Console Output
Skipping 696 KB..
Full Log> Warning: Could not resolve keysym XF86CameraAccessToggle
> Warning: Could not resolve keysym XF86NextElement
> Warning: Could not resolve keysym XF86PreviousElement
> Warning: Could not resolve keysym XF86AutopilotEngageToggle
> Warning: Could not resolve keysym XF86MarkWaypoint
> Warning: Could not resolve keysym XF86Sos
> Warning: Could not resolve keysym XF86NavChart
> Warning: Could not resolve keysym XF86FishingChart
> Warning: Could not resolve keysym XF86SingleRangeRadar
> Warning: Could not resolve keysym XF86DualRangeRadar
> Warning: Could not resolve keysym XF86RadarOverlay
> Warning: Could not resolve keysym XF86TraditionalSonar
> Warning: Could not resolve keysym XF86ClearvuSonar
> Warning: Could not resolve keysym XF86SidevuSonar
> Warning: Could not resolve keysym XF86NavInfo
Errors from xkbcomp are not fatal to the X server
[ 90%] Generating AimsRefineMesh help file ...
[ 90%] Generating AimsRegisterBMEstimate help file ...
[autosummary] generating autosummary for: index.rst, pyaims_aimsalgo.rst, pyaims_aimsalgo_examples.rst, pyaims_algo.rst, pyaims_api_aims.rst, pyaims_api_aimsalgo.rst, pyaims_examples.rst, pyaims_examples_advanced.rst, pyaims_highlevel.rst, pyaims_lowlevel.rst, pyaims_modules_api.rst, pyaims_tutorial.rst, pyaims_tutorial_nb.ipynb, volume_orientation.ipynb
[ 90%] Generating AimsRegisterFFDFromCoordImages help file ...
[ 90%] Generating AimsReplaceLevel help file ...
[ 90%] Generating AimsRegisterFFDApply help file ...
[ 90%] Generating AimsSegmentsToMesh help file ...
[ 90%] Generating AimsSNR help file ...
[ 90%] Generating AimsSphereDistribution help file ...
[ 90%] Generating AimsSplitArray help file ...
/usr/lib/python3/dist-packages/sphinx_gallery/sphinx_compatibility.py:71: RemovedInSphinx80Warning: The alias 'sphinx.util.status_iterator' is deprecated, use 'sphinx.util.display.status_iterator' instead. Check CHANGES for Sphinx API modifications.
status_iterator = sphinx.util.status_iterator
[ 90%] Generating AimsSubSampling help file ...
WARNING: multiple files found for the document "auto_examples/activateaction": ['auto_examples/activateaction.ipynb', 'auto_examples/activateaction.rst', 'auto_examples/activateaction.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/activateaction.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/addMenuEntry": ['auto_examples/addMenuEntry.ipynb', 'auto_examples/addMenuEntry.rst', 'auto_examples/addMenuEntry.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/addMenuEntry.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/aimsvolumetest": ['auto_examples/aimsvolumetest.ipynb', 'auto_examples/aimsvolumetest.rst', 'auto_examples/aimsvolumetest.py.md5', 'auto_examples/aimsvolumetest.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/aimsvolumetest.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/anagraphannotate": ['auto_examples/anagraphannotate.ipynb', 'auto_examples/anagraphannotate.py', 'auto_examples/anagraphannotate.rst', 'auto_examples/anagraphannotate.py.md5']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/anagraphannotate.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/bvProcessSocket": ['auto_examples/bvProcessSocket.rst', 'auto_examples/bvProcessSocket.ipynb', 'auto_examples/bvProcessSocket.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/bvProcessSocket.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/control": ['auto_examples/control.ipynb', 'auto_examples/control.xpm', 'auto_examples/control.py', 'auto_examples/control.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/control.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/customcommands": ['auto_examples/customcommands.py', 'auto_examples/customcommands.ipynb', 'auto_examples/customcommands.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/customcommands.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/customopenglobject": ['auto_examples/customopenglobject.py.md5', 'auto_examples/customopenglobject.ipynb', 'auto_examples/customopenglobject.rst', 'auto_examples/customopenglobject.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/customopenglobject.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/ellipsoid": ['auto_examples/ellipsoid.rst', 'auto_examples/ellipsoid.py', 'auto_examples/ellipsoid.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/ellipsoid.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/events": ['auto_examples/events.rst', 'auto_examples/events.py', 'auto_examples/events.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/events.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/fusion": ['auto_examples/fusion.rst', 'auto_examples/fusion.py', 'auto_examples/fusion.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/fusion.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/fusion3D": ['auto_examples/fusion3D.py', 'auto_examples/fusion3D.ipynb', 'auto_examples/fusion3D.py.md5', 'auto_examples/fusion3D.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/fusion3D.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/graph": ['auto_examples/graph.ipynb', 'auto_examples/graph.py', 'auto_examples/graph.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/graph.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/graph_building": ['auto_examples/graph_building.ipynb', 'auto_examples/graph_building.py.md5', 'auto_examples/graph_building.py', 'auto_examples/graph_building.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/graph_building.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/meshtest": ['auto_examples/meshtest.py', 'auto_examples/meshtest.rst', 'auto_examples/meshtest.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/meshtest.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/nomenclatureselection": ['auto_examples/nomenclatureselection.py', 'auto_examples/nomenclatureselection.ipynb', 'auto_examples/nomenclatureselection.rst', 'auto_examples/nomenclatureselection.py.md5']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/nomenclatureselection.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/selection": ['auto_examples/selection.ipynb', 'auto_examples/selection.rst', 'auto_examples/selection.py.md5', 'auto_examples/selection.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/selection.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/sphere": ['auto_examples/sphere.py', 'auto_examples/sphere.ipynb', 'auto_examples/sphere.rst']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/sphere.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/volumeMeasures": ['auto_examples/volumeMeasures.ipynb', 'auto_examples/volumeMeasures.rst', 'auto_examples/volumeMeasures.py']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/volumeMeasures.ipynb' for the build.
