.h:92: warning: documented symbol 'void aims::ElementFilterFactory::registerFilter' was not declared or defined. /casa/host/build/include/aims/signalfilter/elementfilterfactory_d.h:102: warning: no uniquely matching class member found for template < T > std::set< std::string > aims::ElementFilterFactory::names() /casa/host/build/include/aims/signalfilter/elementfilterfactory_d.h:113: warning: no uniquely matching class member found for template < T > ElementFilteringImageAlgorithm< T > * aims::ElementFilterFactory::create(const std::string &name, const StructuringElement &strel, carto::Object options) /casa/host/build/include/aims/signalfilter/elementfilterfactory_d.h:131: warning: no uniquely matching class member found for template < T > ElementFilteringImageAlgorithm< T > * aims::ElementFilterFactory::create(const std::string &name, carto::Object options) /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:142: warning: no uniquely matching class member found for template < T > T aims::MaxFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:148: warning: no uniquely matching class member found for template < T > T aims::MaxFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:161: warning: no uniquely matching class member found for template < T > T aims::MinFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:167: warning: no uniquely matching class member found for template < T > T aims::MinFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:180: warning: no uniquely matching class member found for template < T > T aims::MedianFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:186: warning: no uniquely matching class member found for template < T > T aims::MedianFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:199: warning: no uniquely matching class member found for template < T > T aims::NotNullMedianFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:205: warning: no uniquely matching class member found for template < T > T aims::NotNullMedianFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:218: warning: no uniquely matching class member found for template < T > T aims::MeanFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:224: warning: no uniquely matching class member found for template < T > T aims::MeanFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:237: warning: no uniquely matching class member found for template < T > T aims::NotNullMeanFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:243: warning: no uniquely matching class member found for template < T > T aims::NotNullMeanFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:256: warning: no uniquely matching class member found for template < T > T aims::MajorityFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:262: warning: no uniquely matching class member found for template < T > T aims::MajorityFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:275: warning: no uniquely matching class member found for template < T > T aims::NotNullMajorityFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:281: warning: no uniquely matching class member found for template < T > T aims::NotNullMajorityFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:294: warning: no uniquely matching class member found for template < T > T aims::ExtremaDifferenceFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:300: warning: no uniquely matching class member found for template < T > T aims::ExtremaDifferenceFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:313: warning: no uniquely matching class member found for template < T > T aims::SumFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:319: warning: no uniquely matching class member found for template < T > T aims::SumFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:332: warning: no uniquely matching class member found for template < T > T aims::VarFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:338: warning: no uniquely matching class member found for template < T > T aims::VarFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:351: warning: no uniquely matching class member found for template < T > T aims::StDevFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/filteringfunction_element_d.h:357: warning: no uniquely matching class member found for template < T > T aims::StDevFilterFunc::execute(const carto::VolumeRef< T > &volume, const carto::rc_ptr< StructuringElement > &se) const /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h:125: warning: documented symbol 'aims::GaborFilterFunc::GaborFilterFunc' was not declared or defined. /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h:141: warning: documented symbol 'aims::GaborFilterFunc::~GaborFilterFunc' was not declared or defined. /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h:145: warning: no uniquely matching class member found for template < T > GaborFilterFunc< T > & aims::GaborFilterFunc::operator=(const GaborFilterFunc< T > &other) /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h:164: warning: no uniquely matching class member found for template < T > void aims::GaborFilterFunc::setOptions(const carto::Object &options) /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h:214: warning: no uniquely matching class member found for template < T > void aims::GaborFilterFunc::updateOptions(const carto::Object &options) /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h:291: warning: no uniquely matching class member found for template < T > const std::vector< int > & aims::GaborFilterFunc::getAmplitude() const /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h:297: warning: no matching file member found for void aims::GaborFilterFunc::setKernel Possible candidates: 'void setKernel()' at line 150 of file /casa/host/build/include/aims/signalfilter/filteringfunction_linear.h /casa/host/build/include/aims/signalfilter/filteringfunction_linear_d.h:357: warning: no uniquely matching class member found for template < T > T aims::GaborFilterFunc::execute(const carto::VolumeRef< T > &volume) const /casa/host/build/include/aims/signalfilter/linearfilterfactory_d.h:46: warning: no uniquely matching class member found for template < T > void aims::LinearFilterFactory::init() /casa/host/build/include/aims/signalfilter/linearfilterfactory_d.h:58: warning: no uniquely matching class member found for template < T > std::map< std::string, carto::rc_ptr< LinearFilteringImageAlgorithm< T > > > & aims::LinearFilterFactory::_map() /casa/host/build/include/aims/signalfilter/linearfilterfactory_d.h:65: warning: documented symbol 'void aims::LinearFilterFactory::registerFilter' was not declared or defined. /casa/host/build/include/aims/signalfilter/linearfilterfactory_d.h:75: warning: no uniquely matching class member found for template < T > std::set< std::string > aims::LinearFilterFactory::names() /casa/host/build/include/aims/signalfilter/linearfilterfactory_d.h:86: warning: no uniquely matching class member found for template < T > LinearFilteringImageAlgorithm< T > * aims::LinearFilterFactory::create(const std::string &name, carto::Object options) /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:48,841::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'. aimsgui.tag', location '../../aimsgui-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/aimsdata-5.2/doxygen/aimsdata.tag', location '../../aimsdata-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/graph-5.2/doxygen/graph.tag', location '../../graph-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/cartobase-5.2/doxygen/cartobase.tag', location '../../cartobase-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/soma-io-5.2/doxygen/soma-io.tag', location '../../cartobase-5.2/doxygen'... Reading tag file '/casa/host/build/share/doc/cartodata-5.2/doxygen/cartodata.tag', location '../../cartodata-5.2/doxygen'... Parsing files Preprocessing /casa/host/build/include/anatomist/application/anatomistinfo.h... Parsing file /casa/host/build/include/anatomist/application/anatomistinfo.h... Preprocessing /casa/host/build/include/anatomist/application/Anatomist.h... Parsing file /casa/host/build/include/anatomist/application/Anatomist.h... Preprocessing /casa/host/build/include/anatomist/application/globalConfig.h... Parsing file /casa/host/build/include/anatomist/application/globalConfig.h... Preprocessing /casa/host/build/include/anatomist/application/localConfig.h... Parsing file /casa/host/build/include/anatomist/application/localConfig.h... Preprocessing /casa/host/build/include/anatomist/application/settings.h... Parsing file /casa/host/build/include/anatomist/application/settings.h... Preprocessing /casa/host/build/include/anatomist/application/module.h... Parsing file /casa/host/build/include/anatomist/application/module.h... Preprocessing /casa/host/build/include/anatomist/application/fileDialog.h... Parsing file /casa/host/build/include/anatomist/application/fileDialog.h... Preprocessing /casa/host/build/include/anatomist/application/filedialogextension.h... Parsing file /casa/host/build/include/anatomist/application/filedialogextension.h... Preprocessing /casa/host/build/include/anatomist/application/syntax.h... Parsing file /casa/host/build/include/anatomist/application/syntax.h... Preprocessing /casa/host/build/include/anatomist/application/listDir.h... Parsing file /casa/host/build/include/anatomist/application/listDir.h... Preprocessing /casa/host/build/include/anatomist/application/anatomist_doc.h... Parsing file /casa/host/build/include/anatomist/application/anatomist_doc.h... Preprocessing /casa/host/build/include/anatomist/browser/browsercontrol.h... Parsing file /casa/host/build/include/anatomist/browser/browsercontrol.h... Preprocessing /casa/host/build/include/anatomist/browser/labeledit.h... Parsing file /casa/host/build/include/anatomist/browser/labeledit.h... Preprocessing /casa/host/build/include/anatomist/browser/attributedchooser.h... Parsing file /casa/host/build/include/anatomist/browser/attributedchooser.h... Preprocessing /casa/host/build/include/anatomist/browser/stringEdit.h... Parsing file /casa/host/build/include/anatomist/browser/stringEdit.h... Preprocessing /casa/host/build/include/anatomist/browser/attDescr.h... Parsing file /casa/host/build/include/anatomist/browser/attDescr.h... Preprocessing /casa/host/build/include/anatomist/browser/qObjBrowserWid.h... Parsing file /casa/host/build/include/anatomist/browser/qObjBrowserWid.h... Preprocessing /casa/host/build/include/anatomist/browser/qwObjectBrowser.h... Parsing file /casa/host/build/include/anatomist/browser/qwObjectBrowser.h... Preprocessing /casa/host/build/include/anatomist/bucket/Bucket.h... Parsing file /casa/host/build/include/anatomist/bucket/Bucket.h... Preprocessing /casa/host/build/include/anatomist/color/colortraits.h... Parsing file /casa/host/build/include/anatomist/color/colortraits.h... Preprocessing /casa/host/build/include/anatomist/color/minipalette.h... Parsing file /casa/host/build/include/anatomist/color/minipalette.h... 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Preprocessing /casa/host/build/include/anatomist/color/wMaterial.h... Parsing file /casa/host/build/include/anatomist/color/wMaterial.h... Preprocessing /casa/host/build/include/anatomist/color/wObjPalette.h... Parsing file /casa/host/build/include/anatomist/color/wObjPalette.h... Preprocessing /casa/host/build/include/anatomist/color/wRendering.h... Parsing file /casa/host/build/include/anatomist/color/wRendering.h... Preprocessing /casa/host/build/include/anatomist/commands/cActivateAction.h... Parsing file /casa/host/build/include/anatomist/commands/cActivateAction.h... Preprocessing /casa/host/build/include/anatomist/commands/cAddObject.h... Parsing file /casa/host/build/include/anatomist/commands/cAddObject.h... Preprocessing /casa/host/build/include/anatomist/commands/cApplyBuiltinReferential.h... Parsing file /casa/host/build/include/anatomist/commands/cApplyBuiltinReferential.h... Preprocessing /casa/host/build/include/anatomist/commands/cAskTexExtrema.h... Parsing file /casa/host/build/include/anatomist/commands/cAskTexExtrema.h... Preprocessing /casa/host/build/include/anatomist/commands/cAssignReferential.h... Parsing file /casa/host/build/include/anatomist/commands/cAssignReferential.h... Preprocessing /casa/host/build/include/anatomist/commands/cCamera.h... Parsing file /casa/host/build/include/anatomist/commands/cCamera.h... Preprocessing /casa/host/build/include/anatomist/commands/cChangePalette.h... Parsing file /casa/host/build/include/anatomist/commands/cChangePalette.h... Preprocessing /casa/host/build/include/anatomist/commands/cControlsParams.h... Parsing file /casa/host/build/include/anatomist/commands/cControlsParams.h... Preprocessing /casa/host/build/include/anatomist/commands/cClosePipe.h... Parsing file /casa/host/build/include/anatomist/commands/cClosePipe.h... Preprocessing /casa/host/build/include/anatomist/commands/cCloseWindow.h... Parsing file /casa/host/build/include/anatomist/commands/cCloseWindow.h... 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Parsing file /casa/host/build/include/anatomist/commands/cSaveTransformation.h... Preprocessing /casa/host/build/include/anatomist/commands/cSaveTransformationGraph.h... Parsing file /casa/host/build/include/anatomist/commands/cSaveTransformationGraph.h... Preprocessing /casa/host/build/include/anatomist/commands/cSelect.h... Parsing file /casa/host/build/include/anatomist/commands/cSelect.h... Preprocessing /casa/host/build/include/anatomist/commands/cSelectByHierarchy.h... Parsing file /casa/host/build/include/anatomist/commands/cSelectByHierarchy.h... Preprocessing /casa/host/build/include/anatomist/commands/cServer.h... Parsing file /casa/host/build/include/anatomist/commands/cServer.h... Preprocessing /casa/host/build/include/anatomist/commands/cSetControl.h... Parsing file /casa/host/build/include/anatomist/commands/cSetControl.h... Preprocessing /casa/host/build/include/anatomist/commands/cSetMaterial.h... Parsing file /casa/host/build/include/anatomist/commands/cSetMaterial.h... Preprocessing /casa/host/build/include/anatomist/commands/cSetObjectPalette.h... Parsing file /casa/host/build/include/anatomist/commands/cSetObjectPalette.h... Preprocessing /casa/host/build/include/anatomist/commands/cShowObject.h... Parsing file /casa/host/build/include/anatomist/commands/cShowObject.h... Preprocessing /casa/host/build/include/anatomist/commands/cSliceParams.h... Parsing file /casa/host/build/include/anatomist/commands/cSliceParams.h... Preprocessing /casa/host/build/include/anatomist/commands/cTexturingParams.h... Parsing file /casa/host/build/include/anatomist/commands/cTexturingParams.h... Preprocessing /casa/host/build/include/anatomist/commands/cWindowBlock.h... Parsing file /casa/host/build/include/anatomist/commands/cWindowBlock.h... Preprocessing /casa/host/build/include/anatomist/commands/cWindowConfig.h... Parsing file /casa/host/build/include/anatomist/commands/cWindowConfig.h... 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Parsing file /casa/host/build/include/anatomist/control/toolTips-qt.h... Preprocessing /casa/host/build/include/anatomist/control/wcontrolevents.h... Parsing file /casa/host/build/include/anatomist/control/wcontrolevents.h... Preprocessing /casa/host/build/include/anatomist/control/wControl.h... Parsing file /casa/host/build/include/anatomist/control/wControl.h... Preprocessing /casa/host/build/include/anatomist/control/winconfigio.h... Parsing file /casa/host/build/include/anatomist/control/winconfigio.h... Preprocessing /casa/host/build/include/anatomist/control/wPreferences.h... Parsing file /casa/host/build/include/anatomist/control/wPreferences.h... Preprocessing /casa/host/build/include/anatomist/control/whatsNew.h... Parsing file /casa/host/build/include/anatomist/control/whatsNew.h... Preprocessing /casa/host/build/include/anatomist/controler/action.h... Parsing file /casa/host/build/include/anatomist/controler/action.h... 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[100%] pyanatomist_addons /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/utility/dynamic.h:95: warning: Found unknown command '\function' /casa/host/build/include/aims/utility/dynamic.h:41: warning: Found unknown command '\function' generating indices... genindex file /casa/host/build/include/aims/topology/connectivity26.h... Preprocessing /casa/host/build/include/aims/topology/connectivity6.h... Parsing file /casa/host/build/include/aims/topology/connectivity6.h... Preprocessing /casa/host/build/include/aims/topology/relation.h... Parsing file /casa/host/build/include/aims/topology/relation.h... Preprocessing /casa/host/build/include/aims/topology/topoBase.h... Parsing file /casa/host/build/include/aims/topology/topoBase.h... 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Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating code for file aims/algorithm/imagpy-modindex done copying linked files... copying notebooks ... highlighting module code... [ 6%] _thread highlighting module code... [ 13%] anatomist highlighting module code... [ 20%] anatomist.base highlighting module code... [ 26%] anatomist.cpp highlighting module code... [ 33%] anatomist.cpp.followerobject highlighting module code... [ 40%] anatomist.cpp.paletteEditor highlighting module code... [ 46%] anatomist.cpp.palettecontrastaction highlighting module code... [ 53%] anatomist.cpp.simplecontrols highlighting module code... [ 60%] anatomist.direct.api highlighting module code... [ 66%] anatomist.headless highlighting module code... [ 73%] anatomist.notebook.api highlighting module code... [ 80%] anatomist.snapshot highlighting module code... [ 86%] anatomist.socket.api highlighting module code... [ 93%] anatomist.threaded.api highlighting module code... [100%] anatomist.threadedimpl writing additional pages... search done copying images... [100%] anatomist.png copying downloadable files... [ 1%] ../../../../../../build/build_files/anatomist-gpl/pyanatomist/auto_examples/activateaction.ipynb copying downloadable files... [ 3%] ../../../../../../build/build_files/anatomist-gpl/pyanatomist/auto_examples/activateaction.py copying downloadable files... 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[ 8%] sphere.html embedding documentation hyperlinks for auto_examples... [ 12%] aimsvolumetest.html embedding documentation hyperlinks for auto_examples... [ 16%] ellipsoid.html embedding documentation hyperlinks for auto_examples... [ 20%] texturedrawing.html embedding documentation hyperlinks for auto_examples... [ 24%] control.html embedding documentation hyperlinks for auto_examples... [ 28%] index.html embedding documentation hyperlinks for auto_examples... [ 32%] volumetest.html embedding documentation hyperlinks for auto_examples... [ 36%] meshtest.html embedding documentation hyperlinks for auto_examples... [ 40%] selection.html embedding documentation hyperlinks for auto_examples... [ 44%] graph_building.html embedding documentation hyperlinks for auto_examples... [ 48%] activateaction.html embedding documentation hyperlinks for auto_examples... [ 52%] anaevensimplerviewer.html embedding documentation hyperlinks for auto_examples... [ 56%] fusion.html embedding documentation hyperlinks for auto_examples... [ 60%] events.html embedding documentation hyperlinks for auto_examples... [ 64%] volumeMeasures.html embedding documentation hyperlinks for auto_examples... [ 68%] customcommands.html embedding documentation hyperlinks for auto_examples... [ 72%] sg_execution_times.html embedding documentation hyperlinks for auto_examples... [ 76%] addMenuEntry.html embedding documentation hyperlinks for auto_examples... [ 80%] customopenglobject.html embedding documentation hyperlinks for auto_examples... [ 84%] anatomistapiTests.html embedding documentation hyperlinks for auto_examples... [ 88%] bvProcessSocket.html embedding documentation hyperlinks for auto_examples... [ 92%] nomenclatureselection.html embedding documentation hyperlinks for auto_examples... [ 96%] graph.html embedding documentation hyperlinks for auto_examples... [100%] fusion3D.html build succeeded, 27 warnings. The HTML pages are in ../../../share/doc/pyanatomist-5.2/sphinx. PyAnatomist Module present PythonLauncher::runModules() ealgorithm.h... Generating code for file aims/classification/classifstrategy.h... Generating code for file aims/classification/classifstrategy_d.h... Generating code for file aims/classification/distance.h... Generating code for file aims/classification/distance_d.h... Generating code for file aims/classification/dynamicstrategy.h... Generating code for file aims/classification/dynamicstrategy_d.h... Generating code for file aims/classification/individuals.h... Generating code for file aims/classification/individuals_d.h... Generating code for file aims/classification/iterativeclassification.h... Generating code for file aims/classification/iterativeclassification_d.h... Generating code for file aims/classification/kmeansstrategy.h... Generating code for file aims/classification/kmeansstrategy_d.h... Generating code for file aims/classification/mixtureOfPpca.h... Generating code for file aims/classification/mixtureOfPpca_d.h... Generating code for file aims/classification/pcastrategy.h... Generating code for file aims/classification/pcastrategy_d.h... Generating code for file aims/classification/softDecSimilarityCompAnalysis.h... Generating code for file aims/compression/compression_g.h... Generating code for file aims/compression/huffman.h... Generating code for file aims/compression/lz.h... Generating code for file aims/compression/lzhl.h... Generating code for file aims/config/aimsalgo_config.h... Generating code for file aims/connectivity/meshcc.h... Generating code for file aims/connectivity/meshcc_d.h... Generating code for file aims/distancemap/advection.h... Generating code for file aims/distancemap/chamfer.h... Generating code for file aims/distancemap/danielsson.h... Generating code for file aims/distancemap/distancemap_g.h... Generating code for file aims/distancemap/downpath.h... Generating code for file aims/distancemap/fastmarching.h... Generating code for file aims/distancemap/front.h... Generating code for file aims/distancemap/mask.h... Generating code for file aims/distancemap/meshdistance.h... Generating code for file aims/distancemap/meshdistance_d.h... Generating code for file aims/distancemap/meshmorphomat.h... Generating code for file aims/distancemap/meshmorphomat_d.h... Generating code for file aims/distancemap/meshparcellation.h... Generating code for file aims/distancemap/meshparcellation_d.h... Generating code for file aims/distancemap/meshvoronoi.h... Generating code for file aims/distancemap/meshvoronoi_d.h... Generating code for file aims/distancemap/projection.h... Generating code for file aims/distancemap/stlsort.h... Generating code for file aims/distancemap/thickness.h... Generating code for file aims/distancemap/voronoi.h... Generating code for file aims/estimation/estimation_g.h... Generating code for file aims/estimation/gmlfunc.h... Generating code for file aims/estimation/lms-estimator.h... Generating code for file aims/estimation/m-estimator.h... Generating code for file aims/estimation/m-func.h... Generating code for file aims/estimation/medfunc.h... Generating code for file aims/pyramid/medfunc.h... Generating code for file aims/estimation/msfunc.h... Generating code for file aims/estimation/wlms-estimator.h... Generating code for file aims/fastComputation/tabulation.h... Generating code for file aims/ffd/tabulSpline.h... Generating code for file aims/fibers/fiberDistance.h... Generating code for file aims/foldgraph/foldgraphattributes.h... Generating code for file aims/foldgraph/foldoversegmentation.h... Generating code for file aims/geodesicpath/geodesic_algorithm_base.h... Generating code for file aims/geodesicpath/geodesic_algorithm_dijkstra.h... Generating code for file aims/geodesicpath/geodesic_algorithm_dijkstra_alternative.h... Generating code for file aims/geodesicpath/geodesic_algorithm_exact.h... Generating code for file aims/geodesicpath/geodesic_algorithm_exact_elements.h... Generating code for file aims/geodesicpath/geodesic_algorithm_graph_base.h... Generating code for file aims/geodesicpath/geodesic_algorithm_subdivision.h... Generating code for file aims/geodes[ 92%] Generating AimsApplyTransform help file ... [ 92%] Generating AimsApplyVectorField help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:49,370::INFO::Pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.png'. [ 92%] Generating AimsBuildDti help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:49,412::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'. <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_iterator::const_iterator() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_iterator::const_iterator(carto::VolumeRef< T > vol, int y, int z, int t) <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_iterator::const_iterator(iterator other) <unknown>:1: warning: no uniquely matching class member found for const std::pair< Point4d, const_LowLevelStorage > & aims::SparseVolume< carto::Volume< T > >::const_iterator::operator*() const <unknown>:1: warning: no uniquely matching class member found for const std::pair< Point4d, const_LowLevelStorage > * aims::SparseVolume< carto::Volume< T > >::const_iterator::operator->() const <unknown>:1: warning: documented symbol 'const const_LowLevelStorage & aims::SparseVolume< carto::Volume< T > >::const_iterator::storage' was not declared or defined. <unknown>:1: warning: no uniquely matching class member found for bool aims::SparseVolume< carto::Volume< T > >::const_iterator::operator==(const const_iterator &x) const <unknown>:1: warning: no uniquely matching class member found for bool aims::SparseVolume< carto::Volume< T > >::const_iterator::operator!=(const const_iterator &x) const <unknown>:1: warning: no uniquely matching class member found for const_iterator & aims::SparseVolume< carto::Volume< T > >::const_iterator::operator++() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::const_LowLevelStorage() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::const_LowLevelStorage(const carto::VolumeRef< T > vol, int y, int z, int t) <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::const_LowLevelStorage(const LowLevelStorage &other) <unknown>:1: warning: no uniquely matching class member found for const_iterator aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::begin() const <unknown>:1: warning: no uniquely matching class member found for const_iterator aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::end() const <unknown>:1: warning: no uniquely matching class member found for carto::VolumeRef< T > aims::SparseVolume< carto::Volume< T > >::const_LowLevelStorage::volume() const <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::iterator::iterator() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::iterator::iterator(carto::VolumeRef< T > vol, int y, int z, int t) <unknown>:1: warning: no uniquely matching class member found for std::pair< Point4d, LowLevelStorage > & aims::SparseVolume< carto::Volume< T > >::iterator::operator*() <unknown>:1: warning: no uniquely matching class member found for std::pair< Point4d, LowLevelStorage > * aims::SparseVolume< carto::Volume< T > >::iterator::operator->() <unknown>:1: warning: documented symbol 'LowLevelStorage & aims::SparseVolume< carto::Volume< T > >::iterator::storage' was not declared or defined. <unknown>:1: warning: no uniquely matching class member found for bool aims::SparseVolume< carto::Volume< T > >::iterator::operator==(const iterator &x) const <unknown>:1: warning: no uniquely matching class member found for bool aims::SparseVolume< carto::Volume< T > >::iterator::operator!