Index

_

__call__() (capsul.process.process.FileCopyProcess method) __init__() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) _copy_input_files() (capsul.process.process.FileCopyProcess method) _get_process_arguments() (capsul.process.process.FileCopyProcess method) _links (capsul.pipeline.topological_sort.Graph attribute) _nipype_class (capsul.process.process.NipypeProcess attribute)

_nipype_interface (capsul.process.process.NipypeProcess attribute) _nipype_interface_name (capsul.process.process.NipypeProcess attribute) _nipype_module (capsul.process.process.NipypeProcess attribute) _nodes (capsul.pipeline.topological_sort.Graph attribute) _outputs (capsul.pipeline.pipeline_nodes.Switch attribute) _switch_values (capsul.pipeline.pipeline_nodes.Switch attribute) _update_input_traits() (capsul.process.process.FileCopyProcess method)

A

activate_configuration() (in module capsul.engine) activate_configurations() (in module capsul.engine.module.fsl) (in module capsul.engine.module.python) (in module capsul.engine.module.spm) activate_module() (in module capsul.engine) activated (capsul.pipeline.pipeline_nodes.Node attribute) (capsul.pipeline.pipeline_nodes.Plug attribute) ActivationInspector (class in capsul.qt_gui.widgets.activation_inspector) ActivationInspectorApp (class in capsul.qt_gui.widgets.activation_inspector) add_controls_to_ui() (capsul.qt_apps.main_window.CapsulMainWindow method) (capsul.qt_gui.widgets.activation_inspector.ActivationInspector method) add_custom_node() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) add_embedded_subpipeline() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] add_iterative_process() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) add_link() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) (capsul.pipeline.topological_sort.Graph method), [1] add_link_from() (capsul.pipeline.topological_sort.GraphNode method), [1] add_link_to() (capsul.pipeline.topological_sort.GraphNode method), [1] add_node() (capsul.pipeline.topological_sort.Graph method), [1] (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) add_optional_output_switch() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) add_pipeline_step() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) add_process() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method)

add_processes_selection() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) add_subpipeline_link() (capsul.pipeline.pipeline_construction.PipelineConstructor method) add_switch() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) add_trait() (capsul.pipeline.pipeline.Pipeline method) (capsul.process.process.Process method) (capsul.study_config.study_config.StudyConfig method) add_tree_nodes() (in module capsul.qt_apps.utils.fill_treectrl) all_nodes() (capsul.pipeline.pipeline.Pipeline method) allowed_extensions() (capsul.attributes.completion_engine.PathCompletionEngine method) (capsul.attributes.fom_completion_engine.FomPathCompletionEngine method) allowed_formats() (capsul.attributes.completion_engine.PathCompletionEngine method) (capsul.attributes.fom_completion_engine.FomPathCompletionEngine method) Application (class in capsul.qt_apps.utils.application) AttributedProcessWidget (class in capsul.qt_gui.widgets.attributed_process_widget) attributes_changed() (capsul.attributes.completion_engine.ProcessCompletionEngine method) attributes_to_path() (capsul.attributes.completion_engine.PathCompletionEngine method) (capsul.attributes.completion_engine.ProcessCompletionEngine method), [1] (capsul.attributes.fom_completion_engine.FomPathCompletionEngine method) AttributesConfig (class in capsul.study_config.config_modules.attributes_config) AttributesFactory (class in capsul.attributes.attributes_factory) AttributesSchema (class in capsul.attributes.attributes_schema) auto_configuration() (in module capsul.subprocess.fsl) (in module capsul.subprocess.spm) auto_dot_node_positions() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] autoexport_nodes_parameters() (capsul.pipeline.pipeline.Pipeline method)

B

BoardWidget (class in capsul.qt_gui.board_widget) boundingRect() (capsul.qt_gui.widgets.pipeline_developer_view.NodeGWidget method) boxItem (class in capsul.qt_gui.widgets.pipeline_developer_view)

BrainVISAConfig (class in capsul.study_config.config_modules.brainvisa_config) browse_node() (capsul.qt_gui.board_widget.BoardWidget method) BuiltinProcessCompletionEngineFactory (class in capsul.attributes.completion_engine_factory)