WARNING: multiple files found for the document "auto_examples/volumetest": ['auto_examples/volumetest.py.md5', 'auto_examples/volumetest.py', 'auto_examples/volumetest.rst', 'auto_examples/volumetest.ipynb']
Use '/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/sphinx/auto_examples/volumetest.ipynb' for the build.
[ 90%] Generating AimsSubTensor help file ...
Qt offscreen does not work.
Cannot allocate an OpenGL context. Using Xvfb if possible.
using DISPLAY=:2
VirtualGL found.
global modules: /casa/host/build/share/anatomist-5.2/python_plugins
home modules: /casa/home/.anatomist/python_plugins
loading module ana_image_math
loading module save_resampled
loading module modelGraphs
loading module volumepalettes
loading module valuesplotwindow
loading module gradientpalette
loading module histogram
loading module gltf_io
loading module foldsplit
loading module anacontrolmenu
loading module meshsplit
loading module paletteViewer
loading module simple_controls
loading module bundles_small_brains
loading module bundles_split_by_cortical_regions
loading module measure
loading module palettecontrols
loading module selection
loading module bsa_proba
loading module statsplotwindow
loading module profilewindow
loading module infowindow
all python modules loaded
Anatomist started.
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/soma-base-5.2/sphinx/objects.inv'
loading intersphinx inventory from https://docs.python.org/3.12/objects.inv...
[ 90%] Generating AimsTMStarget help file ...
[ 90%] Generating AimsSumFrame help file ...
[ 90%] Generating AimsSulcusSPAM help file ...
[ 90%] Generating AimsTalairachTransform help file ...
[ 90%] Generating AimsTensorExtract help file ...
[ 90%] Built target soma-base-sphinx
[ 90%] Generating AimsTensorSNR help file ...
[ 90%] Generating AimsTexture2Primal help file ...
[ 90%] Create "share/doc/5.3"
[ 90%] Generating AimsTextureRegularization help file ...
[ 90%] Built target soma-base-devdoc
[ 90%] Generating AimsTextureAverage help file ...
[ 90%] Generating AimsTextureDerivative help file ...
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources...
looking for now-outdated files... none found
no targets are out of date.
build succeeded, 2 warnings.
The HTML pages are in ../../../../share/doc/pyaims-5.2/sphinx.
[ 90%] Generating AimsTextureDilation help file ...
[ 90%] Built target soma-base-doc
[ 90%] Generating AimsTextureErosion help file ...
[autosummary] generating autosummary for: ana_notebook.ipynb, auto_examples/activateaction.ipynb, auto_examples/addMenuEntry.ipynb, auto_examples/aimsvolumetest.ipynb, auto_examples/anagraphannotate.ipynb, auto_examples/bvProcessSocket.ipynb, auto_examples/control.ipynb, auto_examples/customcommands.ipynb, auto_examples/customopenglobject.ipynb, auto_examples/ellipsoid.ipynb, ..., pyanatomist_examples.rst, pyanatomist_headless.rst, pyanatomist_howto.rst, pyanatomist_notebook.rst, pyanatomist_pyaims_tutorial.rst, pyanatomist_socket.rst, pyanatomist_threaded.rst, pyanatomist_tutorial.rst, pyanatomist_tutorial_nb.ipynb, pyanatomist_wip.rst
[ 90%] Generating AimsTexturePrimalSketch help file ...
[ 90%] Generating AimsTextureScaleSpace help file ...
[ 90%] Built target axon-sphinx
[ 90%] Generating AimsTextureSmoothing help file ...
WARNING: Failed to import capsul.qt_apps.main_window.
Possible hints:
* ImportError: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py)
* AttributeError: module 'capsul.qt_apps' has no attribute 'main_window'
WARNING: Failed to import capsul.qt_apps.pipeline_viewer_app.
Possible hints:
* ImportError: cannot import name 'QtWebKit' from 'soma.qt_gui.qt_backend' (/casa/host/build/python/soma/qt_gui/qt_backend.py)
* AttributeError: module 'capsul.qt_apps' has no attribute 'pipeline_viewer_app'
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 1 source files that are out of date
updating environment: 0 added, 2 changed, 0 removed
[2Kreading sources... [ 50%] api/qt_apps
WARNING: Failed to import anatomist.socket.api.
Possible hints:
* AttributeError: module 'anatomist.socket' has no attribute 'api'
* ImportError: cannot import name 'qApp' from 'PyQt6.Qt' (/usr/lib/python3/dist-packages/PyQt6/QtGui.abi3.so)
WARNING: Failed to import anatomist.altas_viewer.
Possible hints:
* AttributeError: module 'anatomist' has no attribute 'altas_viewer'
* ModuleNotFoundError: No module named 'anatomist.altas_viewer'
generating gallery...
Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files.
[ 90%] Create "share/doc/5.2"
[ 90%] Built target axon-devdoc
[ 90%] Generating AimsTextureThreshold help file ...