=(const iterator &x) const <unknown>:1: warning: no uniquely matching class member found for iterator & aims::SparseVolume< carto::Volume< T > >::iterator::operator++() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::LowLevelStorage() <unknown>:1: warning: no uniquely matching class member found for aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::LowLevelStorage(carto::VolumeRef< T > vol, int y, int z, int t) <unknown>:1: warning: no uniquely matching class member found for iterator aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::begin() <unknown>:1: warning: no uniquely matching class member found for const_iterator aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::begin() const <unknown>:1: warning: no uniquely matching class member found for iterator aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::end() <unknown>:1: warning: no uniquely matching class member found for const_iterator aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::end() const <unknown>:1: warning: no uniquely matching class member found for carto::VolumeRef< T > aims::SparseVolume< carto::Volume< T > >::LowLevelStorage::volume() const icpath/geodesic_constants_and_simple_functions.h... Generating code for file aims/geodesicpath/geodesic_memory.h... Generating code for file aims/geodesicpath/geodesic_mesh.h... Generating code for file aims/geodesicpath/geodesic_mesh_elements.h... Generating code for file aims/geodesicpath/geodesicPath.h... Generating code for file aims/histogram/cumulated.h... Generating code for file aims/histogram/equalizedHisto.h... Generating code for file aims/histogram/histogram.h... Generating code for file aims/histogram/histogram_g.h... Generating code for file aims/histogram/regularBinnedHisto.h... Generating code for file aims/histogram/simpleHisto.h... Generating code for file aims/information/information.h... Generating code for file aims/information/pdf.h... Generating code for file aims/interpolation/interpolatedvolume.h... Generating code for file aims/interpolation/interpolatedvolume_d.h... Generating code for file aims/io/roigtmR.h... Generating code for file aims/io/roigtmW.h... Generating code for file aims/io/roiselectorR.h... Generating code for file aims/math/balanc.h... Generating code for file aims/math/balbak.h... Generating code for file aims/math/bessel.h... Generating code for file aims/math/bspline.h... Generating code for file aims/math/bspline2.h... Generating code for file aims/math/bspline3.h... Generating code for file aims/math/curv2Diso.h... Generating code for file aims/math/curv3Diso.h... Generating code for file aims/math/discriminantanalysis.h... Generating code for file aims/math/discriminantanalysis_d.h... Generating code for file aims/math/distspheric.h... Generating code for file aims/math/eigen.h... Generating code for file aims/math/elmhes.h... Generating code for file aims/math/eltran.h... Generating code for file aims/math/gaussj.h... Generating code for file aims/math/geometry.h... Generating code for file aims/math/gradient.h... Generating code for file aims/math/harris.h... Generating code for file aims/math/householder.h... Generating code for file aims/math/hqr.h... Generating code for file aims/math/hypergeometric.h... Generating code for file aims/math/knn.h... Generating code for file aims/math/math_g.h... Generating code for file aims/math/multilinfit.h... Generating code for file aims/math/pca.h... Generating code for file aims/math/pca_d.h... Generating code for file aims/math/ppca.h... Generating code for file aims/math/ppca_d.h... Generating code for file aims/math/random.h... Generating code for file aims/math/sobel.h... Generating code for file aims/math/svd.h... Generating code for file aims/math/tensorMatrix.h... Generating code for file aims/math/tqli.h... Generating code for file aims/mesh/curv.h... Generating code for file aims/mesh/facet.h... Generating code for file aims/mesh/geometric.h... Generating code for file aims/mesh/inflate.h... Generating code for file aims/mesh/mesh_g.h... Generating code for file aims/mesh/mesh_graph.h... Generating code for file aims/mesh/mesh_graph_d.h... Generating code for file aims/mesh/mesher.h... Generating code for file aims/mesh/meshinterpoler.h... Generating code for file aims/mesh/meshinterpoler_d.h... Generating code for file aims/mesh/meshinterpoler_p.h... Generating code for file aims/mesh/meshwatershed.h... Generating code for file aims/moment/geomMoment.h... Generating code for file aims/moment/momBase.h... Generating code for file aims/moment/moment.h... Generating code for file aims/moment/moment_g.h... Generating code for file aims/moment/momFactory.h... Generating code for file aims/moment/momIncStgy.h... Generating code for file aims/moment/momInvariant.h... Generating code for file aims/moment/momNormStgy.h... Generating code for file aims/moment/momStgy.h... Generating code for file aims/moment/momSurfStgy.h... Generating code for file aims/moment/momTriFactory.h... Generating code for file aims/moment/momTriStgy.h... Generating code for file aims/moment/momVolStgy.h... Generating code for file aims/moment/triMoment.h... Generating code for file aims/morphology/morphogreylevel_d.h... Generating code for file aims/m/casa/host/build/include/anatomist/graph/AGraphIterator.h:109: warning: no matching class member found for anatomist::AGraphIterator::AGraphIterator(const AGraphIterator::datatype::iterator &thing) Possible candidates: 'anatomist::AGraphIterator::AGraphIterator(const datatype::iterator &thing)' 'anatomist::AGraphIterator::AGraphIterator(const AGraphIterator &other)' /casa/host/build/include/anatomist/graph/AGraphIterator.h:181: warning: no matching class member found for anatomist::const_AGraphIterator::const_AGraphIterator(const const_AGraphIterator::datatype::const_iterator &thing) Possible candidates: 'anatomist::const_AGraphIterator::const_AGraphIterator(const datatype::const_iterator &thing)' 'anatomist::const_AGraphIterator::const_AGraphIterator(const const_AGraphIterator &other)' /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:49,454::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:49,533::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'. orphology/morphology_g.h... Generating code for file aims/morphology/operatormorpho.h... Generating code for file aims/mpi/types.h... Generating code for file aims/signalfilter/types.h... Generating code for file aims/optimization/covsrt.h... Generating code for file aims/optimization/deterministic.h... Generating code for file aims/optimization/levmrq.h... Generating code for file aims/optimization/lm2gauss.h... Generating code for file aims/optimization/lmfunc.h... Generating code for file aims/optimization/lmgamma.h... Generating code for file aims/optimization/lmgauss.h... Generating code for file aims/optimization/objective.h... Generating code for file aims/optimization/optimization_g.h... Generating code for file aims/optimization/optimizer.h... Generating code for file aims/optimization/powell.h... Generating code for file aims/optimization/singleoptimizer.h... Generating code for file aims/points_distribution/points_distribution.h... Generating code for file aims/primalsketch/coupledDiffusion2DSmoother.h... Generating code for file aims/primalsketch/coupledDiffusion2DSmoother_d.h... Generating code for file aims/primalsketch/coupledSmoother.h... Generating code for file aims/primalsketch/dericheSmoother.h... Generating code for file aims/primalsketch/dericheSmoother_d.h... Generating code for file aims/primalsketch/finiteElementSmoother.h... Generating code for file aims/primalsketch/finiteElementSmoother_d.h... Generating code for file aims/primalsketch/greyLevelBlob.h... Generating code for file aims/primalsketch/imageCoupledSmoother.h... Generating code for file aims/primalsketch/imageSmoother.h... Generating code for file aims/primalsketch/peronaMalikSmoother.h... Generating code for file aims/primalsketch/peronaMalikSmoother_d.h... Generating code for file aims/primalsketch/primalSketch.h... Generating code for file aims/primalsketch/primalSketch2graph.h... Generating code for file aims/primalsketch/primalSketchUtil.h... Generating code for file aims/primalsketch/scaleLevel.h... Generating code for file aims/primalsketch/scalespace.h... Generating code for file aims/primalsketch/scaleSpaceBlob.h... Generating code for file aims/primalsketch/smoother.h... Generating code for file aims/primalsketch/surfaceSmoother.h... Generating code for file aims/pyramid/convolutionsubsampler.h... Generating code for file aims/pyramid/convolutionsubsampler_d.h... Generating code for file aims/pyramid/maxfunc.h... Generating code for file aims/pyramid/meanfunc.h... Generating code for file aims/pyramid/movingaveragesubsampler.h... Generating code for file aims/pyramid/pyr-func.h... Generating code for file aims/pyramid/pyramid.h... Generating code for file aims/pyramid/pyramid_g.h... Generating code for file aims/pyramid/splinepyramid.h... Generating code for file aims/pyramid/splinepyramid_d.h... Generating code for file aims/pyramid/splinesubsampler.h... Generating code for file aims/pyramid/splinesubsampler_d.h... Generating code for file aims/pyramid/subsamplingpyramid.h... Generating code for file aims/pyramid/subsamplingpyramid_d.h... Generating code for file aims/registration/block_matching.h... Generating code for file aims/registration/block_matching_d.h... Generating code for file aims/registration/displacement_field.h... Generating code for file aims/registration/displacement_field_d.h... Generating code for file aims/registration/ffd.h... Generating code for file aims/registration/minimisation.h... Generating code for file aims/registration/minimisation_d.h... Generating code for file aims/registration/scale_control.h... Generating code for file aims/registration/scale_control_d.h... Generating code for file aims/registration/transformation.h... Generating code for file aims/registration/transformation_d.h... Generating code for file aims/resampling/bucketmapsampler.h... Generating code for file aims/resampling/cubicresampler.h... Generating code for file aims/resampling/cubicresampler_d.h... Generating code for file aims/resampling/extremadifferencesubsampling.h... Generating code for file aims/resampling/genera/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:49,575::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'. lsampler.h... Generating code for file aims/resampling/harmonicCageResampler.h... Generating code for file aims/resampling/linearresampler.h... Generating code for file aims/resampling/linearresampler_d.h... Generating code for file aims/resampling/majoritylabelresampler.h... Generating code for file aims/resampling/majoritylabelresampler_d.h... Generating code for file aims/resampling/majoritysubsampling.h... Generating code for file aims/resampling/masklinresampler.h... Generating code for file aims/resampling/masklinresampler_d.h... Generating code for file aims/resampling/maxsubsampling.h... Generating code for file aims/resampling/meansubsampling.h... Generating code for file aims/resampling/medianresampler.h... Generating code for file aims/resampling/medianresampler_d.h... Generating code for file aims/resampling/mediansubsampling.h... Generating code for file aims/resampling/meshToVoxelsResampler.h... Generating code for file aims/resampling/meshToVoxelsResampler_d.h... Generating code for file aims/resampling/minsubsampling.h... Generating code for file aims/resampling/nearestneighborresampler.h... Generating code for file aims/resampling/nearestneighborresampler_d.h... Generating code for file aims/resampling/notnullmeansubsampling.h... Generating code for file aims/resampling/notnullmediansubsampling.h... Generating code for file aims/resampling/polynomial.h... Generating code for file aims/resampling/quadraticresampler.h... Generating code for file aims/resampling/quadraticresampler_d.h... Generating code for file aims/resampling/quarticresampler.h... Generating code for file aims/resampling/quarticresampler_d.h... Generating code for file aims/resampling/quinticresampler.h... Generating code for file aims/resampling/quinticresampler_d.h... Generating code for file aims/resampling/resampler.h... Generating code for file aims/resampling/resampler_d.h... Generating code for file aims/resampling/resamplerfactory.h... Generating code for file aims/resampling/resamplerfactory_d.h... Generating code for file aims/resampling/resampling_g.h... Generating code for file aims/resampling/samplable.h... Generating code for file aims/resampling/samplable_cone.h... Generating code for file aims/resampling/samplable_sphere.h... Generating code for file aims/resampling/sampler.h... Generating code for file aims/resampling/seventhorderresampler.h... Generating code for file aims/resampling/seventhorderresampler_d.h... Generating code for file aims/resampling/sixthorderresampler.h... Generating code for file aims/resampling/sixthorderresampler_d.h... Generating code for file aims/resampling/splineresampler.h... Generating code for file aims/resampling/splineresampler_d.h... Generating code for file aims/resampling/subsamplingimagealgorithm.h... Generating code for file aims/resampling/sumsubsampling.h... Generating code for file aims/roi/clusterArg.h... Generating code for file aims/roi/clusterArg_d.h... Generating code for file aims/roi/roigtm.h... Generating code for file aims/roi/roiselector.h... Generating code for file aims/roi/roistat.h... Generating code for file aims/scalespace/bucketblob.h... Generating code for file aims/scalespace/bucketblob_d.h... Generating code for file aims/scalespace/meshBlob.h... Generating code for file aims/scalespace/meshDiffuse.h... Generating code for file aims/signalfilter/convol.h... Generating code for file aims/signalfilter/convolutionfilter.h... Generating code for file aims/signalfilter/convolutionfilter_d.h... Generating code for file aims/signalfilter/differencefilter.h... Generating code for file aims/signalfilter/diffusionSmoother.h... Generating code for file aims/signalfilter/diffusionSmoother_d.h... Generating code for file aims/signalfilter/elementfilterfactory.h... Generating code for file aims/signalfilter/elementfilterfactory_d.h... Generating code for file aims/signalfilter/filteringfunction.h... Generating code for file aims/signalfilter/filteringfunction_element.h... Generating code for file aims/signalfilter/filteringfunction_element_d.h... Generating code for file aims/signalfilter/filteringfunction_element_rgb.h... Generating code for file aims/signalfilter/filteringfunction_element_rgb_d.h... Generating code for file aims/signalfilter/filteringfunction_linear.h... Generating code for file aims/signalfilter/filteringfunction_linear_d.h... Generating code for file aims/signalfilter/filteringfunction_linear_rgb.h... Generating code for file aims/signalfilter/filteringfunction_linear_rgb_d.h... Generating code for file aims/signalfilter/filteringimagealgorithm.h... Generating code for file aims/signalfilter/firfilter.h... Generating code for file aims/signalfilter/g2dsmooth.h... Generating code for file aims/signalfilter/g3dsmooth.h... Generating code for file aims/signalfilter/gaborfilter.h... Generating code for file aims/signalfilter/gcoef.h... Generating code for file aims/signalfilter/gcolumns.h... Generating code for file aims/signalfilter/gframes.h... Generating code for file aims/signalfilter/ggradient.h... Generating code for file aims/signalfilter/ghessian.h... Generating code for file aims/signalfilter/gjacobian.h... Generating code for file aims/signalfilter/glines.h... Generating code for file aims/signalfilter/grecurse.h... Generating code for file aims/signalfilter/gslices.h... Generating code for file aims/signalfilter/iirfilter.h... Generating code for file aims/signalfilter/linearfilterfactory.h... Generating code for file aims/signalfilter/linearfilterfactory_d.h... Generating code for file aims/signalfilter/majorityfilter.h... Generating code for file aims/signalfilter/maxfilter.h... Generating code for file aims/signalfilter/meanfilter.h... Generating code for file aims/signalfilter/medianfilter.h... Generating code for file aims/signalfilter/minfilter.h... Generating code for file aims/signalfilter/movingaveragefilter.h... Generating code for file aims/signalfilter/parity.h... Generating code for file aims/signalfilter/sdfilter.h... Generating code for file aims/signalfilter/signalfilter_g.h... Generating code for file aims/signalfilter/splinefilter.h... Generating code for file aims/signalfilter/splinefilter_d.h... Generating code for file aims/signalfilter/sumfilter.h... Generating code for file aims/signalfilter/variancefilter.h... Generating code for file aims/signalfilter/vfilter.h... Generating code for file aims/spam/spam.h... Generating code for file aims/talairach/cramer.h... Generating code for file aims/talairach/talACPCNorm.h... Generating code for file aims/talairach/talairach.h... Generating code for file aims/talairach/talBoundingBoxPoints.h... Generating code for file aims/talairach/talBox.h... Generating code for file aims/talairach/talBoxBase.h... Generating code for file aims/talairach/talPoints.h... Generating code for file aims/talairach/talVolume.h... Generating code for file aims/threshold/emthreshold.h... Generating code for file aims/topology/adjacency.h... Generating code for file aims/topology/cc18adjacent.h... Generating code for file aims/topology/cc26adjacent.h... Generating code for file aims/topology/cc6adjacent.h... Generating code for file aims/topology/classifMeaning.h... Generating code for file aims/topology/components.h... Generating code for file aims/topology/components18.h... Generating code for file aims/topology/components26.h... Generating code for file aims/topology/connectivity18.h... Generating code for file aims/topology/connectivity26.h... Generating code for file aims/topology/connectivity6.h... Generating code for file aims/topology/relation.h... Generating code for file aims/topology/topoBase.h... Generating code for file aims/topology/topoClassif.h... Generating code for file aims/topology/topoClassifBase.h... Generating code for file aims/topology/topoClassifier.h... Generating code for file aims/topology/topology.h... Generating code for file aims/transform/fft1d.h... Generating code for file aims/transform/hilbert1d.h... Generating code for file aims/transform/least_square_estimation.h... Generating code for file aims/transform/rigidestimation.h... Generating code for file aims/transform/transform_objects.h..warning: Included by graph for 'aimsalgo_config.h' not generated, too many nodes (58), threshold is 50. Consider increasing DOT_GRAPH_MAX_NODES. /casa/host/build/include/anatomist/processor/Registry.h:80: warning: Found unknown command '\Ref' . Generating code for file aims/transform/transform_objects_d.h... Generating code for file aims/utility/dynamic.h... Generating code for file aims/utility/dynamic_d.h... Generating file documentation... Generating docs for file aims/algorithm/imagealgorithm.h... Generating docs for file aims/classification/classifstrategy.h... Generating docs for file aims/classification/classifstrategy_d.h... Generating docs for file aims/classification/distance.h... Generating docs for file aims/classification/distance_d.h... Generating docs for file aims/classification/dynamicstrategy.h... Generating docs for file aims/classification/dynamicstrategy_d.h... Generating docs for file aims/classification/individuals.h... Generating docs for file aims/classification/individuals_d.h... Generating docs for file aims/classification/iterativeclassification.h... Generating docs for file aims/classification/iterativeclassification_d.h... Generating docs for file aims/classification/kmeansstrategy.h... Generating docs for file aims/classification/kmeansstrategy_d.h... Generating docs for file aims/classification/mixtureOfPpca.h... Generating docs for file aims/classification/mixtureOfPpca_d.h... Generating docs for file aims/classification/pcastrategy.h... Generating docs for file aims/classification/pcastrategy_d.h... Generating docs for file aims/classification/softDecSimilarityCompAnalysis.h... Generating docs for file aims/compression/compression_g.h... Generating docs for file aims/compression/huffman.h... Generating docs for file aims/compression/lz.h... Generating docs for file aims/compression/lzhl.h... Generating docs for file aims/config/aimsalgo_config.h... Generating docs for file aims/connectivity/meshcc.h... Generating docs for file aims/connectivity/meshcc_d.h... Generating docs for file aims/distancemap/advection.h... Generating docs for file aims/distancemap/chamfer.h... Generating docs for file aims/distancemap/danielsson.h... Generating docs for file aims/distancemap/distancemap_g.h... Generating docs for file aims/distancemap/downpath.h... Generating docs for file aims/distancemap/fastmarching.h... Generating docs for file aims/distancemap/front.h... Generating docs for file aims/distancemap/mask.h... Generating docs for file aims/distancemap/meshdistance.h... Generating docs for file aims/distancemap/meshdistance_d.h... Generating docs for file aims/distancemap/meshmorphomat.h... Generating docs for file aims/distancemap/meshmorphomat_d.h... Generating docs for file aims/distancemap/meshparcellation.h... Generating docs for file aims/distancemap/meshparcellation_d.h... Generating docs for file aims/distancemap/meshvoronoi.h... Generating docs for file aims/distancemap/meshvoronoi_d.h... Generating docs for file aims/distancemap/projection.h... Generating docs for file aims/distancemap/stlsort.h... Generating docs for file aims/distancemap/thickness.h... Generating docs for file aims/distancemap/voronoi.h... Generating docs for file aims/estimation/estimation_g.h... Generating docs for file aims/estimation/gmlfunc.h... Generating docs for file aims/estimation/lms-estimator.h... Generating docs for file aims/estimation/m-estimator.h... Generating docs for file aims/estimation/m-func.h... Generating docs for file aims/estimation/medfunc.h... Generating docs for file aims/pyramid/medfunc.h... Generating docs for file aims/estimation/msfunc.h... Generating docs for file aims/estimation/wlms-estimator.h... Generating docs for file aims/fastComputation/tabulation.h... Generating docs for file aims/ffd/tabulSpline.h... Generating docs for file aims/fibers/fiberDistance.h... Generating docs for file aims/foldgraph/foldgraphattributes.h... Generating docs for file aims/foldgraph/foldoversegmentation.h... Generating docs for file aims/geodesicpath/geodesic_algorithm_base.h... Generating docs for file aims/geodesicpath/geodesic_algorithm_dijkstra.h... Generating docs for file aims/geodesicpath/geodesic_algorithm_dijkstra_alternative.h... Generating docs for file aims/geodesicpath/geodesic_algorithm_exact.h... Generating docs for file ai/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/surface/glcomponent.h:152: warning: explicit link request to 'texnum' could not be resolved /casa/host/build/include/anatomist/surface/glcomponent.h:149: warning: explicit link request to 'texnum' could not be resolved /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' ms/geodesicpath/geodesic_algorithm_exact_elements.h... Generating docs for file aims/geodesicpath/geodesic_algorithm_graph_base.h... Generating docs for file aims/geodesicpath/geodesic_algorithm_subdivision.h... Generating docs for file aims/geodesicpath/geodesic_constants_and_simple_functions.h... Generating docs for file aims/geodesicpath/geodesic_memory.h... Generating docs for file aims/geodesicpath/geodesic_mesh.h... Generating docs for file aims/geodesicpath/geodesic_mesh_elements.h... Generating docs for file aims/geodesicpath/geodesicPath.h... Generating docs for file aims/histogram/cumulated.h... Generating docs for file aims/histogram/equalizedHisto.h... Generating docs for file aims/histogram/histogram.h... Generating docs for file aims/histogram/histogram_g.h... Generating docs for file aims/histogram/regularBinnedHisto.h... Generating docs for file aims/histogram/simpleHisto.h... Generating docs for file aims/information/information.h... Generating docs for file aims/information/pdf.h... Generating docs for file aims/interpolation/interpolatedvolume.h... Generating docs for file aims/interpolation/interpolatedvolume_d.h... Generating docs for file aims/io/roigtmR.h... Generating docs for file aims/io/roigtmW.h... Generating docs for file aims/io/roiselectorR.h... Generating docs for file aims/math/balanc.h... Generating docs for file aims/math/balbak.h... Generating docs for file aims/math/bessel.h... Generating docs for file aims/math/bspline.h... Generating docs for file aims/math/bspline2.h... Generating docs for file aims/math/bspline3.h... Generating docs for file aims/math/curv2Diso.h... Generating docs for file aims/math/curv3Diso.h... Generating docs for file aims/math/discriminantanalysis.h... Generating docs for file aims/math/discriminantanalysis_d.h... Generating docs for file aims/math/distspheric.h... Generating docs for file aims/math/eigen.h... Generating docs for file aims/math/elmhes.h... Generating docs for file aims/math/eltran.h... Generating docs for file aims/math/gaussj.h... Generating docs for file aims/math/geometry.h... Generating docs for file aims/math/gradient.h... Generating docs for file aims/math/harris.h... Generating docs for file aims/math/householder.h... Generating docs for file aims/math/hqr.h... Generating docs for file aims/math/hypergeometric.h... Generating docs for file aims/math/knn.h... Generating docs for file aims/math/math_g.h... Generating docs for file aims/math/multilinfit.h... Generating docs for file aims/math/pca.h... Generating docs for file aims/math/pca_d.h... Generating docs for file aims/math/ppca.h... Generating docs for file aims/math/ppca_d.h... Generating docs for file aims/math/random.h... Generating docs for file aims/math/sobel.h... Generating docs for file aims/math/svd.h... Generating docs for file aims/math/tensorMatrix.h... Generating docs for file aims/math/tqli.h... Generating docs for file aims/mesh/curv.h... Generating docs for file aims/mesh/facet.h... Generating docs for file aims/mesh/geometric.h... Generating docs for file aims/mesh/inflate.h... Generating docs for