C

cache() (capsul.study_config.memory.Memory method), [1] call() (in module capsul.subprocess.fsl) (in module capsul.subprocess.spm) call_process_method() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) capsul.api module capsul.attributes module capsul.attributes.attributes_factory module capsul.attributes.attributes_schema module capsul.attributes.completion_engine module capsul.attributes.completion_engine_factory module capsul.attributes.completion_engine_iteration module capsul.attributes.fom_completion_engine module capsul.engine module capsul.engine.database module capsul.engine.database_json module capsul.engine.database_populse module capsul.engine.module module capsul.engine.module.attributes module capsul.engine.module.axon module capsul.engine.module.fom module capsul.engine.module.fsl module capsul.engine.module.matlab module capsul.engine.module.python module capsul.engine.module.spm module capsul.engine.run module capsul.engine.settings module capsul.in_context module capsul.in_context.fsl module capsul.in_context.spm module capsul.info module capsul.pipeline module capsul.pipeline.custom_nodes module capsul.pipeline.custom_nodes.cv_node module capsul.pipeline.custom_nodes.loo_node module capsul.pipeline.custom_nodes.map_node module capsul.pipeline.custom_nodes.reduce_node module capsul.pipeline.custom_nodes.strcat_node module capsul.pipeline.custom_nodes.strconv module capsul.pipeline.pipeline module capsul.pipeline.pipeline_construction module capsul.pipeline.pipeline_nodes module capsul.pipeline.pipeline_tools module capsul.pipeline.pipeline_workflow module capsul.pipeline.process_iteration module capsul.pipeline.python_export module capsul.pipeline.topological_sort module capsul.pipeline.xml module capsul.plugins module capsul.process module capsul.process.nipype_process module capsul.process.process module capsul.process.runprocess module capsul.process.xml module capsul.qt_apps module capsul.qt_apps.main_window module capsul.qt_apps.pipeline_viewer_app module capsul.qt_apps.utils module capsul.qt_apps.utils.application module capsul.qt_apps.utils.fill_treectrl module capsul.qt_apps.utils.find_pipelines module capsul.qt_apps.utils.window module capsul.qt_gui module capsul.qt_gui.board_widget module capsul.qt_gui.widgets module capsul.qt_gui.widgets.activation_inspector module capsul.qt_gui.widgets.attributed_process_widget module