[2Kgenerating gallery for auto_examples... [ 4%] volumetest.py
[2Kgenerating gallery for auto_examples... [ 9%] nomenclatureselection.py
[2Kgenerating gallery for auto_examples... [ 13%] graph.py
[ 90%] Generating AimsTextureVoronoi help file ...
[ 90%] Generating AimsTopologicalClassification help file ...
[ 90%] Generating AimsValidateFit help file ...
[ 90%] Generating AimsVeinExtraction help file ...
[ 90%] Generating AimsVFilter help file ...
[ 90%] Generating AimsVoiStat help file ...
[ 90%] Generating AimsVol2Tex help file ...
WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/graph.py failed to execute correctly: Traceback (most recent call last):
File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/graph.py", line 50, in <module>
if QtGui.qApp.startingUp():
^^^^^^^^^^
AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp'
[ 90%] Generating AimsVoronoi help file ...
[ 90%] Generating AimsBundleSelectCenter help file ...
[ 90%] Generating AimsZCat help file ...
[ 90%] Generating AimsFovSplit help file ...
[ 90%] Generating AimsSumPETFrame help file ...
[2Kgenerating gallery for auto_examples... [ 17%] customcommands.py
[2Kgenerating gallery for auto_examples... [ 22%] events.py
[2Kgenerating gallery for auto_examples... [ 26%] addMenuEntry.py
[2Kgenerating gallery for auto_examples... [ 30%] fusion3D.py
[2Kgenerating gallery for auto_examples... [ 35%] selection.py
[2Kgenerating gallery for auto_examples... [ 39%] activateaction.py
[2Kgenerating gallery for auto_examples... [ 43%] graph_building.py
[2Kgenerating gallery for auto_examples... [ 48%] bvProcessSocket.py
[ 90%] Generating AimsSiemensEPI2Volume help file ...
[ 90%] Generating AimsRegisterFFDEstimate help file ...
[ 90%] Generating anatomist-bin help file ...
[ 90%] Generating mkhierarchy-anatomist help file ...
[ 90%] Generating VipBiasCorrection help file ...
[ 90%] Generating VipClosing help file ...
[ 90%] Generating VipCovarianceMatrix help file ...
[ 90%] Generating VipDeriche help file ...
[ 90%] Generating VipDilation help file ...
[2Kreading sources... [100%] tutorial/capsul_tutorial
[ 90%] Generating VipDistanceMap help file ...
[ 90%] Generating VipErosion help file ...
[ 90%] Generating VipExtEdge help file ...
[ 90%] Generating VipFileDump help file ...
[ 90%] Generating VipFoldArg help file ...
[ 90%] Generating VipFoetusHomotopicSnake help file ...
[ 90%] Generating VipGeometry help file ...
[ 90%] Generating VipFoldArgAtt help file ...
[ 90%] Generating VipGetBrain help file ...
[ 90%] Generating VipGetHead help file ...
[ 90%] Generating VipGreyStatFromClassif help file ...
[ 90%] Generating VipGreyWhiteClassif help file ...
[ 90%] Generating VipHistoAnalysis help file ...
[ 90%] Generating VipHomotopic help file ...
[ 90%] Generating VipHomotopicSnake help file ...
[ 90%] Generating VipHyste help file ...
[ 90%] Generating VipLabelArg help file ...
[ 90%] Generating VipLabelContour help file ...
[ 90%] Generating VipLabelMatching help file ...
[ 90%] Generating VipLabelOverlap help file ...
[2Kgenerating gallery for auto_examples... [ 52%] aimsvolumetest.py
[2Kgenerating gallery for auto_examples... [ 57%] meshtest.py
[ 90%] Generating VipListLabel help file ...
[ 90%] Generating VipMerge help file ...
[ 90%] Generating VipMatching help file ...
[ 90%] Generating VipMinimizeInformation help file ...
[ 90%] Generating VipMoment help file ...
[ 90%] Generating VipOpenFold help file ...
[ 90%] Generating VipOpening help file ...
[ 90%] Generating VipPca help file ...
[ 90%] Generating VipSetPointValue help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:20,284::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'.
[ 90%] Generating VipSkeleton help file ...
[ 90%] Generating VipSplitBrain help file ...
WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/meshtest.py failed to execute correctly: Traceback (most recent call last):
File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/meshtest.py", line 46, in <module>
from soma.qt_gui.qt_backend.QtGui import qApp
ImportError: cannot import name 'qApp' from 'PyQt6.QtGui' (/usr/lib/python3/dist-packages/PyQt6/QtGui.abi3.so)
[ 90%] Generating VipSwapEndian help file ...
[ 90%] Generating VipT1BiasCorrection help file ...
[ 90%] Generating VipTalairachCoordinates help file ...
[2Kgenerating gallery for auto_examples... [ 61%] sphere.py
[ 90%] Generating VipTalairachTransform help file ...
[2Kgenerating gallery for auto_examples... [ 65%] fusion.py
[ 90%] Generating VipTopoClassification help file ...
[ 90%] Generating VipTopoClassifMeaning help file ...
[2Kgenerating gallery for auto_examples... [ 70%] ellipsoid.py
[ 90%] Generating vip_test_well_composed_configurations help file ...
[ 90%] Generating vip_test_well_composed_topology help file ...
[ 90%] Generating readFolds help file ...
[ 90%] Generating siChangeModels help file ...