file aims/mesh/mesh_g.h... Generating docs for file aims/mesh/mesh_graph.h... Generating docs for file aims/mesh/mesh_graph_d.h... Generating docs for file aims/mesh/mesher.h... Generating docs for file aims/mesh/meshinterpoler.h... Generating docs for file aims/mesh/meshinterpoler_d.h... Generating docs for file aims/mesh/meshinterpoler_p.h... Generating docs for file aims/mesh/meshwatershed.h... Generating docs for file aims/moment/geomMoment.h... Generating docs for file aims/moment/momBase.h... Generating docs for file aims/moment/moment.h... Generating docs for file aims/moment/moment_g.h... Generating docs for file aims/moment/momFactory.h... Generating docs for file aims/moment/momIncStgy.h... Generating docs for file aims/moment/momInvariant.h... Generating docs for file aims/moment/momNormStgy.h... Generating docs for file aims/moment/momStgy.h... Generating docs for file aims/moment/momSurfStgy.h... Generating docs for file aims/moment/momTriFactory.h... Gener/casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:49,898::INFO::Pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.brainorientation.BrainOrientation.png'. ating docs for file aims/moment/momTriStgy.h... Generating docs for file aims/moment/momVolStgy.h... Generating docs for file aims/moment/triMoment.h... Generating docs for file aims/morphology/morphogreylevel_d.h... Generating docs for file aims/morphology/morphology_g.h... Generating docs for file aims/morphology/operatormorpho.h... Generating docs for file aims/mpi/types.h... Generating docs for file aims/signalfilter/types.h... Generating docs for file aims/optimization/covsrt.h... Generating docs for file aims/optimization/deterministic.h... Generating docs for file aims/optimization/levmrq.h... Generating docs for file aims/optimization/lm2gauss.h... Generating docs for file aims/optimization/lmfunc.h... Generating docs for file aims/optimization/lmgamma.h... Generating docs for file aims/optimization/lmgauss.h... Generating docs for file aims/optimization/objective.h... Generating docs for file aims/optimization/optimization_g.h... Generating docs for file aims/optimization/optimizer.h... Generating docs for file aims/optimization/powell.h... Generating docs for file aims/optimization/singleoptimizer.h... Generating docs for file aims/points_distribution/points_distribution.h... Generating docs for file aims/primalsketch/coupledDiffusion2DSmoother.h... Generating docs for file aims/primalsketch/coupledDiffusion2DSmoother_d.h... Generating docs for file aims/primalsketch/coupledSmoother.h... Generating docs for file aims/primalsketch/dericheSmoother.h... Generating docs for file aims/primalsketch/dericheSmoother_d.h... Generating docs for file aims/primalsketch/finiteElementSmoother.h... Generating docs for file aims/primalsketch/finiteElementSmoother_d.h... Generating docs for file aims/primalsketch/greyLevelBlob.h... Generating docs for file aims/primalsketch/imageCoupledSmoother.h... Generating docs for file aims/primalsketch/imageSmoother.h... Generating docs for file aims/primalsketch/peronaMalikSmoother.h... Generating docs for file aims/primalsketch/peronaMalikSmoother_d.h... Generating docs for file aims/primalsketch/primalSketch.h... Generating docs for file aims/primalsketch/primalSketch2graph.h... Generating docs for file aims/primalsketch/primalSketchUtil.h... Generating docs for file aims/primalsketch/scaleLevel.h... Generating docs for file aims/primalsketch/scalespace.h... Generating docs for file aims/primalsketch/scaleSpaceBlob.h... Generating docs for file aims/primalsketch/smoother.h... Generating docs for file aims/primalsketch/surfaceSmoother.h... Generating docs for file aims/pyramid/convolutionsubsampler.h... Generating docs for file aims/pyramid/convolutionsubsampler_d.h... Generating docs for file aims/pyramid/maxfunc.h... Generating docs for file aims/pyramid/meanfunc.h... Generating docs for file aims/pyramid/movingaveragesubsampler.h... Generating docs for file aims/pyramid/pyr-func.h... Generating docs for file aims/pyramid/pyramid.h... Generating docs for file aims/pyramid/pyramid_g.h... Generating docs for file aims/pyramid/splinepyramid.h... Generating docs for file aims/pyramid/splinepyramid_d.h... Generating docs for file aims/pyramid/splinesubsampler.h... Generating docs for file aims/pyramid/splinesubsampler_d.h... Generating docs for file aims/pyramid/subsamplingpyramid.h... Generating docs for file aims/pyramid/subsamplingpyramid_d.h... Generating docs for file aims/registration/block_matching.h... Generating docs for file aims/registration/block_matching_d.h... Generating docs for file aims/registration/displacement_field.h... Generating docs for file aims/registration/displacement_field_d.h... Generating docs for file aims/registration/ffd.h... Generating docs for file aims/registration/minimisation.h... Generating docs for file aims/registration/minimisation_d.h... Generating docs for file aims/registration/scale_control.h... Generating docs for file aims/registration/scale_control_d.h... Generating docs for file aims/registration/transformation.h... Generating docs for file aims/registration/transformation_d.h... Generating docs for file aims/resampling/bucketmapsampler.h..t/action/dynsegmentaction.h... Preprocessing /casa/host/build/include/anatomist/action/morphomath.h... Parsing file /casa/host/build/include/anatomist/action/morphomath.h... Preprocessing /casa/host/build/include/anatomist/control/dynsegmentcontrol.h... Parsing file /casa/host/build/include/anatomist/control/dynsegmentcontrol.h... Preprocessing /casa/host/build/include/anatomist/application/roialgomodule.h... Parsing file /casa/host/build/include/anatomist/application/roialgomodule.h... Preprocessing /casa/host/build/include/anatomist/winhisto/histoWin.h... Parsing file /casa/host/build/include/anatomist/winhisto/histoWin.h... Preprocessing /casa/host/build/include/anatomist/winhisto/histo.h... Parsing file /casa/host/build/include/anatomist/winhisto/histo.h... Preprocessing /casa/host/build/include/anatomist/module/histogram.h... Parsing file /casa/host/build/include/anatomist/module/histogram.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file anatomist/action/blobsegmentation.h... Generating code for file anatomist/action/dynsegmentaction.h... Generating code for file anatomist/action/histoplot.h... Generating code for file anatomist/action/labelnaming.h... Generating code for file anatomist/action/levelsetaction.h... Generating code for file anatomist/action/morphomath.h... Generating code for file anatomist/action/nodeselectionaction.h... Generating code for file anatomist/action/paintaction.h... Generating code for file anatomist/action/roichangeprocessor.h... Generating code for file anatomist/action/roimanagementaction.h... Generating code for file anatomist/action/surfpaintaction.h... Generating code for file anatomist/application/Anatomist.h... Generating code for file anatomist/application/anatomist_doc.h... Generating code for file anatomist/application/anatomistinfo.h... Generating code for file anatomist/application/fileDialog.h... Generating code for file anatomist/application/filedialogextension.h... Generating code for file anatomist/application/globalConfig.h... Generating code for file anatomist/application/hierarchyeditor.h... Generating code for file anatomist/application/listDir.h... Generating code for file anatomist/application/localConfig.h... Generating code for file anatomist/application/module.h... Generating code for file anatomi/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:49,950::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'. . Generating docs for file aims/resampling/cubicresampler.h... Generating docs for file aims/resampling/cubicresampler_d.h... Generating docs for file aims/resampling/extremadifferencesubsampling.h... Generating docs for file aims/resampling/generalsampler.h... Generating docs for file aims/resampling/harmonicCageResampler.h... Generating docs for file aims/resampling/linearresampler.h... Generating docs for file aims/resampling/linearresampler_d.h... Generating docs for file aims/resampling/majoritylabelresampler.h... Generating docs for file aims/resampling/majoritylabelresampler_d.h... Generating docs for file aims/resampling/majoritysubsampling.h... Generating docs for file aims/resampling/masklinresampler.h... Generating docs for file aims/resampling/masklinresampler_d.h... Generating docs for file aims/resampling/maxsubsampling.h... Generating docs for file aims/resampling/meansubsampling.h... Generating docs for file aims/resampling/medianresampler.h... Generating docs for file aims/resampling/medianresampler_d.h... Generating docs for file aims/resampling/mediansubsampling.h... Generating docs for file aims/resampling/meshToVoxelsResampler.h... Generating docs for file aims/resampling/meshToVoxelsResampler_d.h... Generating docs for file aims/resampling/minsubsampling.h... Generating docs for file aims/resampling/nearestneighborresampler.h... Generating docs for file aims/resampling/nearestneighborresampler_d.h... Generating docs for file aims/resampling/notnullmeansubsampling.h... Generating docs for file aims/resampling/notnullmediansubsampling.h... Generating docs for file aims/resampling/polynomial.h... Generating docs for file aims/resampling/quadraticresampler.h... Generating docs for file aims/resampling/quadraticresampler_d.h... Generating docs for file aims/resampling/quarticresampler.h... Generating docs for file aims/resampling/quarticresampler_d.h... Generating docs for file aims/resampling/quinticresampler.h... Generating docs for file aims/resampling/quinticresampler_d.h... Generating docs for file aims/resampling/resampler.h... Generating docs for file aims/resampling/resampler_d.h... Generating docs for file aims/resampling/resamplerfactory.h... Generating docs for file aims/resampling/resamplerfactory_d.h... Generating docs for file aims/resampling/resampling_g.h... Generating docs for file aims/resampling/samplable.h... Generating docs for file aims/resampling/samplable_cone.h... Generating docs for file aims/resampling/samplable_sphere.h... Generating docs for file aims/resampling/sampler.h... Generating docs for file aims/resampling/seventhorderresampler.h... Generating docs for file aims/resampling/seventhorderresampler_d.h... Generating docs for file aims/resampling/sixthorderresampler.h... Generating docs for file aims/resampling/sixthorderresampler_d.h... Generating docs for file aims/resampling/splineresampler.h... Generating docs for file aims/resampling/splineresampler_d.h... Generating docs for file aims/resampling/subsamplingimagealgorithm.h... Generating docs for file aims/resampling/sumsubsampling.h... Generating docs for file aims/roi/clusterArg.h... Generating docs for file aims/roi/clusterArg_d.h... Generating docs for file aims/roi/roigtm.h... Generating docs for file aims/roi/roiselector.h... Generating docs for file aims/roi/roistat.h... Generating docs for file aims/scalespace/bucketblob.h... Generating docs for file aims/scalespace/bucketblob_d.h... Generating docs for file aims/scalespace/meshBlob.h... Generating docs for file aims/scalespace/meshDiffuse.h... Generating docs for file aims/signalfilter/convol.h... Generating docs for file aims/signalfilter/convolutionfilter.h... Generating docs for file aims/signalfilter/convolutionfilter_d.h... Generating docs for file aims/signalfilter/differencefilter.h... Generating docs for file aims/signalfilter/diffusionSmoother.h... Generating docs for file aims/signalfilter/diffusionSmoother_d.h... Generating docs for file aims/signalfilter/elementfilterfactory.h... Generating docs for file aims/signalfilter/elementfilterfactory_d.h... Generating docs for file aims/signalfilter/filteringfunction.h... Generating docs for file aims/signalfilter/filteringfunction_element.h... Generating docs for file aims/signalfilter/filteringfunction_element_d.h... Generating docs for file aims/signalfilter/filteringfunction_element_rgb.h... Generating docs for file aims/signalfilter/filteringfunction_element_rgb_d.h... Generating docs for file aims/signalfilter/filteringfunction_linear.h... Generating docs for file aims/signalfilter/filteringfunction_linear_d.h... Generating docs for file aims/signalfilter/filteringfunction_linear_rgb.h... Generating docs for file aims/signalfilter/filteringfunction_linear_rgb_d.h... Generating docs for file aims/signalfilter/filteringimagealgorithm.h... Generating docs for file aims/signalfilter/firfilter.h... Generating docs for file aims/signalfilter/g2dsmooth.h... Generating docs for file aims/signalfilter/g3dsmooth.h... Generating docs for file aims/signalfilter/gaborfilter.h... Generating docs for file aims/signalfilter/gcoef.h... Generating docs for file aims/signalfilter/gcolumns.h... Generating docs for file aims/signalfilter/gframes.h... Generating docs for file aims/signalfilter/ggradient.h... Generating docs for file aims/signalfilter/ghessian.h... Generating docs for file aims/signalfilter/gjacobian.h... Generating docs for file aims/signalfilter/glines.h... Generating docs for file aims/signalfilter/grecurse.h... Generating docs for file aims/signalfilter/gslices.h... Generating docs for file aims/signalfilter/iirfilter.h... Generating docs for file aims/signalfilter/linearfilterfactory.h... Generating docs for file aims/signalfilter/linearfilterfactory_d.h... Generating docs for file aims/signalfilter/majorityfilter.h... Generating docs for file aims/signalfilter/maxfilter.h... Generating docs for file aims/signalfilter/meanfilter.h... Generating docs for file aims/signalfilter/medianfilter.h... Generating docs for file aims/signalfilter/minfilter.h... Generating docs for file aims/signalfilter/movingaveragefilter.h... Generating docs for file aims/signalfilter/parity.h... Generating docs for file aims/signalfilter/sdfilter.h... Generating docs for file aims/signalfilter/signalfilter_g.h... Generating docs for file aims/signalfilter/splinefilter.h... Generating docs for file aims/signalfilter/splinefilter_d.h... Generating docs for file aims/signalfilter/sumfilter.h... Generating docs for file aims/signalfilter/variancefilter.h... Generating docs for file aims/signalfilter/vfilter.h... Generating docs for file aims/spam/spam.h... Generating docs for file aims/talairach/cramer.h... Generating docs for file aims/talairach/talACPCNorm.h... Generating docs for file aims/talairach/talairach.h... Generating docs for file aims/talairach/talBoundingBoxPoints.h... Generating docs for file aims/talairach/talBox.h... Generating docs for file aims/talairach/talBoxBase.h... Generating docs for file aims/talairach/talPoints.h... Generating docs for file aims/talairach/talVolume.h... Generating docs for file aims/threshold/emthreshold.h... Generating docs for file aims/topology/adjacency.h... Generating docs for file aims/topology/cc18adjacent.h... Generating docs for file aims/topology/cc26adjacent.h... Generating docs for file aims/topology/cc6adjacent.h... Generating docs for file aims/topology/classifMeaning.h... Generating docs for file aims/topology/components.h... Generating docs for file aims/topology/components18.h... Generating docs for file aims/topology/components26.h... Generating docs for file aims/topology/connectivity18.h... Generating docs for file aims/topology/connectivity26.h... Generating docs for file aims/topology/connectivity6.h... Generating docs for file aims/topology/relation.h... Generating docs for file aims/topology/topoBase.h... Generating docs for file aims/topology/topoClassif.h... Generating docs for file aims/topology/topoClassifBase.h... Generating docs for file aims/topology/topoClassifier.h... Generating docs for file aims/topology/topology.h... Generating docs for file aims/transform/fft1d.h../casa/host/build/include/aims/utility/dynamic.h:41: warning: Found unknown command '\function' /casa/host/build/include/aims/utility/dynamic.h:95: warning: Found unknown command '\function' /casa/host/build/include/aims/utility/dynamic.h:95: warning: Found unknown command '\function' /casa/host/build/include/aims/utility/dynamic.h:41: warning: Found unknown command '\function' /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:50,002::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'. st/application/roialgomodule.h... Generating code for file anatomist/application/roibasemodule.h... Generating code for file anatomist/application/settings.h... Generating code for file anatomist/application/syntax.h... Generating code for file anatomist/browser/attDescr.h... Generating code for file anatomist/browser/attributedchooser.h... Generating code for file anatomist/browser/browsercontrol.h... Generating code for file anatomist/browser/labeledit.h... Generating code for file anatomist/browser/qObjBrowserWid.h... Generating code for file anatomist/browser/qwObjectBrowser.h... Generating code for file anatomist/browser/stringEdit.h... Generating code for file anatomist/bucket/Bucket.h... Generating code for file anatomist/color/colortraits.h... Generating code for file anatomist/color/Light.h... Generating code for file anatomist/color/Material.h... Generating code for file anatomist/color/minipalette.h... Generating code for file anatomist/color/objectPalette.h... Generating code for file anatomist/color/palette.h... Generating code for file anatomist/color/paletteList.h... Generating code for file anatomist/color/paletteselectwidget.h... Generating code for file anatomist/color/qwObjPalette.h... Generating code for file anatomist/color/wMaterial.h... Generating code for file anatomist/color/wObjPalette.h... Generating code for file anatomist/color/wRendering.h... Generating code for file anatomist/commands/cActivateAction.h... Generating code for file anatomist/commands/cAddNode.h... Generating code for file anatomist/commands/cAddObject.h... Generating code for file anatomist/commands/cApplyBuiltinReferential.h... Generating code for file anatomist/commands/cAskTexExtrema.h... Generating code for file anatomist/commands/cAssignReferential.h... Generating code for file anatomist/commands/cCamera.h... Generating code for file anatomist/commands/cChangePalette.h... Generating code for file anatomist/commands/cClosePipe.h... Generating code for file anatomist/commands/cCloseWindow.h... Generating code for file anatomist/commands/cControlsParams.h... Generating code for file anatomist/commands/cCreateControlWindow.h... Generating code for file anatomist/commands/cCreateGraph.h... Generating code for file anatomist/commands/cCreateWindow.h... Generating code for file anatomist/commands/cCreateWindowsBlock.h... Generating code for file anatomist/commands/cDeleteAll.h... Generating code for file anatomist/commands/cDeleteElement.h... Generating code for file anatomist/commands/cDeleteObject.h... Generating code for file anatomist/commands/cDuplicateObject.h... Generating code for file anatomist/commands/cEventFilter.h... Generating code for file anatomist/commands/cExit.h... Generating code for file anatomist/commands/cExportTexture.h... Generating code for file anatomist/commands/cExternalReference.h... Generating code for file anatomist/commands/cExtractTexture.h... Generating code for file anatomist/commands/cFusion2DParams.h... Generating code for file anatomist/commands/cFusion3DParams.h... Generating code for file anatomist/commands/cFusionInfo.h... Generating code for file anatomist/commands/cFusionObjects.h... Generating code for file anatomist/commands/cGenerateTexture.h... Generating code for file anatomist/commands/cGetConnThres.h... Generating code for file anatomist/commands/cGetInfo.h... Generating code for file anatomist/commands/cGraphDisplayProperties.h... Generating code for file anatomist/commands/cGraphParams.h... Generating code for file anatomist/commands/cGroupObjects.h... Generating code for file anatomist/commands/cLinkedCursor.h... Generating code for file anatomist/commands/cLinkWindows.h... Generating code for file anatomist/commands/cLoadGraphSubObjects.h... Generating code for file anatomist/commands/cLoadObject.h... Generating code for file anatomist/commands/cLoadObjects.h... Generating code for file anatomist/commands/cLoadTransformation.h... Generating code for file anatomist/commands/cLoadTransformationGraph.h... Generating code for file anatomist/commands/cNewId.h... Generating code . Generating docs for file aims/transform/hilbert1d.h... Generating docs for file aims/transform/least_square_estimation.h... Generating docs for file aims/transform/rigidestimation.h... Generating docs for file aims/transform/transform_objects.h... Generating docs for file aims/transform/transform_objects_d.h... Generating docs for file aims/utility/dynamic.h... Generating docs for file aims/utility/dynamic_d.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound Adjacency... Generating docs for compound AimsConvolution... Generating docs for compound AimsDistmapMask... Generating docs for compound AimsDistmapMaskPoint... Generating docs for compound AimsEigen... Generating docs for compound AimsEMThreshold... Generating docs for compound AimsFIRFilter... Generating docs for compound AimsGradient... Generating docs for compound AimsMaskedConvolution... Generating docs for compound AimsPCA... Generating docs for compound AimsSVD... Generating docs for compound AimsVFilter... Generating docs for compound BackBalancing... Generating docs for compound Balancing... Generating docs for compound BlockMatching... Generating docs for compound BucketSampler... Generating docs for compound CC18Adjacent... Generating docs for compound CC26Adjacent... Generating docs for compound CC6Adjacent... Generating docs for compound ChamferMask... Generating docs for compound Components... Generating docs for compound Components18Neighborhood... Generating docs for compound Components26Neighborhood... Generating docs for compound Connectivity18... Generating docs for compound Connectivity26... Generating docs for compound Connectivity6... Generating docs for compound CovarianceStorage... Generating docs for compound CramerSolver... Generating docs for compound CumulatedHistogram... Generating docs for compound DecompositionTQLI... Generating docs for compound DetermOptimizer... Generating docs for compound DisplacementField... Generating docs for compound Equalizer... Generating docs for compound ExponentialDeviates... Generating docs for compound Facet... Generating docs for compound Gaussian2DSmoothing... Generating docs for compound Gaussian3DSmoothing... Generating docs for compound GaussianColumns... Generating docs for compound GaussianFrames... Generating docs for compound GaussianGradient... Generating docs for compound GaussianHessian... Generating docs for compound GaussianJacobian... Generating docs for compound GaussianLines... Generating docs for compound GaussianSlices... Generating docs for compound GaussJordan... Generating docs for compound GCoef... Generating docs for compound GeometricMoment... Generating docs for compound GMLFunc... Generating docs for compound HessenbergAccumulation... Generating docs for compound HessenbergQR... Generating docs for compound HessenbergReduction... Generating docs for compound Histogram... Generating docs for compound HouseholderTridiag... Generating docs for compound HuffStat... Generating docs for compound HuffStatTmpStruct... Generating docs for compound LevenbergMarquardt... Generating docs for compound LM2Gaussian... Generating docs for compound LMFunction... Generating docs for compound LMGamma... Generating docs for compound LMGaussian... Generating docs for compound LMSEstimator... Generating docs for compound LZBuffer... Generating docs for compound LZHLCompressor... Generating docs for compound LZHLDecoderStat... Generating docs for nested compound LZHLDecoderStat::Group... Generating docs for compound LZHLDecompressor... Generating docs for compound LZHLEncoder... Generating docs for compound LZHLEncoderStat... Generating docs for nested compound LZHLEncoderStat::Symbol... Generating docs for compound MaxPyramidFunc... Generating docs for compound MeanPyramidFunc... Generating docs for compound MedFunc... Generating docs for compound MedianPyramidFunc... Generating docs for compound MedianSmoothing... Generating docs for compound Mesher... Generating docs for compound MEstimator... Generating docs fofor file anatomist/commands/cNewPalette.h... Generating code for file anatomist/commands/cObjectInfo.h... Generating code for file anatomist/commands/cOutput.h... Generating code for file anatomist/commands/cPaintParams.h... Generating code for file anatomist/commands/cPopupPalette.h... Generating code for file anatomist/commands/cReloadObject.h... Generating code for file anatomist/commands/cRemoveObject.h... Generating code for file anatomist/commands/cSaveObject.h... Generating code for file anatomist/commands/cSaveTransformation.h... Generating code for file anatomist/commands/cSaveTransformationGraph.h... Generating code for file anatomist/commands/cSelect.h... Generating code for file anatomist/commands/cSelectByHierarchy.h... Generating code for file anatomist/commands/cServer.h... Generating code for file anatomist/commands/cSetConnThres.h... Generating code for file anatomist/commands/cSetControl.h... Generating code for file anatomist/commands/cSetMaterial.h... Generating code for file anatomist/commands/cSetObjectPalette.h... Generating code for file anatomist/commands/cShowObject.h... Generating code for file anatomist/commands/cSliceParams.h... Generating code for file anatomist/commands/cTexturingParams.h... Generating code for file anatomist/commands/cWindowBlock.h... Generating code for file anatomist/commands/cWindowConfig.h... Generating code for file anatomist/config/anatomist_config.h... Generating code for file anatomist/constrainteditor/wConstraintEditor.h... Generating code for file anatomist/control/abstractMenuHandler.h... Generating code for file anatomist/control/backPixmap_P.h... Generating code for file anatomist/control/coloredpixmap.h... Generating code for file anatomist/control/controlConfig.h... Generating code for file anatomist/control/controlMenuHandler.h... Generating code for file anatomist/control/dynsegmentcontrol.h... Generating code for file anatomist/control/graphParams.h... Generating code for file anatomist/control/labelnamingcontrol.h... Generating code for file anatomist/control/levelsetcontrol.h... Generating code for file anatomist/control/listboxeditor.h... Generating code for file anatomist/control/nodeselectioncontrol.h... Generating code for file anatomist/control/objectDrag.h... Generating code for file anatomist/control/paintcontrol.h... Generating code for file anatomist/control/qAbout.h... Generating code for file anatomist/control/qImageLabel.h... Generating code for file anatomist/control/qObjTree.h... Generating code for file anatomist/control/qWinTree.h... Generating code for file anatomist/control/surfpaintcontrol.h... Generating code for file anatomist/control/toolTips-qt.h... Generating code for file