capsul.qt_gui.widgets.links_debugger module capsul.qt_gui.widgets.pipeline_developer_view module capsul.qt_gui.widgets.pipeline_file_warning_widget module capsul.qt_gui.widgets.pipeline_user_view module capsul.qt_gui.widgets.viewer_widget module capsul.sphinxext module capsul.sphinxext.layoutdocgen module capsul.sphinxext.load_pilots module capsul.sphinxext.pipelinedocgen module capsul.sphinxext.usecasesdocgen module capsul.study_config module capsul.study_config.config_modules module capsul.study_config.config_modules.attributes_config module capsul.study_config.config_modules.brainvisa_config module capsul.study_config.config_modules.fom_config module capsul.study_config.config_modules.freesurfer_config module capsul.study_config.config_modules.fsl_config module capsul.study_config.config_modules.matlab_config module capsul.study_config.config_modules.nipype_config module capsul.study_config.config_modules.smartcaching_config module capsul.study_config.config_modules.somaworkflow_config module capsul.study_config.config_modules.spm_config module capsul.study_config.config_utils module capsul.study_config.memory module capsul.study_config.process_instance module capsul.study_config.run module capsul.study_config.study_config module capsul.subprocess module capsul.subprocess.fsl module capsul.subprocess.spm module capsul.utils module capsul.utils.finder module capsul.utils.version_utils module capsul_engine() (in module capsul.engine) CapsulEngine (class in capsul.engine) CapsulLinkDebuggerView (class in capsul.qt_gui.widgets.links_debugger) CapsulMainWindow (class in capsul.qt_apps.main_window) CapsulResultDecoder (class in capsul.study_config.memory) CapsulResultEncoder (class in capsul.study_config.memory) change_iterative_plug() (capsul.pipeline.process_iteration.ProcessIteration method) check_call() (in module capsul.subprocess.fsl) (in module capsul.subprocess.spm) check_configuration_values() (in module capsul.subprocess.fsl) (in module capsul.subprocess.spm) check_configurations() (in module capsul.engine.module.axon) (in module capsul.engine.module.fsl) (in module capsul.engine.module.matlab) check_files() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) check_fsl_configuration() (in module capsul.subprocess.fsl) check_notably_invalid_config() (in module capsul.engine.module.axon) (in module capsul.engine.module.fsl) (in module capsul.engine.module.matlab) (in module capsul.engine.module.python) (in module capsul.engine.module.spm) check_output() (in module capsul.subprocess.fsl) (in module capsul.subprocess.spm) check_path() (capsul.engine.database.DatabaseEngine method) check_requirements() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_nodes.Node method) (capsul.pipeline.pipeline_nodes.ProcessNode method) (capsul.process.process.Process method) check_spm_configuration() (in module capsul.subprocess.spm) cleanup() (capsul.pipeline.pipeline_nodes.Node method) clear() (capsul.study_config.memory.Memory method), [1] collection_name() (capsul.engine.settings.SettingsSession static method) colored_parameters (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] compare_to_state() (capsul.pipeline.pipeline.Pipeline method) complement_doc() (capsul.process.process.ProcessMeta static method) complete_configurations() (in module capsul.engine.module.axon) (in module capsul.engine.module.fsl) complete_iteration_step() (capsul.attributes.completion_engine_iteration.ProcessCompletionEngineIteration method) complete_parameters() (capsul.attributes.completion_engine.ProcessCompletionEngine method), [1] (capsul.attributes.completion_engine_iteration.ProcessCompletionEngineIteration method) config() (capsul.engine.settings.SettingsSession method) configs() (capsul.engine.settings.SettingsSession method) connect() (capsul.engine.CapsulEngine method) (capsul.pipeline.pipeline_nodes.Node method), [1] connect_resource() (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig method), [1] connected_to() (capsul.engine.CapsulEngine method) connections() (capsul.pipeline.pipeline_nodes.Switch method) ConstructedPipeline (class in capsul.pipeline.pipeline_construction) copied_files (capsul.process.process.FileCopyProcess attribute) copied_inputs (capsul.process.process.FileCopyProcess attribute) copy() (capsul.attributes.attributes_schema.ProcessAttributes method) copy_to_single() (capsul.attributes.attributes_schema.ProcessAttributes method) count_items() (capsul.pipeline.pipeline.Pipeline method) create_attributes_with_fom() (capsul.attributes.fom_completion_engine.FomProcessCompletionEngine method), [1] create_board_tree() (capsul.qt_gui.board_widget.BoardWidget method) create_output_directories (capsul.study_config.study_config.StudyConfig attribute) create_output_directories() (in module capsul.pipeline.pipeline_tools) create_output_widget() (capsul.qt_gui.board_widget.BoardWidget method) create_viewer_tree() (capsul.qt_gui.board_widget.BoardWidget method) create_xml_pipeline() (in module capsul.pipeline.xml) create_xml_process() (in module capsul.process.xml) CrossValidationFoldNode (class in capsul.pipeline.custom_nodes.cv_node)

D

database_factory() (in module capsul.engine) DatabaseEngine (class in capsul.engine.database) default() (capsul.study_config.memory.CapsulResultEncoder method) default_study_config() (in module capsul.study_config.study_config) define_groups_as_steps() (capsul.pipeline.pipeline.Pipeline method) define_pipeline_steps() (capsul.pipeline.pipeline.Pipeline method) detailed_information() (capsul.engine.CapsulEngine method) (in module capsul.engine.run) disable_done_steps() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) disable_following_steps() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) disable_preceding_steps() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) disable_runtime_steps_with_existing_outputs() (in module capsul.pipeline.pipeline_tools)

disabled_pipeline_steps_nodes() (capsul.pipeline.pipeline.Pipeline method) disconnect() (capsul.engine.CapsulEngine method) (capsul.pipeline.pipeline_nodes.Node method) disconnect_resource() (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig method), [1] dispose() (capsul.engine.CapsulEngine method) (in module capsul.engine.run) dot_graph_from_pipeline() (in module capsul.pipeline.pipeline_tools) dot_graph_from_workflow() (in module capsul.pipeline.pipeline_tools) dragEnterEvent() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) dragMoveEvent() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) drop_process() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) dropEvent() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) dump_pipeline_state_as_dict() (in module capsul.pipeline.pipeline_tools)