[ 90%] Generating siDivNameList help file ...
[ 90%] Generating siCopyNames help file ...
QOpenGLWidget is not supported on this platform.
[ 90%] Generating siEnergy help file ...
[ 90%] Generating siDomTrain help file ...
QOpenGLWidget is not supported on this platform.
[ 90%] Generating siErrorStats help file ...
[ 90%] Generating siError help file ...
This plugin does not support propagateSizeHints()
This plugin does not support raise()
[ 90%] Generating siFlip help file ...
[ 90%] Generating siFunctionalGraphs help file ...
[ 90%] Generating sigraph-config help file ...
[ 90%] Generating siGraph2Label help file ...
[ 90%] Generating siLearn help file ...
[ 90%] Generating siLyxErrors help file ...
[ 90%] Generating siMakeColoredHierarchy help file ...
[ 90%] Generating siMakeModel help file ...
[ 90%] Generating siMakeParcellationHierarchy help file ...
[ 90%] Generating siMergeModels help file ...
WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/ellipsoid.py failed to execute correctly: Traceback (most recent call last):
File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/ellipsoid.py", line 135, in <module>
QtGui.qApp.processEvents()
^^^^^^^^^^
AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp'
[ 90%] Generating siMeshSulciOperture help file ...
[ 90%] Generating siMeshSulciProjection help file ...
[2Kgenerating gallery for auto_examples... [ 74%] control.py
[ 90%] Generating siMkModelEdges help file ...
[ 90%] Generating siMorpho help file ...
[ 90%] Generating siMultilabelCompare help file ...
[ 90%] Generating siParcellation help file ...
[ 90%] Generating siPIDcommand help file ...
[ 90%] Generating siPutTextureInModel help file ...
[ 90%] Generating siRelax help file ...
WARNING: /casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/control.py failed to execute correctly: Traceback (most recent call last):
File "/casa/host/src/anatomist/anatomist-gpl/master/pyanatomist/doc/examples/control.py", line 56, in <module>
if QtGui.qApp.startingUp() and 'IPython' not in sys.modules:
^^^^^^^^^^
AttributeError: module 'PyQt6.QtGui' has no attribute 'qApp'
[ 90%] Generating siRevert help file ...
[ 90%] Generating siSulcalParcellation help file ...
[ 90%] Generating siTestModels help file ...
[ 90%] Generating siTriangModel help file ...
[2Kgenerating gallery for auto_examples... [ 78%] anagraphannotate.py
[2Kgenerating gallery for auto_examples... [ 83%] customopenglobject.py
[2Kgenerating gallery for auto_examples... [ 87%] volumeMeasures.py
[ 90%] Generating siTryGauss help file ...
[2Kgenerating gallery for auto_examples... [ 91%] anaevensimplerviewer.py
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:22,427::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:22,581::INFO::Pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabelling.SulciLabelling.png'.
This plugin does not support propagateSizeHints()
[ 90%] Generating AimsReadDpy help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:22,688::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:22,862::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:22,958::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:23,178::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:23,280::INFO::Pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.brainorientation.BrainOrientation.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:23,494::INFO::Pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.brainorientation.BrainOrientation.png'.
QOpenGLWidget is not supported on this platform.
QOpenGLWidget is not supported on this platform.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:23,584::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'.
QOpenGLWidget is not supported on this platform.
QOpenGLWidget is not supported on this platform.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:23,609::INFO::Pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.png'.
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:23,741::INFO::Pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.png'.
[ 90%] Generating bioReadDpy help file ...
[ 90%] Generating AimsAdaptiveSelVoxel help file ...
PyAnatomist Module present
PythonLauncher::runModules()
Multitexturing present
function glActiveTexture found.
function glClientActiveTexture found.
function glBlendEquation found.
function glTexImage3D found.
function glMultiTexCoord3f found.
function glBindFramebuffer found.
function glBindRenderbuffer found.
function glFramebufferTexture2D found.
function glGenFramebuffers found.
function glGenRenderbuffers found.
function glFramebufferRenderbuffer found.
function glRenderbufferStorage found.
function glCheckFramebufferStatus found.
function glDeleteRenderbuffers found.
function glDeleteFramebuffers found.
Number of texture units: 8
function glUniform1f found.
function glUniform1i found.
function glUniform4fv found.
function glGetUniformLocation found.
function glMultTransposeMatrixf found.
function glAttachShader found.
function glDetachShader found.
function glCompileShader found.
function glCreateProgram found.
function glCreateShader found.
function glDeleteProgram found.
function glDeleteShader found.
function glGetProgramiv found.
function glGetShaderiv found.
function glLinkProgram found.
function glShaderSource found.
function glUseProgram found.
GL_ARB_shadow present
GL_SGIX_shadow extension not available
GL_SGIX_depth_texture extension not available
GL_ARB_depth_texture extension present
GL_ARB_texture_cube_map extension present
GL_EXT_texture_cube_map extension present
Number of texture units: 8
[ 90%] Generating AimsAxialProjection help file ...
[ 90%] Generating AimsBorderGenerate help file ...
[ 90%] Generating AimsBorderInfo help file ...
QPainter::begin: Paint device returned engine == 0, type: 1
QPainter::setRenderHint: Painter must be active to set rendering hints
QPainter::setRenderHint: Painter must be active to set rendering hints
QPainter::worldTransform: Painter not active
QPainter::save: Painter not active
[ 90%] Generating AimsCenterSlices help file ...