anatomist/control/wControl.h... Generating code for file anatomist/control/wcontrolevents.h... Generating code for file anatomist/control/whatsNew.h... Generating code for file anatomist/control/winconfigio.h... Generating code for file anatomist/control/windowdrag.h... Generating code for file anatomist/control/wPreferences.h... Generating code for file anatomist/controler/action.h... Generating code for file anatomist/controler/actiondictionary.h... Generating code for file anatomist/controler/actionpool.h... Generating code for file anatomist/controler/control.h... Generating code for file anatomist/controler/control_d.h... Generating code for file anatomist/controler/controldictionary.h... Generating code for file anatomist/controler/controlgroupdictionary.h... Generating code for file anatomist/controler/controlmanager.h... Generating code for file anatomist/controler/controlswitch.h... Generating code for file anatomist/controler/icondictionary.h... Generating code for file anatomist/controler/view.h... Generating code for file anatomist/dialogs/colorDialog.h... Generating code for file anatomist/dialogs/colorWidget.h... Generating code for file anatomist/dialogs/qclickgraphicsview.h... Generating code for file anatomist/dialogs/qmagnetslider.h... Generating code for file anatomist/dialogs/qScopeLineEdit.h... Generating code for file anatomist/erpio/erpR./casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:50,096::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'. [ 92%] Generating AimsBuildIndex help file ... [ 92%] Generating AimsBvalue help file ... /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/utility/dynamic.h:41: warning: Found unknown command '\function' /casa/host/build/include/aims/utility/dynamic.h:95: warning: Found unknown command '\function' /casa/host/build/include/aims/utility/dynamic.h:95: warning: Found unknown command '\function' /casa/host/build/include/aims/utility/dynamic.h:41: warning: Found unknown command '\function' /casa/host/build/include/aims/mesh/meshwatershed.h:73: warning: The following parameters of aims::meshBlobsBifurcation(const AimsSurfaceTriangle &mesh, const std::vector< double > &field, std::vector< int > &idx, std::vector< double > &height, std::vector< int > &father, std::vector< int > &label, double th) are not documented: parameter 'mesh' parameter 'field' parameter 'th' /casa/host/build/include/aims/mesh/meshwatershed.h:48: warning: argument 'lidx' of command @param is not found in the argument list of aims::meshWatershed(const AimsSurfaceTriangle &mesh, const std::vector< double > &field, std::vector< int > &idx, std::vector< int > &depth, std::vector< int > &major, std::vector< int > &label, double threshold) /casa/host/build/include/aims/mesh/meshwatershed.h:48: warning: argument 'ldepth' of command @param is not found in the argument list of aims::meshWatershed(const AimsSurfaceTriangle &mesh, const std::vector< double > &field, std::vector< int > &idx, std::vector< int > &depth, std::vector< int > &major, std::vector< int > &label, double threshold) /casa/host/build/include/aims/mesh/meshwatershed.h:48: warning: argument 'lmajor' of command @param is not found in the argument list of aims::meshWatershed(const AimsSurfaceTriangle &mesh, const std::vector< double > &field, std::vector< int > &idx, std::vector< int > &depth, std::vector< int > &major, std::vector< int > &label, double threshold) /casa/host/build/include/aims/mesh/meshwatershed.h:56: warning: The following parameters of aims::meshWatershed(const AimsSurfaceTriangle &mesh, const std::vector< double > &field, std::vector< int > &idx, std::vector< int > &depth, std::vector< int > &major, std::vector< int > &label, double threshold) are not documented: parameter 'mesh' parameter 'field' parameter 'idx' parameter 'depth' parameter 'major' parameter 'threshold' /casa/host/build/include/aims/algorithm/imagealgorithm.h:78: warning: argument 'Point4dl' of command @param is not found in the argument list of aims::ImageAlgorithmInterface< T >::getOutputImageDimensions(const Point4dl &dims) const /casa/host/build/include/aims/algorithm/imagealgorithm.h:84: warning: The following parameter of aims::ImageAlgorithmInterface::getOutputImageDimensions(const Point4dl &dims) const is not documented: parameter 'dims' /casa/host/build/include/aims/algorithm/imagealgorithm.h:89: warning: argument 'Point4df' of command @param is not found in the argument list of aims::ImageAlgorithmInterface< T >::getOutputImageVoxelSize(const Point4df &voxelsize) const /casa/host/build/include/aims/algorithm/imagealgorithm.h:95: warning: The following parameter of aims::ImageAlgorithmInterface::getOutputImageVoxelSize(const Point4df &voxelsize) const is not documented: parameter 'voxelsize' /casa/host/build/include/aims/algorithm/imagealgorithm.h:219: warning: argument 'Point4dl' of command @param is not found in the argument list of aims::ImageAlgorithm< T >::getOutputImageDimensions(const Point4dl &dims) const inherited from member getOutputImageDimensions at line 78 in file /casa/host/build/include/aims/algorithm/imagealgorithm.h /casa/host/build/include/aims/algorithm/imagealgorithm.h:219: warning: The following parameter of aims::ImageAlgorithm::getOutputImageDimensions(const Point4dl &dims) const is not documented: parameter 'dims' /casa/host/build/include/aims/algorithm/imagealgorithm.h:223: warning: argument 'Point4df' of command @param is not found in the argument list of aims::ImageAlgorithm< T >::getOutputImageVoxelSize(const Point4df &voxelsize) const inherited from member getOutputImageVoxelSize at line 89 in file /casa/host/build/include/aims/algorithm/imagealgorithm.h /casa/host/build/include/aims/algorithm/imagealgorithm.h:223: warning: The following parameter of aims::ImageAlgorithm::getOutputImageVoxelSize(const Point4df &voxelsize) const is not documented: parameter 'voxelsize' /casa/host/build/include/aims/algorithm/imagealgorithm.h:319: warning: The following parameter of aims::ImageAlgorithmSwitch< T, false >::execute(ImageAlgorithmInterface< T > &algo, const carto::VolumeRef< T > &in, carto::VolumeRef< T > &out, int verbose=carto::verbose) is not documented: parameter 'verbose' /casa/host/build/include/aims/algorithm/imagealgorithm.h:350: warning: The following parameter of aims::ImageAlgorithmSwitch< T, true >::execute(ImageAlgorithmInterface< ChannelType > &algo, const carto::VolumeRef< T > &in, carto::VolumeRef< T > &out, int verbose) is not documented: parameter 'verbose' [ 92%] Generating AimsChamferDistanceMap help file ... r compound MEstimatorFunc... Generating docs for compound Minimisation... Generating docs for compound Moment... Generating docs for compound MomentBase... Generating docs for compound MomentFactory... Generating docs for compound MomentIncrementalStrategy... Generating docs for compound MomentInvariant... Generating docs for compound MomentNormalStrategy... Generating docs for compound MomentStrategy... Generating docs for compound MomentSurfacicStrategy... Generating docs for compound MomentTriangleFactory... Generating docs for compound MomentTriangleStrategy... Generating docs for compound MomentVolumicStrategy... Generating docs for compound MpiDataTypeCode... Generating docs for compound MSFunc... Generating docs for compound NormalDeviates... Generating docs for compound ObjectiveFunc... Generating docs for compound Optimizer... Generating docs for compound OptimizerProbe... Generating docs for compound PowellOptimizer... Generating docs for compound PVItem... Generating docs for compound PVVectorItem... Generating docs for compound Pyramid... Generating docs for compound PyramidFunc... Generating docs for compound RecursiveGaussian... Generating docs for compound Sampler... Generating docs for compound ScaleControl... Generating docs for compound SimpleHistogram... Generating docs for compound SingleOptimizer... Generating docs for compound SobelGradient... Generating docs for compound SobelGradient< T, 2 >... Generating docs for compound SoftDecisionSimilarComponent... Generating docs for compound TabulSpline... Generating docs for compound TalairachACPCNorm... Generating docs for compound TalairachBoundingBoxPoints... Generating docs for compound TalairachBox... Generating docs for compound TalairachBoxBase... Generating docs for compound TalairachPoints... Generating docs for compound TalairachReferential... Generating docs for compound TalairachVolume... Generating docs for compound TopologicalClassification... Generating docs for compound TopologicalClassificationBase... Generating docs for compound TopologicalClassificationMeaning... Generating docs for compound TopologicalClassifier... Generating docs for compound TopologicalClassifier< aims::BucketMap< T > >... Generating docs for compound TopologicalClassifier< carto::VolumeRef< T > >... Generating docs for compound TopologicalRelation... Generating docs for compound Topology... Generating docs for compound TopologyBase... Generating docs for compound Transformation... Generating docs for compound TriangulationMoment... Generating docs for compound UniformDeviates... Generating docs for compound WLMSEstimator... Generating namespace index... Generating docs for namespace aims Generating docs for compound aims::ImageAlgorithmInterface... Generating docs for compound aims::ImageAlgorithm... Generating docs for compound aims::ImageAlgorithmSwitch... Generating docs for compound aims::ImageAlgorithmSwitch< T, false >... Generating docs for compound aims::ImageAlgorithmSwitch< T, true >... Generating docs for compound aims::Individuals... Generating docs for compound aims::ClassifStrategy... Generating docs for compound aims::Distance... Generating docs for compound aims::DynamicStrategy... Generating docs for compound aims::IterativeClassification... Generating docs for compound aims::KmeansStrategy... Generating docs for compound aims::PpcaAnalyserElement... Generating docs for compound aims::MixtureOfPPCA... Generating docs for compound aims::PcaStrategy... Generating docs for compound aims::GradientAdvection... Generating docs for compound aims::FastMarching... Generating docs for compound aims::Point3dfCompare... Generating docs for compound aims::Point3dCompare... Generating docs for compound aims::PairCompare... Generating docs for compound aims::SetCompare... Generating docs for compound aims::RealToRealFunctionTabulation... Generating docs for compound aims::FoldGraphAttributes... Generating docs for compound aims::FoldArgOverSegment... Generating docs for compound aims::GeodesicPath... Generating docs for compound aims::RegularBinnedHistogram... Genh... Generating code for file anatomist/erpio/erpWraper.h... Generating code for file anatomist/fusion/defFusionMethods.h... Generating code for file anatomist/fusion/fusionChooser.h... Generating code for file anatomist/fusion/fusionFactory.h... Generating code for file anatomist/gradientwidget/gradient.h... Generating code for file anatomist/gradientwidget/gradwidget.h... Generating code for file anatomist/gradientwidget/spline.h... Generating code for file anatomist/graph/AGraphIterator.h... Generating code for file anatomist/graph/attribAObject.h... Generating code for file anatomist/graph/Graph.h... Generating code for file anatomist/graph/GraphObject.h... Generating code for file anatomist/graph/pythonAObject.h... Generating code for file anatomist/graph/qgraphproperties.h... Generating code for file anatomist/hierarchy/hierarchy.h... Generating code for file anatomist/interface/qwSurfMatch.h... Generating code for file anatomist/interpoler/interpoler.h... Generating code for file anatomist/interpoler/interpolMethod.h... Generating code for file anatomist/landmark/graphLandmark.h... Generating code for file anatomist/landmark/landmFactory.h... Generating code for file anatomist/landmark/landmPicker.h... Generating code for file anatomist/landmark/plane.h... Generating code for file anatomist/misc/error.h... Generating code for file anatomist/mobject/Fusion2D.h... Generating code for file anatomist/mobject/Fusion3D.h... Generating code for file anatomist/mobject/glmobject.h... Generating code for file anatomist/mobject/globjectlist.h... Generating code for file anatomist/mobject/globjectvector.h... Generating code for file anatomist/mobject/MObject.h... Generating code for file anatomist/mobject/ObjectList.h... Generating code for file anatomist/mobject/objectVector.h... Generating code for file anatomist/mobject/wFusion2D.h... Generating code for file anatomist/mobject/wFusion3D.h... Generating code for file anatomist/module/anasurfmatch.h... Generating code for file anatomist/module/histogram.h... Generating code for file anatomist/module/profile.h... Generating code for file anatomist/module/surfpaintmodule.h... Generating code for file anatomist/module/surfpainttools.h... Generating code for file anatomist/module/volrenderfusionmethod.h... Generating code for file anatomist/module/volrendermodule.h... Generating code for file anatomist/object/actions.h... Generating code for file anatomist/object/clippedobject.h... Generating code for file anatomist/object/loadevent.h... Generating code for file anatomist/object/mobjectio.h... Generating code for file anatomist/object/Object.h... Generating code for file anatomist/object/objectConverter.h... Generating code for file anatomist/object/objectmenu.h... Generating code for file anatomist/object/objectmenuCallbacks.h... Generating code for file anatomist/object/objectparamselect.h... Generating code for file anatomist/object/objectutils.h... Generating code for file anatomist/object/objectutils_d.h... Generating code for file anatomist/object/optionMatcher.h... Generating code for file anatomist/object/oReader.h... Generating code for file anatomist/object/qtextureparams.h... Generating code for file anatomist/object/selfsliceable.h... Generating code for file anatomist/object/sliceable.h... Generating code for file anatomist/object/texturepanel.h... Generating code for file anatomist/object/texturewin.h... Generating code for file anatomist/object/volrender.h... Generating code for file anatomist/object/volrenderpanel.h... Generating code for file anatomist/object/volrendershader.h... Generating code for file anatomist/observer/Observable.h... Generating code for file anatomist/observer/observcreat.h... Generating code for file anatomist/observer/Observer.h... Generating code for file anatomist/primitive/primitive.h... Generating code for file anatomist/processor/Command.h... Generating code for file anatomist/processor/context.h... Generating code for file anatomist/processor/errormessage.h... Generating code for file anatomist/processor/event.h... Generating code f/casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved or file anatomist/processor/event_doc.h... Generating code for file anatomist/processor/pipeReader.h... Generating code for file anatomist/processor/pipeReaderP.h... Generating code for file anatomist/processor/Processor.h... Generating code for file anatomist/processor/Reader.h... Generating code for file anatomist/processor/Registry.h... Generating code for file anatomist/processor/Serializer.h... Generating code for file anatomist/processor/server.h... Generating code for file anatomist/processor/unserializer.h... Generating code for file anatomist/processor/Writer.h... Generating code for file anatomist/qtvr3/creator.h... Generating code for file anatomist/qtvr3/cubeZbuffer.h... Generating code for file anatomist/qtvr3/mipShader.h... Generating code for file anatomist/qtvr3/mpvrShader.h... Generating code for file anatomist/qtvr3/rfmtShader.h... Generating code for file anatomist/qtvr3/shader.h... Generating code for file anatomist/qtvr3/shaderFactory.h... Generating code for file anatomist/qtvr3/slicing.h... Generating code for file anatomist/qtvr3/sumShader.h... Generating code for file anatomist/qtvr3/vector3d.h... Generating code for file anatomist/qtvr3/vrShader.h... Generating code for file anatomist/qtvr3/vrsingleton.h... Generating code for file anatomist/reference/Geometry.h... Generating code for file anatomist/reference/Referential.h... Generating code for file anatomist/reference/refobserver.h... Generating code for file anatomist/reference/refpixmap.h... Generating code for file anatomist/reference/Transformation.h... Generating code for file anatomist/reference/transformobserver.h... Generating code for file anatomist/reference/transfSet.h... Generating code for file anatomist/reference/wChooseReferential.h... Generating code for file anatomist/reference/wReferential.h... Generating code for file anatomist/reference/wReferential_3d.h... Generating code for file anatomist/selection/postSelector.h... Generating code for file anatomist/selection/qSelectFactory.h... Generating code for file anatomist/selection/qSelectWid.h... Generating code for file anatomist/selection/qSelMenu.h... Generating code for file anatomist/selection/qwSelAttrib.h... Generating code for file anatomist/selection/selectFactory.h... Generating code for file anatomist/selection/selector.h... Generating code for file anatomist/selection/wSelChooser.h... Generating code for file anatomist/sparsematrix/connectivitymatrix.h... Generating code for file anatomist/sparsematrix/sparsematrix.h... Generating code for file anatomist/stdmod/stdmod.h... Generating code for file anatomist/surface/cutmesh.h... Generating code for file anatomist/surface/fusion2Dmesh.h... Generating code for file anatomist/surface/fusiontexsurf.h... Generating code for file anatomist/surface/glcomponent.h... Generating code for file anatomist/surface/glcomponent_internals.h... Generating code for file anatomist/surface/globject.h... Generating code for file anatomist/surface/mtexture.h... Generating code for file anatomist/surface/planarfusion3d.h... Generating code for file anatomist/surface/Shader.h... Generating code for file anatomist/surface/shownormals.h... Generating code for file anatomist/surface/shownormalsgui.h... Generating code for file anatomist/surface/surface.h... Generating code for file anatomist/surface/surface_d.h... Generating code for file anatomist/surface/tesselatedmesh.h... Generating code for file anatomist/surface/texsurface.h... Generating code for file anatomist/surface/textobject.h... Generating code for file anatomist/surface/texture.h... Generating code for file anatomist/surface/transformedobject.h... Generating code for file anatomist/surface/triangulated.h... Generating code for file anatomist/surface/vectorfield.h... Generating code for file anatomist/surface/wvectorfield.h... Generating code for file anatomist/surfmatcher/surfMatcher.h... Generating code for file anatomist/surfmatcher/surfMatchMethod.h... Generating code for file anatomist/volume/slice.h... Generating code for file anatomist/volume/Volume.h... Generating code for erating docs for compound aims::InterpolatedVolume... Generating docs for compound aims::RoiSelectorReader... Generating docs for compound aims::RoiGtmReader... Generating docs for compound aims::RoiGtmWriter... Generating docs for compound aims::DiscriminantAnalysisElement... Generating docs for compound aims::DiscriminantAnalysis... Generating docs for compound aims::BaseHarrisDetector... Generating docs for compound aims::HarrisDetector... Generating docs for compound aims::HarrisDetector< T, 2 >... Generating docs for compound aims::ProbabilisticPcaElement... Generating docs for compound aims::ProbabilisticPca... Generating docs for compound aims::BSplineOrder... Generating docs for compound aims::BSplineOrder< 0 >... Generating docs for compound aims::BSpline... Generating docs for compound aims::FastBSpline... Generating docs for compound aims::TabulBSpline... Generating docs for compound aims::DiscreteBSpline... Generating docs for compound aims::GeometricProperties... Generating docs for compound aims::Curvature... Generating docs for compound aims::CurvatureFactory... Generating docs for compound aims::FiniteElementCurvature... Generating docs for compound aims::BoixCurvature... Generating docs for compound aims::BarycenterCurvature... Generating docs for compound aims::BoixGaussianCurvature... Generating docs for compound aims::GaussianCurvature... Generating docs for compound aims::VertexRemover... Generating docs for compound aims::MeshInterpoler... Generating docs for nested compound aims::MeshInterpoler::Private... Generating docs for compound aims::CoordinatesFieldMeshInterpoler... Generating docs for compound aims::MorphoGreyLevel... Generating docs for compound aims::PointsDistribution... Generating docs for nested compound aims::PointsDistribution::CoulombAndRestoringForce... Generating docs for nested compound aims::PointsDistribution::CoulombForce... Generating docs for nested compound aims::PointsDistribution::ForceFunction... Generating docs for nested compound aims::PointsDistribution::MoveConstraints... Generating docs for nested compound aims::PointsDistribution::SphereMove... Generating docs for compound aims::DericheSmoother... Generating docs for compound aims::PeronaMalikSmoother... Generating docs for compound aims::FiniteElementSmoother... Generating docs for compound aims::ltstr_p3d... Generating docs for compound aims::ltstr_p3d< Point3d >... Generating docs for compound aims::ltstr_p3d< std::pair< Point3df, uint > >... Generating docs for compound aims::MaximumPoint... Generating docs for compound aims::SaddlePoint... Generating docs for compound aims::GreyLevelBlob... Generating docs for compound aims::BlobMeasurements... Generating docs for compound aims::ExtractGreyLevelBlobs... Generating docs for compound aims::GreyLevelBlobTools... Generating docs for compound aims::BaseScaleSpace... Generating docs for compound aims::ScaleSpace... Generating docs for nested compound aims::ScaleSpace::BlobDescriptor... Generating docs for compound aims::ScaleSpace< carto::VolumeRef< T >, carto::VolumeRef< T > >... Generating docs for compound aims::ScaleSpace< AimsSurface< D, Void >, Texture< T > >... Generating docs for compound aims::ScaleLevel... Generating docs for compound aims::ScaleLevel< carto::VolumeRef< T >, carto::VolumeRef< T > >... Generating docs for compound aims::ScaleLevel< AimsSurface< D, Void >, Texture< T > >... Generating docs for compound aims::Smoother... Generating docs for compound aims::Smoother< carto::VolumeRef< T >, carto::VolumeRef< T > >... Generating docs for compound aims::Smoother< AimsSurface< D, Void >, Texture< T > >... Generating docs for compound aims::PrimalSketch... Generating docs for compound aims::ScaleSpaceBlob... Generating docs for compound aims::Bifurcation... Generating docs for compound aims::ltstr_blob... Generating docs for compound aims::Primalsketch2graph... Generating docs for compound aims::CoupledSmoother... Generating docs for compound aims::CoupledSmoother< carto::VolumeRef< T >, carto::VolumeRef< T > >... Generating docs for compound aims:file anatomist/volume/volumeview.h... Generating code for file anatomist/window/colorstyle.h... Generating code for file anatomist/window/controlledWindow.h... Generating code for file anatomist/window/glcaps.h... Generating code for file anatomist/window/glcontext.h... Generating code for file anatomist/window/glwidget.h... Generating code for file anatomist/window/glwidgetmanager.h... Generating code for file anatomist/window/qwinblock.h... Generating code for file anatomist/window/qwindow.h... Generating code for file anatomist/window/qWinFactory.h... Generating code for file anatomist/window/viewstate.h... Generating code for file anatomist/window/Window.h... Generating code for file anatomist/window/winFactory.h... Generating code for file anatomist/window3D/agraphicsview_p.h... Generating code for file anatomist/window3D/annotedgraph.h... Generating code for file anatomist/window3D/boxviewslice.h... Generating code for file anatomist/window3D/connmatrixcontrol.h... Generating code for file anatomist/window3D/control3D.h... Generating code for file anatomist/window3D/cursor.h... Generating code for file anatomist/window3D/glwidget3D.h... Generating code for file anatomist/window3D/labeleditaction.h... Generating code for file anatomist/window3D/orientationAnnotation.h... Generating code for file anatomist/window3D/trackball.h... Generating code for file anatomist/window3D/trackcut.h... Generating code for file anatomist/window3D/trackOblique.h... Generating code for file anatomist/window3D/trackObliqueSlice.h... Generating code for file anatomist/window3D/transformer.h... Generating code for file anatomist/window3D/wFixedPointOfView.h... Generating code for file anatomist/window3D/window3D.h... Generating code for file anatomist/window3D/window3D_private.h... Generating code for file anatomist/window3D/wLightModel.h... Generating code for file anatomist/window3D/wTools3D.h... Generating code for file anatomist/window3D/zoomDialog.h... Generating code for file anatomist/winhisto/histo.h... Generating code for file anatomist/winhisto/histoWin.h... Generating code for file anatomist/winprof/profFactory.h... Generating code for file anatomist/winprof/profStrategy.h... Generating code for file anatomist/winprof/profT.h... Generating code for file anatomist/winprof/profWin.h... Generating code for file anatomist/winprof/profX.h... Generating code for file anatomist/winprof/profY.h... Generating code for file anatomist/winprof/profZ.h... Generating file documentation... Generating docs for file anatomist/action/blobsegmentation.h... Generating docs for file anatomist/action/dynsegmentaction.h... Generating docs for file anatomist/action/histoplot.h... Generating docs for file anatomist/action/labelnaming.h... Generating docs for file anatomist/action/levelsetaction.h... Generating docs for file anatomist/action/morphomath.h... Generating docs for file anatomist/action/nodeselectionaction.h... Generating docs for file anatomist/action/paintaction.h... Generating docs for file anatomist/action/roichangeprocessor.h... Generating docs for file anatomist/action/roimanagementaction.h... Generating docs for file anatomist/action/surfpaintaction.h... Generating docs for file anatomist/application/Anatomist.h... Generating docs for file anatomist/application/anatomist_doc.h... Generating docs for file anatomist/application/anatomistinfo.h... Generating docs for file anatomist/application/fileDialog.h... Generating docs for file anatomist/application/filedialogextension.h... Generating docs for file anatomist/application/globalConfig.h... Generating docs for file anatomist/application/hierarchyeditor.h... Generating docs for file anatomist/application/listDir.h... Generating docs for file anatomist/application/localConfig.h... Generating docs for file anatomist/application/module.h... Generating docs for file anatomist/application/roialgomodule.h... Generating docs for file anatomist/application/roibasemodule.h... Generating docs for file anatomist/application/settings.h... Generating docs for file anatomist/application/syntax.h... /casa/host/build/include/aims/resampling/resampler.h:228: warning: argument 'transform' of command @param is not found in the argument list of aims::Resampler< T >::resample_inv(const carto::Volume< T > &input_data, const soma::Transformation3d &inverse_transform_to_mm, const T &background, carto::Volume< T > &output_data, bool verbose=false) const /casa/host/build/include/aims/resampling/resampler.h:247: warning: The following parameter of aims::Resampler::resample_inv(const carto::Volume< T > &input_data, const soma::Transformation3d &inverse_transform_to_mm, const T &background, carto::Volume< T > &output_data, bool verbose=false) const is not documented: parameter 'inverse_transform_to_mm' /casa/host/build/include/aims/resampling/resampler.h:205: warning: argument 'inverse_transform' of command @param is not found in the argument list of aims::Resampler< T >::resample_inv(const carto::Volume< T > &input_data, const soma::Transformation3d &inverse_transform_to_mm, const T &background, const Point3df &output_location, T &output_value, int timestep) const /casa/host/build/include/aims/resampling/resampler.h:221: warning: The following parameter of aims::Resampler::resample_inv(const carto::Volume< T > &input_data, const soma::Transformation3d &inverse_transform_to_mm, const T &background, const Point3df &output_location, T &output_value, int timestep) const is not documented: parameter 'inverse_transform_to_mm' Generating docs for file anatomist/browser/attDescr.h... Generating docs for file anatomist/browser/attributedchooser.h... Generating docs for file anatomist/browser/browsercontrol.h... Generating docs for file anatomist/browser/labeledit.h... Generating docs for file anatomist/browser/qObjBrowserWid.h... Generating docs for file anatomist/browser/qwObjectBrowser.h... Generating docs for file anatomist/browser/stringEdit.h... Generating docs for file anatomist/bucket/Bucket.h... Generating docs for file anatomist/color/colortraits.h... Generating docs for file anatomist/color/Light.h... Generating docs for file anatomist/color/Material.h... Generating docs for file anatomist/color/minipalette.h... Generating docs for file anatomist/color/objectPalette.h... Generating docs for file anatomist/color/palette.h... Generating docs for file anatomist/color/paletteList.h... Generating docs for file anatomist/color/paletteselectwidget.h... Generating docs for file anatomist/color/qwObjPalette.h... Generating docs for file anatomist/color/wMaterial.h... Generating docs for file anatomist/color/wObjPalette.h... Generating docs for file anatomist/color/wRendering.h... Generating docs for file anatomist/commands/cActivateAction.h... Generating docs for file anatomist/commands/cAddNode.h... Generating docs for file anatomist/commands/cAddObject.h... Generating docs for file anatomist/commands/cApplyBuiltinReferential.h... Generating docs for file anatomist/commands/cAskTexExtrema.h... Generating docs for file anatomist/commands/cAssignReferential.h... Generating docs for file anatomist/commands/cCamera.h... Generating docs for file anatomist/commands/cChangePalette.h... Generating docs for file anatomist/commands/cClosePipe.h... Generating docs for file anatomist/commands/cCloseWindow.h... Generating docs for file anatomist/commands/cControlsParams.h... Generating docs for file anatomist/commands/cCreateControlWindow.h... Generating docs for file anatomist/commands/cCreateGraph.h... Generating docs for file anatomist/commands/cCreateWindow.h... Generating docs for file anatomist/commands/cCreateWindowsBlock.h... Generating docs for file anatomist/commands/cDeleteAll.h... Generating docs for file anatomist/commands/cDeleteElement.h... Generating docs for file anatomist/commands/cDeleteObject.h... Generating docs for file anatomist/commands/cDuplicateObject.h... Generating docs for file anatomist/commands/cEventFilter.h... Generating docs for file anatomist/commands/cExit.h... Generating docs for file anatomist/commands/cExportTexture.h... Generating docs for file anatomist/commands/cExternalReference.h... Generating docs for file anatomist/commands/cExtractTexture.h... Generating docs for file anatomist/commands/cFusion2DParams.h... Generating docs for file anatomist/commands/cFusion3DParams.h... Generating docs for file anatomist/commands/cFusionInfo.h... Generating docs for file anatomist/commands/cFusionObjects.h... Generating docs for file anatomist/commands/cGenerateTexture.h... Generating docs for file anatomist/commands/cGetConnThres.h... Generating docs for file anatomist/commands/cGetInfo.h... Generating docs for file anatomist/commands/cGraphDisplayProperties.h... Generating docs for file anatomist/commands/cGraphParams.h... Generating docs for file anatomist/commands/cGroupObjects.h... Generating docs for file anatomist/commands/cLinkedCursor.h... Generating docs for file anatomist/commands/cLinkWindows.h... Generating docs for file anatomist/commands/cLoadGraphSubObjects.h... Generating docs for file anatomist/commands/cLoadObject.h... Generating docs for file anatomist/commands/cLoadObjects.h... Generating docs for file anatomist/commands/cLoadTransformation.h... Generating docs for file anatomist/commands/cLoadTransformationGraph.h... Generating docs for file anatomist/commands/cNewId.h... Generating docs for file anatomist/commands/cNewPalette.h... Generating docs for file anatomist/commands/cObjectInfo.h... Generating docs for file anatomist/commands/cOutput.h... Generating docs for file anatomist/commands/cPaintParams.h... Generating docs for file anatomist/commands/cPopupPalette.h... Generating docs for file anatomist/commands/cReloadObject.h... Generating docs for file anatomist/commands/cRemoveObject.h... Generating docs for file anatomist/commands/cSaveObject.h... Generating docs for file anatomist/commands/cSaveTransformation.h... Generating docs for file anatomist/commands/cSaveTransformationGraph.h... Generating docs for file anatomist/commands/cSelect.h... Generating docs for file anatomist/commands/cSelectByHierarchy.h... Generating docs for file anatomist/commands/cServer.h... Generating docs for file anatomist/commands/cSetConnThres.h... Generating docs for file anatomist/commands/cSetControl.h... Generating docs for file anatomist/commands/cSetMaterial.h... Generating docs for file anatomist/commands/cSetObjectPalette.h... Generating docs for file anatomist/commands/cShowObject.h... Generating docs for file anatomist/commands/cSliceParams.h... Generating docs for file anatomist/commands/cTexturingParams.h... Generating docs for file anatomist/commands/cWindowBlock.h... Generating docs for file anatomist/commands/cWindowConfig.h... Generating docs for file anatomist/config/anatomist_config.h... Generating docs for file anatomist/constrainteditor/wConstraintEditor.h... Generating docs for file anatomist/control/abstractMenuHandler.h... Generating docs for file anatomist/control/backPixmap_P.h... Generating docs for file anatomist/control/coloredpixmap.h... Generating docs for file anatomist/control/controlConfig.h... Generating docs for file anatomist/control/controlMenuHandler.h... Generating docs for file anatomist/control/dynsegmentcontrol.h... Generating docs for file anatomist/control/graphParams.h... Generating docs for file anatomist/control/labelnamingcontrol.h... Generating docs for file anatomist/control/levelsetcontrol.h... Generating docs for file anatomist/control/listboxeditor.h... Generating docs for file anatomist/control/nodeselectioncontrol.h... Generating docs for file anatomist/control/objectDrag.h... Generating docs for file anatomist/control/paintcontrol.h... Generating docs for file anatomist/control/qAbout.h... Generating docs for file anatomist/control/qImageLabel.h... Generating docs for file anatomist/control/qObjTree.h... Generating docs for file anatomist/control/qWinTree.h... Generating docs for file anatomist/control/surfpaintcontrol.h... Generating docs for file anatomist/control/toolTips-qt.h... Generating docs for file anatomist/control/wControl.h... Generating docs for file anatomist/control/wcontrolevents.h... Generating docs for file anatomist/control/whatsNew.h... Generating docs for file anatomist/control/winconfigio.h... Generating docs for file anatomist/control/windowdrag.h... Generating docs for file anatomist/control/wPreferences.h... Generating docs for file anatomist/controler/action.h... Generating docs for file anatomist/controler/actiondictionary.h... Generating docs for file anatomist/controler/actionpool.h... Generating docs for file anatomist/controler/control.h... Generating docs for file anatomist/controler/control_d.h... Generating docs for file anatomist/controler/controldictionary.h... Generating docs for file anatomist/controler/controlgroupdictionary.h... Generating docs for file anatomist/controler/controlmanager.h... Generating docs for file anatomist/controler/controlswitch.h... Generating docs for file anatomist/controler/icondictionary.h... Generating docs for file anatomist/controler/view.h... Generating docs for file anatomist/dialogs/colorDialog.h... Generating docs for file anatomist/dialogs/colorWidget.h... Generating docs for file anatomist/dialogs/qclickgraphicsview.h... Generating docs for file anatomist/dialogs/qmagnetslider.h... Generating docs for file anatomist/dialogs/qScopeLineEdit.h... Generating docs for file anatomist/erpio/erpR.h... Generating docs for file anatomist/erpio/erpWraper.h... Generating docs for file anatomist/fusion/defFusionMethods.h... Generating docs for file anatomist/fusion/fusionChooser.h... Generating docs for file anatomist/casa/host/build/include/aims/scalespace/meshDiffuse.h:69: warning: The following parameters of aims::TextureSmoothing::surfaceBlockSmooth(const std::string &latt_filename, const std::string *val_filename, const std::string &path_name, unsigned nscans, float dt, unsigned iter, unsigned scans_block, unsigned nodes_block, unsigned nnodes, unsigned ncolPINV, const std::string *outfiles, const float HMAX, const float Umax) are not documented: parameter 'HMAX' parameter 'Umax' warning: Included by graph for 'Command.h' not generated, too many nodes (65), threshold is 50. Consider increasing DOT_GRAPH_MAX_NODES. /fusion/fusionFactory.h... Generating docs for file anatomist/gradientwidget/gradient.h... Generating docs for file anatomist/gradientwidget/gradwidget.h... Generating docs for file anatomist/gradientwidget/spline.h... Generating docs for file anatomist/graph/AGraphIterator.h... Generating docs for file anatomist/graph/attribAObject.h... Generating docs for file anatomist/graph/Graph.h... Generating docs for file anatomist/graph/GraphObject.h... Generating docs for file anatomist/graph/pythonAObject.h... Generating docs for file anatomist/graph/qgraphproperties.h... Generating docs for file anatomist/hierarchy/hierarchy.h... Generating docs for file anatomist/interface/qwSurfMatch.h... Generating docs for file anatomist/interpoler/interpoler.h... Generating docs for file anatomist/interpoler/interpolMethod.h... Generating docs for file anatomist/landmark/graphLandmark.h... Generating docs for file anatomist/landmark/landmFactory.h... Generating docs for file anatomist/landmark/landmPicker.h... Generating docs for file anatomist/landmark/plane.h... Generating docs for file anatomist/misc/error.h... Generating docs for file anatomist/mobject/Fusion2D.h... Generating docs for file anatomist/mobject/Fusion3D.h... Generating docs for file anatomist/mobject/glmobject.h... Generating docs for file anatomist/mobject/globjectlist.h... Generating docs for file anatomist/mobject/globjectvector.h... Generating docs for file anatomist/mobject/MObject.h... Generating docs for file anatomist/mobject/ObjectList.h... Generating docs for file anatomist/mobject/objectVector.h... Generating docs for file anatomist/mobject/wFusion2D.h... Generating docs for file anatomist/mobject/wFusion3D.h... Generating docs for file anatomist/module/anasurfmatch.h... Generating docs for file anatomist/module/histogram.h... Generating docs for file anatomist/module/profile.h... Generating docs for file anatomist/module/surfpaintmodule.h... Generating docs for file anatomist/module/surfpainttools.h... Generating docs for file anatomist/module/volrenderfusionmethod.h... Generating docs for file anatomist/module/volrendermodule.h... Generating docs for file anatomist/object/actions.h... Generating docs for file anatomist/object/clippedobject.h... Generating docs for file anatomist/object/loadevent.h... Generating docs for file anatomist/object/mobjectio.h... Generating docs for file anatomist/object/Object.h... Generating docs for file anatomist/object/objectConverter.h... Generating docs for file anatomist/object/objectmenu.h... Generating docs for file anatomist/object/objectmenuCallbacks.h... Generating docs for file anatomist/object/objectparamselect.h... Generating docs for file anatomist/object/objectutils.h... Generating docs for file anatomist/object/objectutils_d.h... Generating docs for file anatomist/object/optionMatcher.h... Generating docs for file anatomist/object/oReader.h... Generating docs for file anatomist/object/qtextureparams.h... Generating docs for file anatomist/object/selfsliceable.h... Generating docs for file anatomist/object/sliceable.h... Generating docs for file anatomist/object/texturepanel.h... Generating docs for file anatomist/object/texturewin.h... Generating docs for file anatomist/object/volrender.h... Generating docs for file anatomist/object/volrenderpanel.h... Generating docs for file anatomist/object/volrendershader.h... Generating docs for file anatomist/observer/Observable.h... Generating docs for file anatomist/observer/observcreat.h... Generating docs for file anatomist/observer/Observer.h... Generating docs for file anatomist/primitive/primitive.h... Generating docs for file anatomist/processor/Command.h... Generating docs for file anatomist/processor/context.h... Generating docs for file anatomist/processor/errormessage.h... Generating docs for file anatomist/processor/event.h... Generating docs for file anatomist/processor/event_doc.h... Generating docs for file anatomist/processor/pipeReader.h... Generating docs for file anatomist/processor/pipeReaderP.h... Generating docs for file anatomist/processor/Processor/casa/host/build/include/aims/signalfilter/filteringfunction_element.h:74: warning: The following parameter of aims::ElementFilteringFunction::execute(const carto::VolumeRef< T > &in, const carto::rc_ptr< StructuringElement > &se) const=0 is not documented: parameter 'se' :CoupledDiffusion2DSmoother... Generating docs for compound aims::ConvolutionSubSampler... Generating docs for compound aims::DirectBSplineSubSampler... Generating docs for compound aims::MovingAverageSubSampler... Generating docs for compound aims::MovingAverageCascadeSubSampler... Generating docs for compound aims::SplinePyramid... Generating docs for compound aims::SplinePyramidBuilder... Generating docs for compound aims::DiscreteU... Generating docs for compound aims::DiscreteUB... Generating docs for compound aims::SubSamplingPyramidBuilder... Generating docs for compound aims::FfdTransformation... Generating docs for compound aims::SplineFfd... Generating docs for compound aims::TrilinearFfd... Generating docs for compound aims::Writer< aims::FfdTransformation >... Generating docs for compound aims::CubicResampler... Generating docs for compound aims::HarmonicCageMeshResampler... Generating docs for compound aims::LinearResampler... Generating docs for compound aims::MajorityLabelResampler... Generating docs for compound aims::MeshToVoxelsResampler... Generating docs for compound aims::NearestNeighborResampler... Generating docs for compound aims::QuadraticResampler... Generating docs for compound aims::QuarticResampler... Generating docs for compound aims::QuinticResampler... Generating docs for compound aims::Resampler... Generating docs for compound aims::ResamplerFactory... Generating docs for compound aims::ExtremaDifferenceSubSampling... Generating docs for compound aims::MajoritySubSampling... Generating docs for compound aims::MaxSubSampling... Generating docs for compound aims::MeanSubSampling... Generating docs for compound aims::MedianResampler... Generating docs for compound aims::MedianSubSampling... Generating docs for compound aims::MinSubSampling... Generating docs for compound aims::NotNullMeanSubSampling... Generating docs for compound aims::NotNullMedianSubSampling... Generating docs for compound aims::SumSubSampling... Generating docs for compound aims::ConeSamplable... Generating docs for compound aims::SphereSamplable... Generating docs for compound aims::SixthOrderResampler... Generating docs for compound aims::SeventhOrderResampler... Generating docs for compound aims::MultiChannelResamplerSwitch... Generating docs for compound aims::SplineResampler... Generating docs for compound aims::MultiChannelResamplerSwitch< false, T >... Generating docs for compound aims::MultiChannelResamplerSwitch< true, T >... Generating docs for compound aims::SubSamplingImageAlgorithm... Generating docs for compound aims::ClusterArgMaker... Generating docs for compound aims::RoiGtm... Generating docs for compound aims::RoiStats... Generating docs for compound aims::RoiSelector... Generating docs for compound aims::BucketBlobExtractor... Generating docs for nested compound aims::BucketBlobExtractor::BlobsMerger... Generating docs for nested compound aims::BucketBlobExtractor::BlobStruct... Generating docs for nested compound aims::BucketBlobExtractor::GLBlobsMerger... Generating docs for nested compound aims::BucketBlobExtractor::NoStopCriterion... Generating docs for nested compound aims::BucketBlobExtractor::OneComponentStopCriterion... Generating docs for nested compound aims::BucketBlobExtractor::StopCriterion... Generating docs for compound aims::TextureSmoothing... Generating docs for compound aims::ConvolutionFilter... Generating docs for compound aims::ExtremaDifferenceFilter... Generating docs for compound aims::BaseDiffusionSmoother... Generating docs for compound aims::DiffusionSmoother... Generating docs for compound aims::BaseMaskedDiffusionSmoother... Generating docs for compound aims::MaskedDiffusionSmoother... Generating docs for compound aims::MaskedDiffusionSmoother< T, std::vector< Point3df > >... Generating docs for compound aims::MaskedDiffusionSmoother< T, carto::VolumeRef< short > >... Generating docs for compound aims::FilteringFunctionInterface... Generating docs for compound aims::ElementFilteringFunction... Generating docs for compound aims::ElementFilteringFunctionFactory... Generatin.h... Generating docs for file anatomist/processor/Reader.h... Generating docs for file anatomist/processor/Registry.h... Generating docs for file anatomist/processor/Serializer.h... Generating docs for file anatomist/processor/server.h... Generating docs for file anatomist/processor/unserializer.h... Generating docs for file anatomist/processor/Writer.h... Generating docs for file anatomist/qtvr3/creator.h... Generating docs for file anatomist/qtvr3/cubeZbuffer.h... Generating docs for file anatomist/qtvr3/mipShader.h... Generating docs for file anatomist/qtvr3/mpvrShader.h... Generating docs for file anatomist/qtvr3/rfmtShader.h... Generating docs for file anatomist/qtvr3/shader.h... Generating docs for file anatomist/qtvr3/shaderFactory.h... Generating docs for file anatomist/qtvr3/slicing.h... Generating docs for file anatomist/qtvr3/sumShader.h... Generating docs for file anatomist/qtvr3/vector3d.h... Generating docs for file anatomist/qtvr3/vrShader.h... Generating docs for file anatomist/qtvr3/vrsingleton.h... Generating docs for file anatomist/reference/Geometry.h... Generating docs for file anatomist/reference/Referential.h... Generating docs for file anatomist/reference/refobserver.h... Generating docs for file anatomist/reference/refpixmap.h... Generating docs for file anatomist/reference/Transformation.h... Generating docs for file anatomist/reference/transformobserver.h... Generating docs for file anatomist/reference/transfSet.h... Generating docs for file anatomist/reference/wChooseReferential.h... Generating docs for file anatomist/reference/wReferential.h... Generating docs for file anatomist/reference/wReferential_3d.h... Generating docs for file anatomist/selection/postSelector.h... Generating docs for file anatomist/selection/qSelectFactory.h... Generating docs for file anatomist/selection/qSelectWid.h... Generating docs for file anatomist/selection/qSelMenu.h... Generating docs for file anatomist/selection/qwSelAttrib.h... Generating docs for file anatomist/selection/selectFactory.h... Generating docs for file anatomist/selection/selector.h... Generating docs for file anatomist/selection/wSelChooser.h... Generating docs for file anatomist/sparsematrix/connectivitymatrix.h... Generating docs for file anatomist/sparsematrix/sparsematrix.h... Generating docs for file anatomist/stdmod/stdmod.h... Generating docs for file anatomist/surface/cutmesh.h... Generating docs for file anatomist/surface/fusion2Dmesh.h... Generating docs for file anatomist/surface/fusiontexsurf.h... Generating docs for file anatomist/surface/glcomponent.h... Generating docs for file anatomist/surface/glcomponent_internals.h... Generating docs for file anatomist/surface/globject.h... Generating docs for file anatomist/surface/mtexture.h... Generating docs for file anatomist/surface/planarfusion3d.h... Generating docs for file anatomist/surface/Shader.h... Generating docs for file anatomist/surface/shownormals.h... Generating docs for file anatomist/surface/shownormalsgui.h... Generating docs for file anatomist/surface/surface.h... Generating docs for file anatomist/surface/surface_d.h... Generating docs for file anatomist/surface/tesselatedmesh.h... Generating docs for file anatomist/surface/texsurface.h... Generating docs for file anatomist/surface/textobject.h... Generating docs for file anatomist/surface/texture.h... Generating docs for file anatomist/surface/transformedobject.h... Generating docs for file anatomist/surface/triangulated.h... Generating docs for file anatomist/surface/vectorfield.h... Generating docs for file anatomist/surface/wvectorfield.h... Generating docs for file anatomist/surfmatcher/surfMatcher.h... Generating docs for file anatomist/surfmatcher/surfMatchMethod.h... Generating docs for file anatomist/volume/slice.h... Generating docs for file anatomist/volume/Volume.h... Generating docs for file anatomist/volume/volumeview.h... Generating docs for file anatomist/window/colorstyle.h... Generating docs for file anatomist/window/controlledWindow.h... Generating docs for file anatomist/window/glcaps.h... Genera/casa/host/build/include/anatomist/landmark/landmPicker.h:80: warning: The following parameter of ALandmarkPicker::nearestEuclidian(anatomist::GLComponent *obj, const Point3df &pt, unsigned &index, Point3df &vpos) is not documented: parameter 'vpos' /casa/host/build/include/anatomist/landmark/landmPicker.h:65: warning: The following parameter of ALandmarkPicker::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/reference/wChooseReferential.h:71: warning: The following parameter of ChooseReferentialWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' [ 92%] Built target aims-free-sphinx /casa/host/build/include/anatomist/erpio/erpWraper.h:71: warning: The following parameter of ErpWraper::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' [ 92%] Generating AimsClusterArg help file ... /casa/host/build/include/anatomist/window3D/wFixedPointOfView.h:57: warning: The following parameter of FixedPointOfViewWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/aims/distancemap/meshdistance.h:86: warning: The following parameter of aims::meshdistance::pairwiseDistanceMaps(const AimsSurface< 3, Void > &mesh, MapType &distmaps, const Texture< T > &inittex, float max_dist=FLT_MAX) is not documented: parameter 'mesh' /casa/host/build/include/aims/distancemap/meshdistance.h:99: warning: The following parameter of aims::meshdistance::pairwiseDistanceMaps(const AimsSurface< 3, Void > &mesh, MapType &distmaps, float max_dist=FLT_MAX) is not documented: parameter 'mesh' /casa/host/build/include/anatomist/mobject/wFusion2D.h:56: warning: The following parameter of Fusion2DWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/mobject/wFusion3D.h:57: warning: The following parameter of Fusion3DWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' g docs for compound aims::LinearFilteringFunction... Generating docs for compound aims::LinearFilteringFunctionFactory... Generating docs for compound aims::FilteringImageAlgorithmInterface... Generating docs for compound aims::LinearFilteringImageAlgorithm... Generating docs for compound aims::ElementFilteringImageAlgorithm... Generating docs for compound aims::GaborFilter... Generating docs for compound aims::MedianFilter... Generating docs for compound aims::NotNullMedianFilter... Generating docs for compound aims::MeanFilter... Generating docs for compound aims::NotNullMeanFilter... Generating docs for compound aims::MinFilter... Generating docs for compound aims::MaxFilter... Generating docs for compound aims::MajorityFilter... Generating docs for compound aims::NotNullMajorityFilter... Generating docs for compound aims::MovingAverageKernel... Generating docs for compound aims::MovingAverageCascadeKernel... Generating docs for compound aims::MovingAverageFilter... Generating docs for compound aims::MovingAverageCascadeFilter... Generating docs for compound aims::SumFilter... Generating docs for compound aims::VarFilter... Generating docs for compound aims::StDevFilter... Generating docs for compound aims::IIRFilterBase... Generating docs for compound aims::CausalSinglePoleIIRFilter... Generating docs for compound aims::SymAllPoleIIRFilter... Generating docs for compound aims::InverseBSplineFilter... Generating docs for compound aims::DirectBSplineFilter... Generating docs for compound aims::FilterType... Generating docs for compound aims::SpamBase... Generating docs for compound aims::SpamFromLikelihood... Generating docs for compound aims::Spam... Generating docs for compound aims::TransformLeastSquareEstimation... Generating docs for compound aims::AffineLeastSquareEstimation... Generating docs for compound aims::RigidLeastSquareEstimation... Generating docs for compound aims::TranslationLeastSquareEstimation... Generating docs for compound aims::SimiLeastSquareEstimation... Generating docs for compound aims::RigidTransformEstimation... Generating docs for compound aims::BundleTransformer... Generating docs for namespace aims::convolutionfilter Generating docs for namespace aims::convolutionsubsampler Generating docs for namespace aims::internal Generating docs for namespace aims::internal::fastmarching Generating docs for compound aims::internal::fastmarching::StorageTrait... Generating docs for compound aims::internal::fastmarching::StorageTrait< carto::Volume< T > >... Generating docs for compound aims::internal::fastmarching::StorageTrait< BucketMap< T > >... Generating docs for namespace aims::knn Generating docs for compound aims::knn::Distance... Generating docs