E

edit_sub_pipeline (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute) EditableAttributes (class in capsul.attributes.attributes_schema) edition_enabled() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) edition_widget() (in module capsul.engine.module.attributes) (in module capsul.engine.module.axon) (in module capsul.engine.module.fom) (in module capsul.engine.module.fsl) (in module capsul.engine.module.matlab) (in module capsul.engine.module.python) (in module capsul.engine.module.spm) EmbeddedSubPipelineItem (class in capsul.qt_gui.widgets.pipeline_developer_view) EmittingStream (class in capsul.qt_apps.utils.application) enable_all_pipeline_steps() (capsul.pipeline.pipeline.Pipeline method)

enable_all_steps() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) enable_following_steps() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) enable_preceding_steps() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) enable_step() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) enabled (capsul.pipeline.pipeline_nodes.Node attribute) (capsul.pipeline.pipeline_nodes.Plug attribute) enableNode() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) ensure_module_fields() (capsul.engine.settings.SettingsSession method) ensure_pipeline() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) environment() (in module capsul.study_config.config_utils) executions() (capsul.engine.CapsulEngine method) export_parameter() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.PipelineConstructor method) export_to_db_scans (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute)

F

file_fingerprint() (in module capsul.study_config.memory) FileCopyProcess (class in capsul.process.process) fill_treectrl() (in module capsul.qt_apps.utils.fill_treectrl) find_empty_parameters() (capsul.pipeline.pipeline.Pipeline method) find_next() (capsul.qt_gui.widgets.activation_inspector.ActivationInspector method) find_node() (capsul.pipeline.topological_sort.Graph method), [1] (in module capsul.pipeline.pipeline_tools) find_pipeline_and_process() (in module capsul.qt_apps.utils.find_pipelines) find_pipelines_from_description() (in module capsul.qt_apps.utils.find_pipelines) find_plug_connection_destinations() (in module capsul.pipeline.pipeline_tools) find_plug_connection_sources() (in module capsul.pipeline.pipeline_tools) find_previous() (capsul.qt_gui.widgets.activation_inspector.ActivationInspector method) find_processes() (in module capsul.utils.finder) find_spm() (in module capsul.subprocess.spm) focusInEvent() (capsul.qt_gui.widgets.pipeline_developer_view.boxItem method) (capsul.qt_gui.widgets.pipeline_developer_view.Link method)

focusOutEvent() (capsul.qt_gui.widgets.pipeline_developer_view.boxItem method) (capsul.qt_gui.widgets.pipeline_developer_view.Link method) FomConfig (class in capsul.study_config.config_modules.fom_config) FomPathCompletionEngine (class in capsul.attributes.fom_completion_engine) FomProcessCompletionEngine (class in capsul.attributes.fom_completion_engine) FomProcessCompletionEngineIteration (class in capsul.attributes.fom_completion_engine) FreeSurferConfig (class in capsul.study_config.config_modules.freesurfer_config) fsl_call() (in module capsul.in_context.fsl) fsl_check_call() (in module capsul.in_context.fsl) fsl_check_output() (in module capsul.in_context.fsl) fsl_command_with_environment() (in module capsul.in_context.fsl) (in module capsul.subprocess.fsl) fsl_env() (in module capsul.in_context.fsl) FSLConfig (class in capsul.study_config.config_modules.fsl_config) FslPopen (class in capsul.in_context.fsl) full_name (capsul.pipeline.pipeline_nodes.Node attribute)