[ 90%] Generating AimsFeaturesExtraction help file ...
[ 90%] Generating AimsFovAdapt help file ...
[ 90%] Generating AimsGL2Activity help file ...
[ 90%] Generating AimsIndividStackSlices help file ...
[ 90%] Generating AimsInterSliceNormalize help file ...
Process2 execution, a: 0.000000, b: blop
[ 90%] Generating AimsMidPlaneAlign help file ...
[ 90%] Generating AimsManualRegistration help file ...
[ 90%] Generating bioDetectSlices help file ...
[ 90%] Generating bioModelClassify help file ...
[ 90%] Generating bioModelGenerate help file ...
Process2 execution, a: 0.000000, b: yup
[ 90%] Generating AimsAffineRegister help file ...
[ 90%] Generating AimsAmyloidDensity help file ...
[ 90%] Generating AimsAmyloidLoadAvgDistNeigh help file ...
[ 90%] Generating AimsAmyloidLoadInvSurfVor help file ...
Segmentation fault (core dumped)
[ 90%] Built target anatomist-gpl-sphinx
[ 90%] Generating AimsAmyloidDetection help file ...
[ 90%] Generating AimsAmyloidFiltering help file ...
[ 90%] Generating AimsAmyloidMRIDetection help file ...
[ 90%] Generating AimsAreaNbConnectCompRatio help file ...
[ 90%] Create "share/doc/5.2"
[ 90%] Generating AimsBinaryBoundingBox help file ...
[ 90%] Built target anatomist-gpl-devdoc
[ 90%] Generating AimsBorderCrop help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:25,138::INFO::Pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:25,432::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:25,646::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:25,876::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'.
[ 90%] Generating AimsBorderLineProj help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:26,420::INFO::Pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:26,728::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:26,904::INFO::Pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM.png'.
[ 90%] Generating AimsBinaryBorder help file ...
[ 90%] Generating AimsBoundingBoxCalculation help file ...
[ 90%] Generating AimsBoundingBoxExtraction help file ...
[ 90%] Built target anatomist-gpl-doc
[ 90%] Generating AimsComponentFeaturesProcess help file ...
[ 90%] Generating AimsComponentFeaturesVisualize help file ...
[ 90%] Generating AimsComponentFeaturesMapGenerate help file ...
[ 90%] Generating AimsCorrectImages help file ...
[ 90%] Generating AimsChannelProcess help file ...
[ 90%] Generating AimsCreateFieldsFromMotion help file ...
[ 90%] Generating AimsEntropicThresholding help file ...
[ 90%] Generating AimsEqualizer help file ...
[ 90%] Generating AimsFovCentering help file ...
[ 90%] Generating AimsGenerateVolume help file ...
[ 90%] Generating AimsGridCalibrate help file ...
[ 90%] Generating AimsGridGenerate help file ...
[ 90%] Generating AimsHeightFiltering help file ...
[ 90%] Generating AimsIndexCluster help file ...
[ 90%] Generating AimsIndividSlices help file ...
[ 90%] Generating AimsInterlaceVolumes help file ...
[ 90%] Generating AimsInterpolate help file ...
[ 90%] Generating AimsLabelReorder help file ...
[ 90%] Generating AimsMaskContour help file ...
[ 90%] Generating AimsMergeFFDLabels help file ...
[ 90%] Generating AimsMeshMatching help file ...
[ 90%] Built target aims-free-sphinx
[ 90%] Create "share/doc/5.2"
[ 90%] Built target aims-free-devdoc
[ 90%] Generating AimsMIBucketRegister help file ...
[ 90%] Generating AimsMidPlaneMask help file ...
[ 90%] Built target aims-free-doc
[ 90%] Generating AimsMosaic help file ...
[ 90%] Generating AimsMultiRecal help file ...
[ 90%] Generating AimsOverlapInfo help file ...
[ 90%] Generating AimsRebuildComp help file ...
[ 90%] Generating AimsResampleFromFieldsData help file ...
[ 90%] Generating AimsRgbToHsv help file ...
[ 90%] Generating AimsRoiOverlap help file ...
[ 90%] Generating AimsSamplingInfo help file ...
[ 90%] Generating AimsSegment2Modes help file ...
[ 90%] Generating AimsSeparateComp help file ...
[ 90%] Generating AimsStereologySampling help file ...
[ 90%] Generating AimsStereotaxy help file ...
[ 90%] Generating AimsSubSamplingConservative help file ...
[ 90%] Generating AimsWatershed help file ...
[ 90%] Generating AimsSeededWatershed help file ...
[ 90%] Generating bioCellEvaluate help file ...
[ 90%] Generating bioCellBoundingBoxesGenerate help file ...
[ 90%] Generating bioClusterStatistics help file ...
[ 90%] Generating bioComponentConnexe help file ...
[ 90%] Generating bioCorrectMissingLabels help file ...
[ 90%] Generating bioExtractAmyloidLoad help file ...
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[ 90%] Generating bioFindCellSeeds help file ...
[ 90%] Generating bioMacGetSingleBrain help file ...
[ 90%] Generating bioPrepareData4DlIndiv help file ...
Process2 execution, a: 0.000000, b: blop
[ 90%] Generating bioRenumberConnectComp help file ...
[ 90%] Generating bioStatDominanceAppli help file ...
[ 90%] Generating bioVoxelFeatures help file ...
[ 90%] Generating AimsAdaptiveGaussianSmoothing help file ...