for compound aims::knn::EuclidianDistance... Generating docs for compound aims::knn::SquaredEuclidianDistance... Generating docs for compound aims::knn::ManhattanDistance... Generating docs for compound aims::knn::TchebychevDistance... Generating docs for compound aims::knn::Database... Generating docs for nested compound aims::knn::Database::DatabaseCompare... Generating docs for nested compound aims::knn::Database::iterator... Generating docs for nested compound aims::knn::Database::Vector... Generating docs for compound aims::knn::MultiDatabase... Generating docs for compound aims::knn::Heap... Generating docs for nested compound aims::knn::Heap::MiniHeap... Generating docs for compound aims::knn::Knn... Generating docs for compound aims::knn::KnnBruteForce... Generating docs for compound aims::knn::KnnFriedman... Generating docs for compound aims::knn::KnnGlobalFriedman... Generating docs for namespace aims::meshdistance Generating docs for compound aims::meshdistance::DistMapMatrixTraits... Generating docs for compound aims::meshdistance::DistMapMatrixTraits< std::vector< T > >... Generating docs for compound aims::meshdistance::DistMapMatrixTraits< std::map< T, U > >... Generating docs for namespace aims::meshgraph Generating docs for compound aims::meshgraph::MeshFaceNode... Generating docs for compound aims::meshgraph::MeshVertexNode... Gene/casa/host/build/include/aims/mesh/mesh_graph.h:122: warning: The following parameters of aims::meshgraph::List2GraphMeshConvertor::operator()(TVertexCollection const &vertices, TFaceCollection const &faceIndices, std::vector< std::list< std::size_t > > const &invertedFaceIndices, TNeighborCollection const &neighbors, std::list< TVertexNode > &graph_vertices, std::list< TFaceNode > &graph_faces) are not documented: parameter 'graph_vertices' parameter 'graph_faces' /casa/host/build/include/anatomist/landmark/graphLandmark.h:74: warning: The following parameter of GraphLandmarkPicker::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/aims/resampling/subsamplingimagealgorithm.h:137: warning: argument 'Point4dl' of command @param is not found in the argument list of aims::singlechannel::SubSamplingImageAlgorithm< T >::getOutputImageDimensions(const Point4dl &dims) const inherited from member getOutputImageDimensions at line 78 in file /casa/host/build/include/aims/algorithm/imagealgorithm.h /casa/host/build/include/aims/resampling/subsamplingimagealgorithm.h:137: warning: The following parameter of aims::singlechannel::SubSamplingImageAlgorithm::getOutputImageDimensions(const Point4dl &dims) const is not documented: parameter 'dims' /casa/host/build/include/aims/resampling/subsamplingimagealgorithm.h:144: warning: argument 'Point4df' of command @param is not found in the argument list of aims::singlechannel::SubSamplingImageAlgorithm< T >::getOutputImageVoxelSize(const Point4df &voxelsize) const inherited from member getOutputImageVoxelSize at line 89 in file /casa/host/build/include/aims/algorithm/imagealgorithm.h /casa/host/build/include/aims/resampling/subsamplingimagealgorithm.h:144: warning: The following parameter of aims::singlechannel::SubSamplingImageAlgorithm::getOutputImageVoxelSize(const Point4df &voxelsize) const is not documented: parameter 'voxelsize' /casa/host/build/include/anatomist/window3D/wLightModel.h:57: warning: The following parameter of LightModelWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/color/wMaterial.h:64: warning: The following parameter of MaterialWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/aims/resampling/bucketmapsampler.h:67: warning: argument 'object' of command @param is not found in the argument list of aimsalgo::BucketMapSampler< T, D >::sample(Samplable< T, D > *data, unsigned dimensionIndex, AimsVector< short, D > &partialCoords, aims::BucketMap< Void > &result) /casa/host/build/include/aims/resampling/bucketmapsampler.h:73: warning: The following parameter of aimsalgo::BucketMapSampler::sample(Samplable< T, D > *data, unsigned dimensionIndex, AimsVector< short, D > &partialCoords, aims::BucketMap< Void > &result) is not documented: parameter 'data' /casa/host/build/include/anatomist/action/paintaction.h:78: warning: The following parameter of PaintActionView::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' ting docs for file anatomist/window/glcontext.h... Generating docs for file anatomist/window/glwidget.h... Generating docs for file anatomist/window/glwidgetmanager.h... Generating docs for file anatomist/window/qwinblock.h... Generating docs for file anatomist/window/qwindow.h... Generating docs for file anatomist/window/qWinFactory.h... Generating docs for file anatomist/window/viewstate.h... Generating docs for file anatomist/window/Window.h... Generating docs for file anatomist/window/winFactory.h... Generating docs for file anatomist/window3D/agraphicsview_p.h... Generating docs for file anatomist/window3D/annotedgraph.h... Generating docs for file anatomist/window3D/boxviewslice.h... Generating docs for file anatomist/window3D/connmatrixcontrol.h... Generating docs for file anatomist/window3D/control3D.h... Generating docs for file anatomist/window3D/cursor.h... Generating docs for file anatomist/window3D/glwidget3D.h... Generating docs for file anatomist/window3D/labeleditaction.h... Generating docs for file anatomist/window3D/orientationAnnotation.h... Generating docs for file anatomist/window3D/trackball.h... Generating docs for file anatomist/window3D/trackcut.h... Generating docs for file anatomist/window3D/trackOblique.h... Generating docs for file anatomist/window3D/trackObliqueSlice.h... Generating docs for file anatomist/window3D/transformer.h... Generating docs for file anatomist/window3D/wFixedPointOfView.h... Generating docs for file anatomist/window3D/window3D.h... Generating docs for file anatomist/window3D/window3D_private.h... Generating docs for file anatomist/window3D/wLightModel.h... Generating docs for file anatomist/window3D/wTools3D.h... Generating docs for file anatomist/window3D/zoomDialog.h... Generating docs for file anatomist/winhisto/histo.h... Generating docs for file anatomist/winhisto/histoWin.h... Generating docs for file anatomist/winprof/profFactory.h... Generating docs for file anatomist/winprof/profStrategy.h... Generating docs for file anatomist/winprof/profT.h... Generating docs for file anatomist/winprof/profWin.h... Generating docs for file anatomist/winprof/profX.h... Generating docs for file anatomist/winprof/profY.h... Generating docs for file anatomist/winprof/profZ.h... Generating page documentation... Generating docs for page objects_opengl... Generating group documentation... Generating class documentation... Generating docs for compound AimsFileDialog... Generating docs for compound AimsFileDialogExtension... Generating docs for compound ALandmarkPicker... Generating docs for compound APipeReader_Bridge... Generating docs for compound AttributedChooser... Generating docs for compound AWindow3D... Generating docs for nested compound AWindow3D::ObjectModifier... Generating docs for compound ChooseReferentialWindow... Generating docs for compound ControlledWindow... Generating docs for compound ControlSwitch... Generating docs for compound ControlWindow... Generating docs for compound ErpWraper... Generating docs for compound FixedPointOfViewWindow... Generating docs for compound Fusion2DWindow... Generating docs for compound Fusion3DWindow... Generating docs for compound FusionChooser... Generating docs for compound GLWidgetManager_Private_QObject... Generating docs for compound Gradient... Generating docs for compound GradientWidget... Generating docs for compound GraphLandmarkPicker... Generating docs for compound KeyRepetitiveEvent... Generating docs for compound LightModelWindow... Generating docs for compound listboxeditor... Generating docs for compound MaterialWindow... Generating docs for compound MenuCallback... Generating docs for compound ObjectChooseDialog... Generating docs for compound ObjectParamSelect... Generating docs for compound PaintActionView... Generating docs for compound PreferencesWindow... Generating docs for compound QAbout... Generating docs for compound QAColorDialog... Generating docs for compound QAColorWidget... Generating docs for compound QAGLWidget... Generating docs for compound QAGLWidget3D... Generating docs for compound QAHistogra/casa/host/build/include/anatomist/color/qwObjPalette.h:62: warning: The following parameter of QAPaletteWin::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/window/qwinblock.h:71: warning: The following parameter of QAWindowBlock::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/graph/qgraphproperties.h:59: warning: The following parameter of QGraphProperties::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' rating docs for compound aims::meshgraph::List2GraphMeshConvertor... Generating docs for compound aims::meshgraph::Graph2ListMeshConvertor... Generating docs for namespace aims::singlechannel Generating docs for compound aims::singlechannel::SubSamplingImageAlgorithm... Generating docs for compound aims::singlechannel::LinearFilteringImageAlgorithm... Generating docs for compound aims::singlechannel::ElementFilteringImageAlgorithm... Generating docs for namespace aims::strel Generating docs for namespace aims::util Generating docs for namespace aimsalgo Generating docs for compound aimsalgo::BucketMapSampler... Generating docs for compound aimsalgo::GeneralSampler... Generating docs for compound aimsalgo::Samplable... Generating docs for compound aimsalgo::Polynomial... Generating docs for namespace carto Generating docs for namespace geodesic Generating docs for compound geodesic::GeodesicAlgorithmBase... Generating docs for compound geodesic::SubdivisionNode... Generating docs for compound geodesic::GeodesicAlgorithmSubdivision... Generating docs for compound geodesic::DijkstraNode1... Generating docs for compound geodesic::GeodesicAlgorithmDijkstraAlternative... Generating docs for compound geodesic::DijkstraNode... Generating docs for compound geodesic::GeodesicAlgorithmDijkstra... Generating docs for compound geodesic::SimlpeMemoryAllocator... Generating docs for compound geodesic::MemoryAllocator... Generating docs for compound geodesic::OutputBuffer... Generating docs for compound geodesic::Interval... Generating docs for compound geodesic::IntervalWithStop... Generating docs for compound geodesic::IntervalList... Generating docs for compound geodesic::SurfacePointWithIndex... Generating docs for compound geodesic::SortedSources... Generating docs for compound geodesic::SimpleVector... Generating docs for compound geodesic::MeshElementBase... Generating docs for compound geodesic::Point3D... Generating docs for compound geodesic::Vertex... Generating docs for compound geodesic::Face... Generating docs for compound geodesic::Edge... Generating docs for compound geodesic::SurfacePoint... Generating docs for compound geodesic::HalfEdge... Generating docs for compound geodesic::GeodesicAlgorithmExact... Generating docs for compound geodesic::edge_visible_from_source... Generating docs for compound geodesic::Mesh... Generating docs for compound geodesic::GeodesicAlgorithmGraphBase... Generating docs for namespace soma Generating graph info page... Generating directory documentation... Generating dependency graph for directory aims Generating dependency graph for directory aims/classification Generating dependency graph for directory aims/compression Generating dependency graph for directory aims/connectivity Generating dependency graph for directory aims/distancemap Generating dependency graph for directory aims/estimation Generating dependency graph for directory aims/ffd Generating dependency graph for directory aims/foldgraph Generating dependency graph for directory aims/geodesicpath Generating dependency graph for directory aims/information Generating dependency graph for directory aims/interpolation Generating dependency graph for directory aims/io Generating dependency graph for directory aims/math Generating dependency graph for directory aims/mesh Generating dependency graph for directory aims/moment Generating dependency graph for directory aims/morphology Generating dependency graph for directory aims/optimization Generating dependency graph for directory aims/primalsketch Generating dependency graph for directory aims/pyramid Generating dependency graph for directory aims/registration Generating dependency graph for directory aims/resampling Generating dependency graph for directory aims/roi Generating dependency graph for directory aims/scalespace Generating dependency graph for directory aims/signalfilter Generating dependency graph for directory aims/threshold Generating dependency graph for directory aims/transform Generating index page... Generating page index... Generating module index... Generating n/casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/anatomist/selection/qSelectFactory.h:70: warning: The following parameters of QSelectFactory::handleSelectionMenu(anatomist::AWindow *win, int x, int y, const Tree *specific=0) are not documented: parameter 'win' parameter 'x' parameter 'y' /casa/host/build/include/anatomist/interface/qwSurfMatch.h:60: warning: The following parameter of QSurfMatchWin::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/anatomist/object/texturepanel.h:75: warning: The following parameter of QTexturePanel::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/object/texturewin.h:62: warning: The following parameter of QTextureWin::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:114: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/aims/primalsketch/greyLevelBlob.h:115: warning: explicit link request to 'type' could not be resolved /casa/host/build/include/anatomist/color/wRendering.h:67: warning: The following parameter of RenderingWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/action/dynsegmentaction.h:227: warning: The following parameter of RoiDynSegmentActionView::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/action/histoplot.h:55: warning: The following parameter of RoiHistoPlot::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/action/levelsetaction.h:187: warning: The following parameter of RoiLevelSetActionView::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/action/roimanagementaction.h:98: warning: The following parameter of RoiManagementActionView::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/action/morphomath.h:113: warning: The following parameter of RoiMorphoMathActionView::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/gradientwidget/spline.h:62: warning: argument 'ptSize' of command @param is not found in the argument list of Spline::findSegment(QSize gradSize, QPoint ptPos, int &p1, int &p2) const /casa/host/build/include/anatomist/window3D/wTools3D.h:54: warning: The following parameter of Tools3DWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/surface/wvectorfield.h:62: warning: The following parameter of VectorFieldEditionWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/object/volrenderpanel.h:68: warning: The following parameter of VolRenderPanel::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/color/minipalette.h:67: warning: The following parameter of anatomist::MiniPaletteGraphics::update(const Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/color/minipalette.h:248: warning: The following parameter of anatomist::MiniPaletteWidgetEdit::update(const Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/color/minipalette.h:283: warning: Unsupported xml/html tag <tab> found m... Generating docs for compound QAHistogramWindow... Generating docs for compound QANumSlider... Generating docs for compound QAOptionMenuCallback... Generating docs for compound QAPaletteWin... Generating docs for compound QAProfileFactory... Generating docs for compound QAProfileStrategy... Generating docs for compound QAProfileT... Generating docs for compound QAProfileWindow... Generating docs for compound QAProfileX... Generating docs for compound QAProfileY... Generating docs for compound QAProfileZ... Generating docs for compound QAViewToolTip... Generating docs for compound QAWindow... Generating docs for compound QAWindowBlock... Generating docs for compound QAWindowFactory... Generating docs for nested compound QAWindowFactory::Descrip... Generating docs for nested compound QAWindowFactory::PixList... Generating docs for compound QCancelLineEdit... Generating docs for compound QClickGraphicsView... Generating docs for compound QGraphParam... Generating docs for compound QGraphProperties... Generating docs for compound QImageLabel... Generating docs for compound QLabelEdit... Generating docs for compound QObjectBrowser... Generating docs for compound QObjectBrowserWidget... Generating docs for nested compound QObjectBrowserWidget::ItemDescr... Generating docs for compound QObjectTree... Generating docs for compound QScopeLineEdit... Generating docs for compound QSelAttrib... Generating docs for compound QSelectFactory... Generating docs for compound QSelectMenu... Generating docs for compound QStringEdit... Generating docs for compound QSurfMatchWin... Generating docs for compound QSurfMatchWin_AttEdit... Generating docs for compound QTexturePanel... Generating docs for compound QTextureParams... Generating docs for compound QTextureVectorEditor... Generating docs for compound QTextureWin... Generating docs for compound QVectorCompEditor... Generating docs for compound QWindowTree... Generating docs for compound ReferentialWindow... Generating docs for compound ReferentialWindow_TransCallback... Generating docs for compound RegionsFusionWindow... Generating docs for compound RenderingWindow... Generating docs for compound RoiDynSegmentActionView... Generating docs for compound RoiHistoPlot... Generating docs for compound RoiLevelSetActionView... Generating docs for compound RoiManagementActionView... Generating docs for compound RoiMorphoMathActionView... Generating docs for compound Spline... Generating docs for compound ToolBox... Generating docs for compound Tools3DWindow... Generating docs for compound VectorFieldEditionWindow... Generating docs for compound VolRenderPanel... Generating docs for compound ZoomDialog... Generating namespace index... Generating docs for namespace aims Generating docs for namespace anatomist Generating docs for compound anatomist::AnatomistInfo... Generating docs for compound anatomist::Anatomist... Generating docs for compound anatomist::GlobalConfiguration... Generating docs for compound anatomist::LocalConfiguration... Generating docs for compound anatomist::Settings... Generating docs for compound anatomist::Module... Generating docs for compound anatomist::ModuleManager... Generating docs for compound anatomist::ModuleObserver... Generating docs for compound anatomist::ModuleInterface... Generating docs for compound anatomist::SyntaxRepository... Generating docs for compound anatomist::SelectBrowserControl... Generating docs for compound anatomist::AttDescr... Generating docs for compound anatomist::Bucket... Generating docs for compound anatomist::ColorScalarPaletteTraits... Generating docs for compound anatomist::ColorNoPaletteTraits... Generating docs for compound anatomist::ColorTraits... Generating docs for compound anatomist::MiniPaletteGraphics... Generating docs for compound anatomist::MiniPaletteWidget... Generating docs for compound anatomist::MiniPaletteWidgetEdit... Generating docs for compound anatomist::MiniPaletteWidgetTranscient... Generating docs for compound anatomist::APaletteExtensionAction... Generating docs for compound anatomist::AObjectPalette... G/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/commands/cAssignReferential.h:56: warning: argument 'unser' of command @param is not found in the argument list of anatomist::AssignReferentialCommand::AssignReferentialCommand(Referential *ref, const std::set< AObject * > &obj, const std::set< AWindow * > &win, int refId=-1, CommandContext *context=0, const std::string &filename="", const std::string &uuid="") /casa/host/build/include/anatomist/commands/cAssignReferential.h:66: warning: The following parameters of anatomist::AssignReferentialCommand::AssignReferentialCommand(Referential *ref, const std::set< AObject * > &obj, const std::set< AWindow * > &win, int refId=-1, CommandContext *context=0, const std::string &filename="", const std::string &uuid="") are not documented: parameter 'context' parameter 'filename' parameter 'uuid' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' [ 92%] Generating AimsConvexHull help file ... /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' enerating docs for compound anatomist::APalette... Generating docs for compound anatomist::PaletteList... Generating docs for compound anatomist::PaletteSelectWidget... Generating docs for compound anatomist::Material... Generating docs for compound anatomist::Light... Generating docs for compound anatomist::APaletteWin... Generating docs for compound anatomist::APaletteWinFactory... Generating docs for compound anatomist::ActivateActionCommand... Generating docs for compound anatomist::AddObjectCommand... Generating docs for compound anatomist::ApplyBuiltinReferentialCommand... Generating docs for compound anatomist::AskTexExtremaCommand... Generating docs for compound anatomist::AssignReferentialCommand... Generating docs for compound anatomist::CameraCommand... Generating docs for compound anatomist::ChangePaletteCommand... Generating docs for compound anatomist::ControlsParamsCommand... Generating docs for compound anatomist::ClosePipeCommand... Generating docs for compound anatomist::CloseWindowCommand... Generating docs for compound anatomist::CreateControlWindowCommand... Generating docs for compound anatomist::CreateWindowCommand... Generating docs for compound anatomist::CreateWindowsBlockCommand... Generating docs for compound anatomist::DeleteAllCommand... Generating docs for compound anatomist::DeleteElementCommand... Generating docs for compound anatomist::DeleteObjectCommand... Generating docs for compound anatomist::DuplicateObjectCommand... Generating docs for compound anatomist::EventFilterCommand... Generating docs for compound anatomist::ExitCommand... Generating docs for compound anatomist::ExportTextureCommand... Generating docs for compound anatomist::ExternalReferenceCommand... Generating docs for compound anatomist::ExtractTextureCommand... Generating docs for compound anatomist::Fusion2DParamsCommand... Generating docs for compound anatomist::Fusion3DParamsCommand... Generating docs for compound anatomist::FusionInfoCommand... Generating docs for compound anatomist::FusionObjectsCommand... Generating docs for compound anatomist::GenerateTextureCommand... Generating docs for compound anatomist::GetInfoCommand... Generating docs for compound anatomist::GraphDisplayPropertiesCommand... Generating docs for compound anatomist::GraphParamsCommand... Generating docs for compound anatomist::GroupObjectsCommand... Generating docs for compound anatomist::LinkedCursorCommand... Generating docs for compound anatomist::LinkWindowsCommand... Generating docs for compound anatomist::LoadGraphSubObjectsCommand... Generating docs for compound anatomist::LoadObjectCommand... Generating docs for compound anatomist::LoadObjectsCommand... Generating docs for compound anatomist::LoadTransformationCommand... Generating docs for compound anatomist::LoadTransformationGraphCommand... Generating docs for compound anatomist::NewIdCommand... Generating docs for compound anatomist::NewPaletteCommand... Generating docs for compound anatomist::ObjectInfoCommand... Generating docs for compound anatomist::OutputCommand... Generating docs for compound anatomist::PopupPaletteCommand... Generating docs for compound anatomist::ReloadObjectCommand... Generating docs for compound anatomist::RemoveObjectCommand... Generating docs for compound anatomist::SaveObjectCommand... Generating docs for compound anatomist::SaveTransformationCommand... Generating docs for compound anatomist::SaveTransformationGraphCommand... Generating docs for compound anatomist::SelectCommand... Generating docs for compound anatomist::SelectByHierarchyCommand... Generating docs for compound anatomist::ServerCommand... Generating docs for compound anatomist::SetControlCommand... Generating docs for compound anatomist::SetMaterialCommand... Generating docs for compound anatomist::SetObjectPaletteCommand... Generating docs for compound anatomist::ShowObjectCommand... Generating docs for compound anatomist::SliceParamsCommand... Generating docs for compound anatomist::TexturingParamsCommand... Generating docs for compound anatomist::WindowBlockCommand... Generating d/casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/control/controlMenuHandler.h:57: warning: The following parameter of anatomist::AControlMenuHandler::AControlMenuHandler(QMenuBar *menubar, QObject *receiver) is not documented: parameter 'menubar' amespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... lookup cache used 14734/65536 hits=131938 misses=17807 finished... ocs for compound anatomist::WindowConfigCommand... Generating docs for compound anatomist::AbstractMenuHandler... Generating docs for compound anatomist::ColoredPixmapCache... Generating docs for compound anatomist::ControlConfiguration... Generating docs for compound anatomist::AControlMenuHandler... Generating docs for compound anatomist::GraphParams... Generating docs for compound anatomist::QAObjectDrag... Generating docs for compound anatomist::MapObjectEvent... Generating docs for compound anatomist::UnmapObjectEvent... Generating docs for compound anatomist::UpdateControlWindowEvent... Generating docs for compound anatomist::AWinConfigIO... Generating docs for compound anatomist::WhatsNew... Generating docs for compound anatomist::Action... Generating docs for compound anatomist::ActionDictionary... Generating docs for nested compound anatomist::ActionDictionary::ActionCreatorBase... Generating docs for nested compound anatomist::ActionDictionary::ActionCreatorFunc... Generating docs for compound anatomist::ControlDictionary... Generating docs for nested compound anatomist::ControlDictionary::ControlCreatorBase... Generating docs for nested compound anatomist::ControlDictionary::ControlCreatorFunc... Generating docs for compound anatomist::ControlGroupDictionary... Generating docs for compound anatomist::IconDictionary... Generating docs for compound anatomist::ActionPool... Generating docs for compound anatomist::ControlMapEntry... Generating docs for compound anatomist::LessControlMap... Generating docs for compound anatomist::ControlManager... Generating docs for compound anatomist::Control... Generating docs for nested compound anatomist::Control::DropActionLink... Generating docs for nested compound anatomist::Control::DropActionLinkOf... Generating docs for nested compound anatomist::Control::EnterLeaveActionLink... Generating docs for nested compound anatomist::Control::EnterLeaveActionLinkOf... Generating