[ 90%] Generating AimsEdgeExtract help file ...
[ 90%] Generating AimsExtremaMap help file ...
[ 90%] Generating AimsRegionGrowingExtrema help file ...
[ 90%] Generating AimsSigmaImageCalculate help file ...
[ 90%] Generating bioVoxelWiseStatistics help file ...
[ 90%] Generating AimsSegmentationEM help file ...
[ 90%] Generating AimsSelectGradPoints help file ...
[ 90%] Generating AimsRegisterQNEstimate help file ...
[ 90%] Generating bioKMeans help file ...
[ 90%] Generating AimsSparseMatrixSmoothing help file ...
[ 90%] Generating constelBundlesFiltering help file ...
[ 90%] Generating constelConnectionDensityTexture help file ...
[ 90%] Generating constelConnectivityMatrix help file ...
[ 90%] Generating constelFibersLengths help file ...
[ 90%] Generating constelMeanConnectivityProfileFromMatrix help file ...
[ 90%] Generating constelSelectBundlesFromNames help file ...
[ 90%] Generating constelSelectFibersFromMesh help file ...
[ 90%] Generating AimsConstraintCleaner help file ...
[ 90%] Generating AimsGyriStuff help file ...
[ 90%] Generating AimsCorticalReferential help file ...
[ 90%] Generating AimsMeshIsoLine help file ...
[ 90%] Generating AimsCorticalThickness help file ...
[ 90%] Generating AimsFunctionProjection help file ...
[ 90%] Generating AimsMeshMedianSurface help file ...
[ 90%] Generating AimsCoordinateGridMesh help file ...
[ 90%] Generating AimsCoordinatesTextureToMesh help file ...
[ 90%] Generating AimsCoordinatesToTexture help file ...
[ 90%] Generating AimsFlattenCortex help file ...
[ 90%] Generating AimsParameterizeGyri help file ...
[ 90%] Generating AimsParameterizeSulcus help file ...
[ 90%] Generating AimsPlotOnSPhericalAtlas help file ...
[ 90%] Generating AimsSulcusCorticalSnake help file ...
[ 90%] Generating AimsTextureToAtlas help file ...
[ 90%] Generating surfTexActivationSimulation help file ...
[ 90%] Generating surfStructuralAnalysis help file ...
[ 90%] Generating AimsCheck2DCoordinates help file ...
[ 90%] Generating AimsSulcusNormalizeDepthProfile help file ...
[ 90%] Generating AimsMeshToAtlas help file ...
[ 90%] Generating AimsConformalMapping help file ...
[ 90%] Generating AimsMeshCoordinatesToDecimated help file ...
[ 90%] Generating AimsExtractGyrus help file ...
[ 90%] Generating AimsMeshToMeshPoint help file ...
[ 90%] Generating AimsPlotCoordinatesOnMesh help file ...
[ 90%] Generating PlotFociForValidation help file ...
[ 90%] Generating AimsCoordinatesToIndex help file ...
[ 90%] Generating AimsGyriRegularization help file ...
[ 90%] Generating AimsGroupGyri help file ...
[ 90%] Generating AimsGeodesicPath help file ...
[ 90%] Generating AimsInterpolateVolumeToSurface help file ...
[ 90%] Generating AimsSulcalLines help file ...
[ 90%] Generating AimsTextureCompare help file ...
[ 90%] Generating AimsExactDepthArea help file ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,300::INFO::Found '0' pipeline(s) in 'deepsulci.sulci_labeling.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,300::INFO::Found '3' process(es) in 'deepsulci.sulci_labeling.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,300::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,302::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,303::INFO::Processing pipeline 'deepsulci.sulci_labeling.capsul.training.SulciDeepTraining'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,305::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,305::INFO::process: '3' files written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,305::INFO::Writing module 'sulci_labeling' index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:40,305::INFO::Index: an index has been written for module 'sulci_labeling' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:40,390::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:40,525::INFO::Pipeline 'morphologist.capsul.axon.normalization.Normalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.normalization.Normalization.png'.
[ 90%] Generating documentation commands help index ...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:40,625::INFO::Pipeline 'morphologist.capsul.spmnormalization.SPMNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.spmnormalization.SPMNormalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:40,717::INFO::Pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png'.
[100%] Built target bv_commands_doc
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:41,628::INFO::Pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:41,706::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLNormalization' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLNormalization.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:41,837::INFO::Pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:41,869::INFO::Pipeline 'morphologist.capsul.morphologist.Morphologist' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.morphologist.Morphologist.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:41,869::INFO::Summary: '14' files written for module 'capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:41,934::INFO::Pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline' representation has been written at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/schema/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.png'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:41,935::INFO::Summary: '14' files written for module 'capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:42,876::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:42,876::INFO::Found '40' process(es) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:42,876::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:42,910::INFO::Found '14' pipeline(s) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:42,910::INFO::Found '40' process(es) in 'morphologist.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:42,911::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:45,722::ERROR::Traceback (most recent call last):
File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:45,722::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:45,724::ERROR::Traceback (most recent call last):
File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:45,724::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_view.py::2025-06-26 06:14:45,916::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,460::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,468::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,476::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,484::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,540::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,550::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,558::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,569::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,601::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,621::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,668::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,682::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,689::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,704::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,713::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,728::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,735::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,740::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,749::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,751::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,763::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:47,773::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,593::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,609::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,623::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,623::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,623::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,625::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,626::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,626::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,628::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,629::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,630::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,631::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,631::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,632::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,632::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,633::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,634::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,635::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,640::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,641::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,642::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,643::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,644::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,645::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,645::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,646::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,647::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,648::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,649::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,650::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,651::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,651::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,652::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,652::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,653::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,654::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,656::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,656::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,657::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,659::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,660::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,661::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,661::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,665::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,666::INFO::pipeline: '14' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,666::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,667::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,667::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,668::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,669::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,669::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,669::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,670::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,670::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,670::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,670::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,671::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,672::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,673::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,674::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,674::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,675::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,676::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,677::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,678::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,684::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,685::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,685::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,686::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,687::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,688::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,689::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,690::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,691::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,692::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,693::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,694::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,695::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,696::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,697::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,698::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,699::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,702::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,704::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,713::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,715::INFO::Writing index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,715::INFO::process: '40' files written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,715::INFO::Writing module 'capsul' index at location '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:48,715::INFO::Index: an index has been written for module 'capsul' at location /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul.