docs for nested compound anatomist::Control::FocusActionLink... Generating docs for nested compound anatomist::Control::FocusActionLinkOf... Generating docs for nested compound anatomist::Control::KeyActionLink... Generating docs for nested compound anatomist::Control::KeyActionLinkOf... Generating docs for nested compound anatomist::Control::KeyMapKey... Generating docs for nested compound anatomist::Control::LessKeyMap... Generating docs for nested compound anatomist::Control::LessMouseMap... Generating docs for nested compound anatomist::Control::MouseActionLink... Generating docs for nested compound anatomist::Control::MouseActionLinkOf... Generating docs for nested compound anatomist::Control::MouseButtonMapKey... Generating docs for nested compound anatomist::Control::MoveOrDragActionLink... Generating docs for nested compound anatomist::Control::MoveOrDragActionLinkOf... Generating docs for nested compound anatomist::Control::PaintActionLink... Generating docs for nested compound anatomist::Control::PaintActionLinkOf... Generating docs for nested compound anatomist::Control::PanActionLink... Generating docs for nested compound anatomist::Control::PanActionLinkOf... Generating docs for nested compound anatomist::Control::PinchActionLink... Generating docs for nested compound anatomist::Control::PinchActionLinkOf... Generating docs for nested compound anatomist::Control::ResizeActionLink... Generating docs for nested compound anatomist::Control::ResizeActionLinkOf... Generating docs for nested compound anatomist::Control::SelectionChangedActionLink... Generating docs for nested compound anatomist::Control::SelectionChangedActionLinkOf... Generating docs for nested compound anatomist::Control::ShowHideActionLink... Generating docs for nested compound anatomist::Control::ShowHideActionLinkOf... Generating docs for nested compound anatomist::Control::SwipeActionLink... Generating docs for nested compound anatomist::Control::SwipeActionLinkOf... Generating docs for nested compound anatomist::Control::TapActionLink... Generating docs for nested compound anatomist::Control::TapActionLinkOf... Generating do[ 92%] Generating AimsCorrectionEpi help file ... [ 92%] Generating AimsT2BasedCorrectionEpi help file ... [ 92%] Built target aimsalgo-doxygen /casa/host/build/include/anatomist/hierarchy/hierarchy.h:83: warning: The following parameter of anatomist::Hierarchy::findMatchingNomenclature(const AObject *obj, const AGraph **ag=0) is not documented: parameter 'obj' /casa/host/build/include/anatomist/selection/selectFactory.h:134: warning: The following parameters of anatomist::SelectFactory::handleSelectionMenu(AWindow *win, int x, int y, const Tree *specific=0) are not documented: parameter 'win' parameter 'x' parameter 'y' /casa/host/build/include/anatomist/observer/Observer.h:66: warning: The following parameter of anatomist::Observer::update(const Observable *observable, void *arg)=0 is not documented: parameter 'arg' [ 92%] Generating AimsCreateTexture help file ... /casa/host/build/include/anatomist/reference/refobserver.h:70: warning: The following parameter of anatomist::ReferentialObserver::update(const Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/surface/glcomponent.h:149: warning: explicit link request to 'texnum' could not be resolved /casa/host/build/include/anatomist/surface/glcomponent.h:152: warning: explicit link request to 'texnum' could not be resolved /casa/host/build/include/anatomist/surface/glcomponent.h:324: warning: The following parameters of anatomist::GLComponent::glBuildTexImage(const ViewState &state, unsigned tex, int dimx=-1, int dimy=-1, bool useTexScale=true) const are not documented: parameter 'state' parameter 'tex' parameter 'dimy' /casa/host/build/include/anatomist/surface/planarfusion3d.h:103: warning: The following parameters of anatomist::PlanarFusion3D::glBuildTexImage(const ViewState &state, unsigned tex, int dimx=-1, int dimy=-1, bool useTexScale=true) const are not documented: parameter 'state' parameter 'tex' parameter 'dimy' /casa/host/build/include/anatomist/surface/texture.h:91: warning: The following parameter of anatomist::ATexture::update(const Observable *observable, void *arg) is not documented: parameter 'arg' [ 92%] Built target anatomist-gpl-sphinx /casa/host/build/include/anatomist/surface/shownormalsgui.h:72: warning: The following parameter of anatomist::NormalsSettingsPanel::update(const Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/surface/shownormalsgui.h:62: warning: The following parameter of anatomist::NormalsSettingsPanel::NormalsObserver::update(const Observable *observable, void *arg) is not documented: parameter 'arg' [ 92%] Create "share/doc/5.2" [ 92%] Built target aims-free-devdoc cs for nested compound anatomist::Control::TapAndHoldActionLink... Generating docs for nested compound anatomist::Control::TapAndHoldActionLinkOf... Generating docs for nested compound anatomist::Control::WheelActionLink... Generating docs for nested compound anatomist::Control::WheelActionLinkOf... Generating docs for compound anatomist::KeyAndMouseLongEvent... Generating docs for compound anatomist::MouseLongEvent... Generating docs for compound anatomist::LongActions... Generating docs for compound anatomist::ControlSwitchObserver... Generating docs for compound anatomist::View... Generating docs for compound anatomist::QAWindowDrag... Generating docs for compound anatomist::QMagnetSlider... Generating docs for compound anatomist::Hierarchy... Generating docs for compound anatomist::QSelectWidget... Generating docs for compound anatomist::WSelectChooser... Generating docs for compound anatomist::SelectFactory... Generating docs for nested compound anatomist::SelectFactory::HColor... Generating docs for compound anatomist::Selector... Generating docs for compound anatomist::LowestLevelSelector... Generating docs for compound anatomist::PostSelector... Generating docs for compound anatomist::Observer... Generating docs for compound anatomist::Observable... Generating docs for compound anatomist::ObservableCreatedNotifier... Generating docs for compound anatomist::Transformation... Generating docs for compound anatomist::Referential... Generating docs for compound anatomist::Geometry... Generating docs for compound anatomist::Referentiable... Generating docs for compound anatomist::ReferentialObserver... Generating docs for compound anatomist::ReferencePixmap... Generating docs for compound anatomist::TransformationObserver... Generating docs for compound anatomist::ATransformSet... Generating docs for compound anatomist::RefWindow... Generating docs for compound anatomist::CutMesh... Generating docs for compound anatomist::Fusion2DMesh... Generating docs for compound anatomist::FusionTexSurfMethod... Generating docs for compound anatomist::GLComponent... Generating docs for nested compound anatomist::GLComponent::TexExtrema... Generating docs for nested compound anatomist::GLComponent::TexInfo... Generating docs for compound anatomist::AGLObject... Generating docs for compound anatomist::AMTexture... Generating docs for compound anatomist::PlanarFusion3D... Generating docs for compound anatomist::ASurface... Generating docs for compound anatomist::TesselatedMesh... Generating docs for compound anatomist::ATexSurfaceIterator... Generating docs for compound anatomist::const_ATexSurfaceIterator... Generating docs for compound anatomist::ATexSurface... Generating docs for compound anatomist::TextObject... Generating docs for compound anatomist::ATexture... Generating docs for compound anatomist::TransformedObject... Generating docs for compound anatomist::Shader... Generating docs for nested compound anatomist::Shader::ColoringModel_... Generating docs for nested compound anatomist::Shader::InterpolationModel_... Generating docs for nested compound anatomist::Shader::LightingModel_... Generating docs for nested compound anatomist::Shader::MaterialModel_... Generating docs for compound anatomist::ANormalsMesh... Generating docs for compound anatomist::NormalsFusionMethod... Generating docs for compound anatomist::NormalsSettingsPanel... Generating docs for nested compound anatomist::NormalsSettingsPanel::NormalsObserver... Generating docs for compound anatomist::VectorField... Generating docs for compound anatomist::AGraphIterator... Generating docs for compound anatomist::const_AGraphIterator... Generating docs for compound anatomist::PythonAObject... Generating docs for compound anatomist::AGraphObject... Generating docs for compound anatomist::AGraph... Generating docs for compound anatomist::ObjectActions... Generating docs for compound anatomist::ClippedObject... Generating docs for compound anatomist::AObjectLoadEvent... Generating docs for compound anatomist::ObjectReaderNotifier... Generating docs for compound anatom/casa/host/build/include/anatomist/object/oReader.h:86: warning: The following parameter of anatomist::ObjectReader::registerLoader(const std::string &extension, LoadFunctionClass *newFunc) is not documented: parameter 'extension' [ 92%] Built target highres-cortex-doxygen [ 92%] Generating AimsCurvature2d help file ... /casa/host/build/include/anatomist/object/Object.h:415: warning: Unsupported xml/html tag <T> found /casa/host/build/include/anatomist/object/Object.h:449: warning: The following parameter of anatomist::AObject::update(const Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/object/sliceable.h:80: warning: The following parameters of anatomist::Sliceable::glBuildTexImage(const ViewState &state, unsigned tex, int dimx=-1, int dimy=-1, bool useTexScale=true) const are not documented: parameter 'state' parameter 'tex' parameter 'dimy' [ 92%] Built target sigraph-doxygen [ 92%] Built target brainrat-private-doxygen [ 92%] Generating AimsCurvature3d help file ... /casa/host/build/include/anatomist/window/Window.h:224: warning: The following parameter of anatomist::AWindow::update(const Observable *observable, void *arg) is not documented: parameter 'arg' ist::MObjectIO... Generating docs for compound anatomist::ObjectMenuCallback... Generating docs for compound anatomist::ObjectMenuCallbackFunc... Generating docs for compound anatomist::ObjectMenu... Generating docs for compound anatomist::ObjectMenuRegistrerClass... Generating docs for compound anatomist::ObjectMenuRegistrerFuncClass... Generating docs for compound anatomist::ObjectUtils... Generating docs for compound anatomist::OptionMatcher... Generating docs for compound anatomist::ObjectReader... Generating docs for nested compound anatomist::ObjectReader::LoadFunctionClass... Generating docs for compound anatomist::AImage... Generating docs for compound anatomist::AObject... Generating docs for compound anatomist::ObjectConverter... Generating docs for compound anatomist::SelfSliceable... Generating docs for compound anatomist::Sliceable... Generating docs for compound anatomist::SliceableObject... Generating docs for compound anatomist::GLCaps... Generating docs for compound anatomist::GLWidgetManager... Generating docs for compound anatomist::BlockBorderWidget... Generating docs for compound anatomist::DraggableWrapper... Generating docs for compound anatomist::ViewState... Generating docs for compound anatomist::SliceViewState... Generating docs for compound anatomist::AWindowCreator... Generating docs for compound anatomist::AWindowFactory... Generating docs for compound anatomist::AWindowCreatorFunc... Generating docs for compound anatomist::AWindow... Generating docs for compound anatomist::AnnotationAction... Generating docs for compound anatomist::BoxViewSlice... Generating docs for compound anatomist::ConnectivityMatrixAction... Generating docs for compound anatomist::ConnectivityMatrixControl... Generating docs for compound anatomist::OrientationAnnotation... Generating docs for compound anatomist::Cursor... Generating docs for compound anatomist::Control3D... Generating docs for compound anatomist::Select3DControl... Generating docs for compound anatomist::FlightControl... Generating docs for compound anatomist::ObliqueControl... Generating docs for compound anatomist::TransformControl... Generating docs for compound anatomist::CutControl... Generating docs for compound anatomist::WindowActions... Generating docs for compound anatomist::LinkAction... Generating docs for compound anatomist::MenuAction... Generating docs for compound anatomist::SelectAction... Generating docs for compound anatomist::Zoom3DAction... Generating docs for compound anatomist::Translate3DAction... Generating docs for compound anatomist::Sync3DAction... Generating docs for compound anatomist::MovieAction... Generating docs for compound anatomist::SliceAction... Generating docs for compound anatomist::DragObjectAction... Generating docs for compound anatomist::SortMeshesPolygonsAction... Generating docs for compound anatomist::ObjectStatAction... Generating docs for compound anatomist::LabelEditAction... Generating docs for compound anatomist::Trackball... Generating docs for compound anatomist::ContinuousTrackball... Generating docs for compound anatomist::KeyFlightAction... Generating docs for compound anatomist::TrackCutAction... Generating docs for compound anatomist::CutSliceAction... Generating docs for compound anatomist::TrackOblique... Generating docs for compound anatomist::TrackObliqueSlice... Generating docs for compound anatomist::Transformer... Generating docs for compound anatomist::TranslaterAction... Generating docs for compound anatomist::PlanarTransformer... Generating docs for compound anatomist::ResizerAction... Generating docs for compound anatomist::GLObjectList... Generating docs for compound anatomist::GLObjectVector... Generating docs for compound anatomist::GLMObject... Generating docs for compound anatomist::ObjectVectorIterator... Generating docs for compound anatomist::const_ObjectVectorIterator... Generating docs for compound anatomist::ObjectVector... Generating docs for compound anatomist::BaseIterator... Generating docs for compound anatomist::AIterator... Generating docs for compound anatomist::/casa/host/build/include/anatomist/object/Object.h:415: warning: Unsupported xml/html tag <T> found /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' warning: Inheritance graph for 'anatomist::RegularCommand' not generated, too many nodes (57), threshold is 50. Consider increasing DOT_GRAPH_MAX_NODES. /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:151: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:155: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:153: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Registry.h:80: warning: Found unknown command '\Ref' /casa/host/build/include/anatomist/processor/Registry.h:60: warning: Found unknown command '\URL' /casa/host/build/include/anatomist/processor/Registry.h:80: warning: Found unknown command '\Ref' /casa/host/build/include/anatomist/processor/Registry.h:85: warning: The following parameters of anatomist::Registry::add(const std::string &command, Command::Reader function, const carto::SyntaxSet &syntax) are not documented: parameter 'function' parameter 'syntax' /casa/host/build/include/anatomist/processor/Reader.h:64: warning: The following parameter of anatomist::CommandReader::CommandReader(const std::string &filename, carto::MutexRcPtr< CommandContext > &context) is not documented: parameter 'context' [ 92%] Generating AimsCylinder help file ... /casa/host/build/include/anatomist/constrainteditor/wConstraintEditor.h:61: warning: The following parameter of anatomist::ConstraintEditorWindow::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' [ 92%] Generating AimsDanielssonDist help file ... MObject... Generating docs for compound anatomist::Fusion2D... Generating docs for compound anatomist::Fusion3D... Generating docs for compound anatomist::ObjectListIterator... Generating docs for compound anatomist::const_ObjectListIterator... Generating docs for compound anatomist::ObjectList... Generating docs for compound anatomist::Slice... Generating docs for compound anatomist::AVolumeBase... Generating docs for compound anatomist::AVolume... Generating docs for compound anatomist::AVolumeView... Generating docs for compound anatomist::CommandContext... Generating docs for compound anatomist::ErrorMessage... Generating docs for compound anatomist::OutputEvent... Generating docs for compound anatomist::OutputEventFilter... Generating docs for compound anatomist::EventHandler... Generating docs for compound anatomist::APipeReader... Generating docs for compound anatomist::Unserializer... Generating docs for compound anatomist::CommandServer... Generating docs for compound anatomist::Command... Generating docs for compound anatomist::RegularCommand... Generating docs for compound anatomist::SerializingCommand... Generating docs for compound anatomist::WaitCommand... Generating docs for compound anatomist::Processor... Generating docs for nested compound anatomist::Processor::Memo... Generating docs for compound anatomist::Registry... Generating docs for compound anatomist::CommandReader... Generating docs for compound anatomist::CommandWriter... Generating docs for compound anatomist::Serializer... Generating docs for compound anatomist::Fusion2dMethod... Generating docs for compound anatomist::Fusion3dMethod... Generating docs for compound anatomist::PlanarFusion3dMethod... Generating docs for compound anatomist::FusionTextureMethod... Generating docs for compound anatomist::FusionMultiTextureMethod... Generating docs for compound anatomist::FusionCutMeshMethod... Generating docs for compound anatomist::Fusion2DMeshMethod... Generating docs for compound anatomist::FusionSliceMethod... Generating docs for compound anatomist::FusionRGBAVolumeMethod... Generating docs for compound anatomist::FusionClipMethod... Generating docs for compound anatomist::FusionTesselationMethod... Generating docs for compound anatomist::ConnectivityMatrixFusionMethod... Generating docs for compound anatomist::VectorFieldFusionMethod... Generating docs for compound anatomist::FusionMethod... Generating docs for compound anatomist::FusionFactory... Generating docs for compound anatomist::StdModule... Generating docs for compound anatomist::AConnectivityMatrix... Generating docs for compound anatomist::ASparseMatrix... Generating docs for compound anatomist::GLItem... Generating docs for compound anatomist::Primitive... Generating docs for compound anatomist::GLList... Generating docs for compound anatomist::GLTexture... Generating docs for compound anatomist::GLItemList... Generating docs for compound anatomist::GLNoExecItemList... Generating docs for compound anatomist::ConstraintEditorWindow... Generating docs for compound anatomist::NodeSelectionAction... Generating docs for compound anatomist::NodeSelectionControl... Generating docs for compound anatomist::HierarchyEditor... Generating docs for compound anatomist::ErpReader... Generating docs for compound anatomist::AInterpolerMethod... Generating docs for compound anatomist::AInterpoler... Generating docs for compound anatomist::ALandmarkFactory... Generating docs for compound anatomist::PlaneFusionMethod... Generating docs for compound anatomist::CylinderFusionMethod... Generating docs for compound anatomist::ASurfMatchMethod... Generating docs for compound anatomist::ASurfMatcher... Generating docs for compound anatomist::AnaSurfMatch... Generating docs for compound anatomist::SurfpaintModule... Generating docs for compound anatomist::SurfpaintTools... Generating docs for compound anatomist::SurfpaintToolsAction... Generating docs for compound anatomist::SurfpaintToolsControl... Generating docs for compound anatomist::VolRenderFusionMethod... Generating docs for compound anatomist::Vo[ 92%] Generating AimsCompareSPMtToPrimalSketch help file ... [ 92%] Generating AimsElevationMap help file ... /casa/host/build/include/anatomist/action/levelsetaction.h:64: warning: The following parameter of anatomist::RoiLevelSetActionSharedData::update(const Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/action/paintaction.h:124: warning: The following parameters of anatomist::PaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm)=0 are not documented: parameter 'win' parameter 'transf' parameter 'point' parameter 'originalLabel' parameter 'finalLabel' parameter 'brushSize' parameter 'lineMode' parameter 'volumeOfLabels' parameter 'deltaModifications' parameter 'changes' parameter 'voxelSize' parameter 'line' parameter 'replace' parameter 'mm' /casa/host/build/include/anatomist/action/paintaction.h:177: warning: The following parameters of anatomist::PointPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented: parameter 'win' parameter 'transf' parameter 'point' parameter 'originalLabel' parameter 'finalLabel' parameter 'brushSize' parameter 'lineMode' parameter 'volumeOfLabels' parameter 'deltaModifications' parameter 'changes' parameter 'voxelSize' parameter 'line' parameter 'replace' parameter 'mm' /casa/host/build/include/anatomist/action/paintaction.h:200: warning: The following parameters of anatomist::SquarePaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented: parameter 'win' parameter 'transf' parameter 'point' parameter 'originalLabel' parameter 'finalLabel' parameter 'brushSize' parameter 'lineMode' parameter 'volumeOfLabels' parameter 'deltaModifications' parameter 'changes' parameter 'voxelSize' parameter 'line' parameter 'replace' parameter 'mm' /casa/host/build/include/anatomist/action/paintaction.h:224: warning: The following parameters of anatomist::DiskPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented: parameter 'win' parameter 'transf' parameter 'point' parameter 'originalLabel' parameter 'finalLabel' parameter 'brushSize' parameter 'lineMode' parameter 'volumeOfLabels' parameter 'deltaModifications' parameter 'changes' parameter 'voxelSize' parameter 'line' parameter 'replace' parameter 'mm' /casa/host/build/include/anatomist/action/paintaction.h:259: warning: The following parameters of anatomist::BallPaintStrategy::paint(AWindow3D *win, Transformation *transf, const Point3df &point, const AObject *originalLabel, AObject *finalLabel, float brushSize, bool lineMode, carto::VolumeRef< AObject * > &volumeOfLabels, const Point3df &vlOffset, aims::BucketMap< Void >::Bucket &deltaModifications, std::list< std::pair< Point3d, ChangesItem > > &changes, const Point3df &voxelSize, bool line, bool replace, bool mm) are not documented: parameter 'win' parameter 'transf' parameter 'point' parameter 'originalLabel' parameter 'finalLabel' parameter 'brushSize' parameter 'lineMode' parameter 'volumeOfLabels' parameter 'deltaModifications' parameter 'changes' parameter 'voxelSize' parameter 'line' parameter 'replace' parameter 'mm' /casa/host/build/include/anatomist/action/paintaction.h:296: warning: The following parameter of anatomist::PaintActionSharedData::update(const Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/action/roimanagementaction.h:203: warning: The following parameter of anatomist::RoiManagementActionSharedData::update(const Observable *observable, void *arg) is not documented: parameter 'arg' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'ref' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0) /casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'obj' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0) /casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'refId' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0) /casa/host/build/include/anatomist/commands/cGetConnThres.h:58: warning: argument 'unser' of command @param is not found in the argument list of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0) /casa/host/build/include/anatomist/commands/cGetConnThres.h:68: warning: The following parameters of anatomist::GetConnThresholdCommand::GetConnThresholdCommand(AObject *image, AWindow *win, const std::string &requestid, CommandContext *context=0) are not documented: parameter 'image' parameter 'requestid' parameter 'context' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'ref' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0) /casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'obj' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0) /casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'refId' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0) /casa/host/build/include/anatomist/commands/cSetConnThres.h:56: warning: argument 'unser' of command @param is not found in the argument list of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0) /casa/host/build/include/anatomist/commands/cSetConnThres.h:66: warning: The following parameters of anatomist::SetConnThresholdCommand::SetConnThresholdCommand(AObject *image, AWindow *win, bool assignLowThreshold, float lowThres, bool assignHighThreshold, float highThres, CommandContext *context=0) are not documented: parameter 'image' parameter 'assignLowThreshold' parameter 'lowThres' parameter 'assignHighThreshold' parameter 'highThres' parameter 'context' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:65: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:67: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/processor/Command.h:69: warning: Found unknown command '\tt' /casa/host/build/include/anatomist/action/dynsegmentaction.h:65: warning: The following parameter of anatomist::RoiDynSegmentAction::update(const anatomist::Observable *observable, void *arg) is not documented: parameter 'arg' lRenderShaderFusionMethod... Generating docs for compound anatomist::VolRenderModule... Generating docs for compound anatomist::VolRender... Generating docs for compound anatomist::VolRenderShader... Generating docs for compound anatomist::ProfileModule... Generating docs for compound anatomist::RoiLevelSetActionSharedData... Generating docs for compound anatomist::RoiLevelSetAction... Generating docs for compound anatomist::RoiLabelNamingAction... Generating docs for compound anatomist::ChangesItem... Generating docs for compound anatomist::ChangedBucketsItem... Generating docs for compound anatomist::RoiChangeProcessor... Generating docs for compound anatomist::PaintStrategy... Generating docs for compound anatomist::PointPaintStrategy... Generating docs for compound anatomist::SquarePaintStrategy... Generating docs for compound anatomist::DiskPaintStrategy... Generating docs for compound anatomist::BallPaintStrategy... Generating docs for compound anatomist::PaintActionSharedData... Generating docs for compound anatomist::PaintAction... Generating docs for compound anatomist::RoiBlobSegmentationAction... Generating docs for compound anatomist::PaintControl... Generating docs for compound anatomist::RoiLevelSetControl... Generating docs for compound anatomist::RoiLabelNamingControl... Generating docs for compound anatomist::RoiManagementActionSharedData... Generating docs for compound anatomist::RoiManagementAction... Generating docs for compound anatomist::RoiBaseModule... Generating docs for compound anatomist::CreateGraphCommand... Generating docs for compound anatomist::GetConnThresholdCommand... Generating docs for compound anatomist::SetConnThresholdCommand... Generating docs for compound anatomist::AddNodeCommand... Generating docs for compound anatomist::PaintParamsCommand... Generating docs for compound anatomist::RoiDynSegmentAction... Generating docs for compound anatomist::RoiMorphoMathAction... Generating docs for compound anatomist::RoiDynSegmentControl... Generating docs for compound anatomist::RoiAlgoModule... Generating docs for compound anatomist::HistogramModule... Generating docs for namespace anatomist::internal Generating docs for compound anatomist::internal::ColorTraitsType... Generating docs for compound anatomist::internal::PaletteWinExtensionActions... Generating docs for compound anatomist::internal::VectorFieldCoordSpinBox... Generating docs for compound anatomist::internal::AGraphicsView... Generating docs for compound anatomist::internal::AGraphicsScene... Generating docs for compound anatomist::internal::TransformerActionData... Generating docs for compound anatomist::internal::NoDragSlider... Generating docs for compound anatomist::internal::CommandReader_Bridge... Generating docs for namespace carto Generating docs for compound carto::GLWidget... Generating docs for namespace Vr Generating docs for compound Vr::Creator... Generating docs for compound Vr::CubeZBuffer... Generating docs for compound Vr::MIPShader... Generating docs for compound Vr::MPVRShader... Generating docs for compound Vr::RfmtShader... Generating docs for compound Vr::Shader... Generating docs for compound Vr::ShaderFactory... Generating docs for compound Vr::Slicing... Generating docs for compound Vr::SumShader... Generating docs for compound Vr::Vector3d... Generating docs for compound Vr::VRShader... Generating docs for compound Vr::VrSingleton... Generating graph info page... Generating directory documentation... Generating dependency graph for directory anatomist/action Generating dependency graph for directory anatomist Generating dependency graph for directory anatomist/application Generating dependency graph for directory anatomist/browser Generating dependency graph for directory anatomist/bucket Generating dependency graph for directory anatomist/color Generating dependency graph for directory anatomist/commands Generating dependency graph for directory anatomist/constrainteditor Generating dependency graph for directory anatomist/control Generating dependency graph for directory anatomist/controler Gener/casa/host/build/include/anatomist/application/anatomist_doc.h:41: warning: image file anatomist.png is not found in IMAGE_PATH: assuming external image. /casa/host/build/include/anatomist/application/anatomist_doc.h:41: warning: image file anatomist.png is not found in IMAGE_PATH: assuming external image. [ 92%] Generating AimsFoldArgAtt help file ... [ 92%] Generating AimsFrontDistanceMap help file ... ating dependency graph for directory anatomist/erpio Generating dependency graph for directory anatomist/graph Generating dependency graph for directory anatomist/hierarchy Generating dependency graph for directory anatomist/interface Generating dependency graph for directory anatomist/interpoler Generating dependency graph for directory anatomist/landmark Generating dependency graph for directory anatomist/mobject Generating dependency graph for directory anatomist/module Generating dependency graph for directory anatomist/object Generating dependency graph for directory anatomist/processor Generating dependency graph for directory anatomist/reference Generating dependency graph for directory anatomist/selection Generating dependency graph for directory anatomist/sparsematrix Generating dependency graph for directory anatomist/stdmod Generating dependency graph for directory anatomist/surface Generating dependency graph for directory anatomist/surfmatcher Generating dependency graph for directory anatomist/volume Generating dependency graph for directory anatomist/window Generating dependency graph for directory anatomist/window3D Generating dependency graph for directory anatomist/winhisto Generating dependency graph for directory anatomist/winprof Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... lookup cache used 18411/65536 hits=112114 misses=22457 finished... [ 92%] Built target anatomist-doxygen [ 92%] Generating AimsGaussianSmoothing help file ... [ 92%] Generating AimsGaussianSmoothing1d help file ... [ 92%] Built target primatologist-gpl-doxygen [ 92%] Generating AimsGraphMesh help file ... [ 92%] Generating AimsGraphTransferLabels help file ... [ 92%] Built target constellation-doxygen [ 92%] Generating AimsGTMDump help file ... [ 92%] Generating AimsHippocampicReferential help file ... [ 92%] Generating AimsIcmSpaghetti help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,221::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,221::INFO::Found '3' process(es) in 'deepsulci.sulci_labeling.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,221::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,222::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,223::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.training.SulciDeepTraining'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,224::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,224::INFO::process: '3' files written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,224::INFO::Writing module 'sulci_labeling' index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:53,224::INFO::Index: an index has been written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling. [ 92%] Generating AimsIcmSpaghettiN help file ... [ 92%] Generating AimsIcosaList help file ... [ 92%] Built target cortical_surface-doxygen [ 92%] Generating AimsImageGLBlobStats help file ... [ 92%] Built target aims-free-doc [ 92%] Generating AimsImagePrimalSketch help file ... [ 92%] Create "share/doc/5.2" [ 92%] Built target anatomist-free-devdoc [ 92%] Generating AimsImageScaleSpace help file ... [ 92%] Generating AimsImageSmoothing help file ... [ 92%] Generating AimsParameterize2DImageDomain help file ... [ 92%] Generating AimsInflate help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:54,459::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'. [ 92%] Built target pyanatomist-doxygen [ 92%] Generating AimsLightenAtlas help file ... [ 92%] Generating AimsMask help file ... [ 92%] Create "share/doc/5.2" [ 92%] Generating AimsMeanCurvFlow help file ... [ 92%] Built target highres-cortex-devdoc /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:54,517::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:54,579::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:54,579::INFO::Summary: '14' files written for module 'capsul'. [ 92%] Generating AimsMedianSmoothing help file ... [ 92%] Create "share/doc/5.2" [ 92%] Generating AimsSmoothing help file ... [ 92%] Built target sulci-nonfree-devdoc [ 92%] Create "share/doc/5.2" [ 92%] Built target brainrat-private-devdoc [ 92%] Generating AimsMerge help file ... [ 92%] Generating AimsMesh help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:55,371::INFO::Found '14' pipeline(s) in 'morphologist.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:55,371::INFO::Found '40' process(es) in 'morphologist.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:55,371::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'... [ 92%] Generating AimsMesh2Ascii help file ... [ 92%] Generating AimsMesh2SSGraph help file ... [ 92%] Generating AimsMesh2Sphere help file ... [ 92%] Generating AimsMeshAverage help file ... [ 92%] Built target bioprocessing-doxygen [ 92%] Generating AimsMeshBlobExtract help file ... [ 92%] Create "share/doc/5.2" [ 92%] Generating AimsMeshBrain help file ... [ 92%] Built target primatologist-gpl-devdoc [ 92%] Generating AimsMeshCC2Arg help file ... [ 92%] Create "share/doc/5.2" [ 92%] Built target constellation-nonfree-devdoc [ 92%] Create "share/doc/5.2" /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:56,035::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'. [ 92%] Built target cortical_surface-nonfree-devdoc [ 92%] Generating AimsMeshCheckClosed help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:56,078::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:56,078::INFO::Summary: '14' files written for module 'capsul'. [ 92%] Generating AimsMeshCleaner help file ... [ 92%] Generating AimsMeshConnectedComponent help file ... [ 92%] Built target anatomist-free-doc [ 92%] Built target highres-cortex-doc [ 92%] Built target sulci-nonfree-doc [ 92%] Built target brainrat-private-doc [ 92%] Built target primatologist-gpl-doc [ 92%] Built target constellation-nonfree-doc [ 92%] Generating AimsMeshCurvature help file ... [ 92%] Built target cortical_surface-nonfree-doc [ 92%] Generating AimsMeshDecimation help file ... [ 92%] Generating AimsMeshDistance help file ... [ 92%] Create "share/doc/5.2" [ 92%] Built target anatomist-gpl-devdoc [ 92%] Generating AimsMeshGeodesicDepth help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:56,841::INFO::Found '14' pipeline(s) in 'morphologist.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:56,841::INFO::Found '40' process(es) in 'morphologist.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:56,842::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'... [ 92%] Create "share/doc/5.2" [ 92%] Built target bioprocessing-devdoc [ 92%] Generating AimsMeshLineMeasurement help file ... [ 92%] Generating AimsMeshParcellation2VolumeParcellation help file ... [ 92%] Generating AimsMeshSmoothing help file ... [ 92%] Generating AimsMeshWhite help file ... [ 92%] Generating AimsMIRegister help file ... [ 92%] Generating AimsMoment help file ... [ 92%] Built target anatomist-gpl-doc [ 92%] Generating AimsMorphoMath help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:12:57,870::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'. [ 92%] Generating AimsNormWithRegion help file ... [ 92%] Built target bioprocessing-doc [ 92%] Generating AimsParamCorrectDti help file ... [ 92%] Generating AimsPCAfilter help file ... [ 92%] Generating AimsPCAloc help file ... [ 92%] Generating AimsPCAloc2 help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,552::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,562::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'... [ 92%] Generating AimsRefineMesh help file ... [ 92%] Generating AimsRegisterBMEstimate help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,618::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,626::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,665::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,733::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,749::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,786::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,800::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,809::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'... [ 92%] Generating AimsRegisterFFDFromCoordImages help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:58,817::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'... [ 92%] Generating AimsRegisterFFDApply help file ... [ 92%] Generating AimsReplaceLevel help file ... [ 92%] Generating AimsSegmentsToMesh help file ... [ 92%] Generating AimsSNR help file ... [ 92%] Generating AimsSphereDistribution help file ... [ 92%] Generating AimsSplitArray help file ... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,778::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,800::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,820::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,820::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,820::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,822::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,823::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,824::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,826::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,828::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,828::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,830::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,830::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,831::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,832::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,833::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,835::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,842::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,842::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,843::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,844::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,844::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,845::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,846::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,846::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,847::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,848::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,848::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,849::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,849::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,850::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,851::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,852::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,852::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,853::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,854::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,855::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,856::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,857::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,858::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,859::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,865::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,867::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,867::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,868::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,869::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,869::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,869::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,977::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:12:59,982::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,034::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,041::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,078::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,133::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,143::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,166::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,177::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,185::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,192::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'... [ 92%] Generating AimsTalairachTransform help file ... generating CAPSUL processes docs... ['/usr/bin/python3.10', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist', '--schema'] loading pickled environment... done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... loading intersphinx inventory from doc/morphologist-ui-5.2/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'doc/morphologist-ui-5.2/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/doc/morphologist-ui-5.2/objects.inv' /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,936::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,949::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,958::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,958::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,958::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,959::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,960::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,961::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,961::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,962::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,963::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,964::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,964::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,964::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,965::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,966::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,967::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,971::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,971::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,972::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,972::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,973::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,974::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,974::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,975::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,975::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,976::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,976::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,977::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,978::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,979::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,979::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,980::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,980::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,981::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'... [autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, sulpated.rst /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,982::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,982::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,984::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,984::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,985::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,985::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,989::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,990::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,990::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,991::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,992::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,992::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/index.rst'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:00,992::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 57 source files that are out of date updating environment: 0 added, 57 changed, 0 removed reading sources... [ 1%] process_docs/morphologist/capsul/index reading sources... [ 3%] process_docs/morphologist/capsul/pipeline/index reading sources... [ 5%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist [ 92%] Generating AimsTensorExtract help file ... reading sources... [ 7%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline reading sources... [ 8%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation reading sources... [ 10%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline reading sources... [ 12%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization reading sources... [ 14%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped reading sources... [ 15%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline reading sources... [ 17%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.sulcilabelling.SulciLabelling reading sources... [ 19%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM reading sources... [ 21%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLNormalization reading sources... [ 22%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline reading sources... [ 24%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.morphologist.Morphologist reading sources... [ 26%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMNormalization reading sources... [ 28%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline reading sources... [ 29%] process_docs/morphologist/capsul/process/index reading sources... [ 31%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.acpcorientation.AcpcOrientation reading sources... [ 33%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.aimsconverter.AimsConverter reading sources... [ 35%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims reading sources... [ 36%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainsegmentation.BrainSegmentation generating CAPSUL processes docs... ['/usr/bin/python3.10', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist', '--schema'] loading pickled environment... reading sources... [ 38%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainvolumes.brainvolumes reading sources... [ 40%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims reading sources... [ 42%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi reading sources... [ 43%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh reading sources... [ 45%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology reading sources... [ 47%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.histoanalysis.HistoAnalysis reading sources... [ 49%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.importt1mri.ImportT1MRI reading sources... [ 50%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.morpho_report.morpho_report reading sources... [ 52%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.morphologistprocess.morphologistProcess reading sources... [ 54%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister done loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv... reading sources... [ 56%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_baladin.Normalization_Baladin loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv... loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv... reading sources... [ 57%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit reading sources... [ 59%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit reading sources... [ 61%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit reading sources... [ 63%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit reading sources... [ 64%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.pialmesh.PialMesh reading sources... [ 66%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.reorientanatomy.ReorientAnatomy reading sources... [ 68%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.scalpmesh.ScalpMesh reading sources... [ 70%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.skullstripping.skullstripping reading sources... [ 71%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.splitbrain.SplitBrain reading sources... [ 73%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims reading sources... [ 75%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcigraph.SulciGraph reading sources... [ 77%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject reading sources... [ 78%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN reading sources... [ 80%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal reading sources... [ 82%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal reading sources... [ 84%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov [ 92%] Generating AimsTensorSNR help file ... reading sources... [ 85%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton reading sources... [ 87%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection reading sources... [ 89%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation reading sources... 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[ 96%] process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView [autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 57 source files that are out of date updating environment: 0 added, 57 changed, 0 removed reading sources... 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[100%] process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in 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/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst looking for now-outdated files... none found pickling environment... done checking consistency... /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:10: WARNING: Citation [FISCHER2012] is not referenced. /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:118: WARNING: Citation [PERROT2009] is not referenced. /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:120: WARNING: Citation [PERROT2011] is not referenced. /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:129: WARNING: Citation [TUCHOLKA2008] is not referenced. /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:134: WARNING: Citation [KELLER2009] is not referenced. /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:139: WARNING: Citation [VAROQUAUX2010] is not referenced. done preparing documents... done writing output... [ 1%] index reading sources... [ 7%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline reading sources... [ 8%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation writing output... [ 3%] process_docs/morphologist/capsul/index writing output... [ 5%] process_docs/morphologist/capsul/pipeline/index writing output... [ 6%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist reading sources... [ 10%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline reading sources... [ 12%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization reading sources... [ 14%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped writing output... 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[ 33%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.aimsconverter.AimsConverter writing output... [ 79%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:02,830::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:02,830::INFO::Found '6' process(es) in 'deepsulci.pattern_classification.capsul'. /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:02,830::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'... /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:13:02,831::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'... writing output... 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[100%] Built target bv_commands_doc [100%] Create "share/doc/2.6" [100%] Create "share/doc/5.2" [100%] Built target capsul-devdoc [100%] Built target morpho-deepsulci-devdoc [100%] Create "share/doc/5.2" [100%] Built target capsul-doc [100%] Built target morphologist-gpl-devdoc [100%] Built target morpho-deepsulci-doc [100%] Create "share/doc/5.2" [100%] Built target devdoc [100%] Built target morphologist-gpl-usrdoc [100%] Built target usrdoc [100%] Built target morphologist-gpl-doc Generating BrainVISA processes documentation [100%] Built target bv_ontology_doc [100%] Built target bv_doc_index [100%] Built target axon-doc [100%] Built target doc bv_maker summary: OK step doc: /casa/host/build, started: 2025/06/26 06:12, stopped: 2025/06/26 06:15 All went good. Finished: SUCCESS