WARNING: impossible to use version 2 of sip/Qt API.
generating CAPSUL processes docs...
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist', '--schema']
loading pickled environment... WARNING: impossible to use version 2 of sip/Qt API.
generating CAPSUL processes docs...
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist', '--schema']
loading pickled environment... done
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv'
done
loading intersphinx inventory from /casa/host/build/share/doc/soma-base-5.3/sphinx/objects.inv...
loading intersphinx inventory from /casa/host/build/share/doc/pyaims-5.2/sphinx/objects.inv...
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WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv'
loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv...
loading intersphinx inventory from doc/morphologist-ui-5.2/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'doc/morphologist-ui-5.2/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/doc/morphologist-ui-5.2/objects.inv'
[autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst
building [mo]: targets for 0 po files that are out of date
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building [html]: targets for 57 source files that are out of date
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[2Kreading sources... [ 2%] process_docs/morphologist/capsul/index
[autosummary] generating autosummary for: index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.axon.sulciskeleton.SulciSkeleton.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.t1biascorrection.T1BiasCorrection.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformation.TalairachTransformation.rst, process_docs/morphologist/capsul/process/morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, process_docs/morphologist/capsul/process/morphologist.capsul.import_t1_mri.ImportT1Mri.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_simple.MorphologistSimple.rst, process_docs/morphologist/capsul/process/morphologist.capsul.morphologist_viewer.MorphologistView.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, sulpated.rst
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/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
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[2Kreading sources... [ 98%] process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel
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/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline.rst:66: WARNING: duplicate label morphologist.capsul.axon.fslnormalizationpipeline.fslnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:30: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_inputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline.rst:70: WARNING: duplicate label morphologist.capsul.axon.spmnormalizationpipeline.spmnormalizationpipeline_outputs, other instance in /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.rst
looking for now-outdated files... none found
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checking consistency... done
preparing documents... done
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copying extra files... done
done
[2Kwriting output... [ 2%] index
done
checking consistency... /casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:10: WARNING: Citation [FISCHER2012] is not referenced.
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:118: WARNING: Citation [PERROT2009] is not referenced.
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:120: WARNING: Citation [PERROT2011] is not referenced.
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:129: WARNING: Citation [TUCHOLKA2008] is not referenced.
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:134: WARNING: Citation [KELLER2009] is not referenced.
/casa/host/src/morphologist/morphologist-gpl/master/sphinx/user_doc/index.rst:139: WARNING: Citation [VAROQUAUX2010] is not referenced.
done
preparing documents... done
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copying extra files... done
done
[2Kwriting output... [ 2%] index
[2Kwriting output... [ 3%] process_docs/morphologist/capsul/index
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[2Kwriting output... [ 5%] process_docs/morphologist/capsul/pipeline/index
[2Kwriting output... [ 9%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline
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[2Kwriting output... [ 12%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline
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[2Kwriting output... [ 26%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.morphologist.Morphologist
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/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,475::ERROR::Traceback (most recent call last):
File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
[2Kwriting output... [ 21%] /casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,476::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,477::ERROR::Traceback (most recent call last):
File "/casa/host/src/capsul/master/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/casa/host/build/python/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/casa/host/build/python/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,477::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
[2Kwriting output... [ 22%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLNormalization
[2Kwriting output... [ 28%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMNormalization
[2Kwriting output... [ 24%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline
[2Kwriting output... [ 29%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline
[2Kwriting output... [ 26%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.morphologist.Morphologist
[2Kwriting output... [ 31%] process_docs/morphologist/capsul/process/index
[2Kwriting output... [ 33%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.acpcorientation.AcpcOrientation
[2Kwriting output... [ 34%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.aimsconverter.AimsConverter
[2Kwriting output... [ 36%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims
[2Kwriting output... [ 38%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainsegmentation.BrainSegmentation
[2Kwriting output... [ 40%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainvolumes.brainvolumes
[2Kwriting output... [ 41%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims
[2Kwriting output... [ 43%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi
[2Kwriting output... [ 28%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMNormalization
[2Kwriting output... [ 45%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh
[2Kwriting output... [ 29%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline
[2Kwriting output... [ 47%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology
[2Kwriting output... [ 48%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.histoanalysis.HistoAnalysis
[2Kwriting output... [ 31%] process_docs/morphologist/capsul/process/index
[2Kwriting output... [ 50%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.importt1mri.ImportT1MRI
[2Kwriting output... [ 33%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.acpcorientation.AcpcOrientation
[2Kwriting output... [ 52%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.morpho_report.morpho_report
[2Kwriting output... [ 34%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.aimsconverter.AimsConverter
[2Kwriting output... [ 53%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.morphologistprocess.morphologistProcess
[2Kwriting output... [ 36%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims
[2Kwriting output... [ 38%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainsegmentation.BrainSegmentation
[2Kwriting output... [ 40%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainvolumes.brainvolumes
[2Kwriting output... [ 55%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister
[2Kwriting output... [ 41%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims
[2Kwriting output... [ 57%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_baladin.Normalization_Baladin
[2Kwriting output... [ 43%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi
[2Kwriting output... [ 59%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit
[2Kwriting output... [ 45%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh
[2Kwriting output... [ 60%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit
[2Kwriting output... [ 47%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology
[2Kwriting output... [ 62%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit
[2Kwriting output... [ 48%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.histoanalysis.HistoAnalysis
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,686::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,686::INFO::Found '4' process(es) in 'deepsulci.pattern_classification.capsul'.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,686::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,687::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,688::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,689::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining'...
[2Kwriting output... [ 64%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,690::INFO::Writing index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,690::INFO::process: '4' files written for module 'pattern_classification' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process.
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,690::INFO::Writing module 'pattern_classification' index at location '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst'...
/casa/host/src/capsul/master/capsul/sphinxext/capsul_pipeline_rst.py::2025-06-26 06:14:52,691::INFO::Index: an index has been written for module 'pattern_classification' at location /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification.
[2Kwriting output... [ 50%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.importt1mri.ImportT1MRI
[2Kwriting output... [ 66%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.pialmesh.PialMesh
[2Kwriting output... [ 52%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.morpho_report.morpho_report
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done
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done
build succeeded, 9 warnings.
The HTML pages are in ../../share/doc/morphologist-5.2/dev_doc.
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build succeeded, 16 warnings.
The HTML pages are in ../../share/doc/morphologist-5.2/user_doc.
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WARNING: html_static_path entry '_static' does not exist
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generating CAPSUL processes docs...
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.sulci_labeling.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci', '--schema']
['/usr/bin/python3', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.pattern_classification.capsul', '-o', '/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci', '--schema']
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WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv' not fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or directory: '/casa/host/build/share/doc/pyanatomist-5.2/sphinx/objects.inv'
loading intersphinx inventory from /casa/host/build/share/doc/soma-workflow-3.3/sphinx/objects.inv...
[autosummary] generating autosummary for: api.rst, index.rst, process_docs/deepsulci/pattern_classification/index.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.svm_labeling.PatternSVMLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.svm_training.PatternSVMTraining.rst, process_docs/deepsulci/pattern_classification/process/index.rst, process_docs/deepsulci/sulci_labeling/index.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst, process_docs/deepsulci/sulci_labeling/process/index.rst
/usr/lib/python3/dist-packages/nbsphinx.py:1505: RuntimeWarning: You are using an unsupported version of pandoc (3.1.3).
Your version must be at least (1.12.1) but less than (3.0.0).
Refer to https://pandoc.org/installing.html.
Continuing with doubts...
nbconvert.utils.pandoc.check_pandoc_version()
WARNING: Failed to import deepsulci.pattern_classification.method.svm.
Possible hints:
* AttributeError: module 'deepsulci.pattern_classification.method' has no attribute 'svm'
* ModuleNotFoundError: No module named 'pcl'
pcl.registration missing !
building [mo]: targets for 0 po files that are out of date
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updating environment: 0 added, 12 changed, 0 removed
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pcl.registration missing !
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WARNING: autodoc: failed to import module 'svm' from module 'deepsulci.pattern_classification.method'; the following exception was raised:
No module named 'pcl'
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] No such file or directory: '../../../src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/pipeline/index.rst'.
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst:21: WARNING: duplicate label pipelines, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst:26: WARNING: duplicate label buildingblocks, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:11: WARNING: duplicate label deepsulci.pattern_classification.capsul.resnet_labeling.patterndeeplabeling, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:32: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:47: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:11: WARNING: duplicate label deepsulci.pattern_classification.capsul.resnet_training.patterndeeptraining, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:56: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:84: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:11: WARNING: duplicate label deepsulci.pattern_classification.capsul.snipe_labeling.patternsnipelabeling, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:33: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:53: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:11: WARNING: duplicate label deepsulci.pattern_classification.capsul.snipe_training.patternsnipetraining, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:50: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:74: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] No such file or directory: '../../../src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/pipeline/index.rst'.
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:21: WARNING: duplicate label pipelines, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/index.rst
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/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:11: WARNING: duplicate label deepsulci.sulci_labeling.capsul.error_computation.errorcomputation, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:38: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:55: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst:11: WARNING: duplicate label deepsulci.sulci_labeling.capsul.labeling.sulcideeplabeling, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst:36: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst:69: WARNING: duplicate label outputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst:11: WARNING: duplicate label deepsulci.sulci_labeling.capsul.training.sulcideeptraining, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst
/casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst:60: WARNING: duplicate label inputs, other instance in /casa/host/src/morphologist/morpho-deepsulci/master/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst
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bv_maker summary:
OK step doc: /casa/host/build, started: 2025/06/26 06:13, stopped: 2025/06/26 06:15
All went good.
Finished: SUCCESS
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