G

generate_api_doc() (capsul.sphinxext.pipelinedocgen.PipelineHelpWriter method) generate_index_entry() (capsul.sphinxext.layoutdocgen.LayoutHelperWriter method) generate_logging (capsul.study_config.study_config.StudyConfig attribute) generate_usecases_doc() (capsul.sphinxext.usecasesdocgen.UseCasesHelperWriter method) get_all_environments() (capsul.engine.settings.Settings method) (capsul.engine.settings.SettingsSession method) get_attribute_values() (capsul.attributes.completion_engine.ProcessCompletionEngine method), [1] (capsul.attributes.completion_engine.SwitchCompletionEngine method) (capsul.attributes.completion_engine_iteration.ProcessCompletionEngineIteration method) (capsul.attributes.fom_completion_engine.FomProcessCompletionEngine method) get_commandline() (capsul.process.process.Process method) get_completion_engine() (capsul.attributes.completion_engine.ProcessCompletionEngine method) (capsul.attributes.completion_engine.ProcessCompletionEngine static method) (capsul.attributes.completion_engine.ProcessCompletionEngineFactory method) (capsul.attributes.completion_engine_factory.BuiltinProcessCompletionEngineFactory method) get_configuration_dict() (capsul.study_config.study_config.StudyConfig method) get_connections_through() (capsul.pipeline.custom_nodes.strconv.StrConvNode method) (capsul.pipeline.pipeline_nodes.Node method) (capsul.pipeline.pipeline_nodes.PipelineNode method) (capsul.pipeline.pipeline_nodes.Switch method) get_help() (capsul.process.process.Process method) get_induced_iterative_parameters() (capsul.attributes.completion_engine_iteration.ProcessCompletionEngineIteration method) get_input_help() (capsul.process.process.Process method) get_input_spec() (capsul.process.process.Process method) get_inputs() (capsul.process.process.Process method) get_iterated_attributes() (capsul.attributes.completion_engine_iteration.ProcessCompletionEngineIteration method) (capsul.attributes.fom_completion_engine.FomProcessCompletionEngineIteration method) get_iteration_pipeline() (capsul.engine.CapsulEngine method) (capsul.study_config.study_config.StudyConfig method) get_log() (capsul.process.process.Process method) get_missing_mandatory_parameters() (capsul.pipeline.pipeline_nodes.Node method) (capsul.process.process.Process method) get_nipype_interfaces_versions() (in module capsul.utils.version_utils) get_node_class() (in module capsul.study_config.process_instance)

get_node_instance() (in module capsul.study_config.process_instance) get_output_directories() (in module capsul.pipeline.pipeline_tools) get_output_help() (capsul.process.process.Process method) get_output_spec() (capsul.process.process.Process method) get_outputs() (capsul.process.process.Process method) get_parameter() (capsul.process.process.Process method) get_parameters_attributes() (capsul.attributes.attributes_schema.ProcessAttributes method) get_path_completion_engine() (capsul.attributes.completion_engine.ProcessCompletionEngine method), [1] (capsul.attributes.fom_completion_engine.FomProcessCompletionEngine method) get_pipeline_step_nodes() (capsul.pipeline.pipeline.Pipeline method) get_plug_value() (capsul.pipeline.pipeline_nodes.Node method), [1] (capsul.pipeline.pipeline_nodes.ProcessNode method), [1] get_process_instance() (capsul.engine.CapsulEngine method) (capsul.study_config.study_config.StudyConfig method) (in module capsul.study_config.process_instance) get_process_signature() (in module capsul.study_config.memory) get_process_with_params() (in module capsul.process.runprocess) get_processes_selection_groups() (capsul.pipeline.pipeline.Pipeline method) get_processes_selection_nodes() (capsul.pipeline.pipeline.Pipeline method) get_processes_selections() (capsul.pipeline.pipeline.Pipeline method) get_resource_id() (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig method), [1] get_short_name() (capsul.sphinxext.pipelinedocgen.PipelineHelpWriter method) get_study_config() (capsul.pipeline.pipeline_nodes.Node method) (capsul.pipeline.pipeline_nodes.ProcessNode method) (capsul.process.process.Process method) get_tool_version() (in module capsul.utils.version_utils) get_trait() (capsul.pipeline.pipeline_nodes.Node method), [1] (capsul.pipeline.pipeline_nodes.ProcessNode method), [1] (capsul.study_config.study_config.StudyConfig method), [1] get_trait_value() (capsul.study_config.study_config.StudyConfig method), [1] get_workflow_controller() (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig method), [1] getsource() (capsul.sphinxext.usecasesdocgen.UseCasesHelperWriter method) Graph (class in capsul.pipeline.topological_sort) GraphNode (class in capsul.pipeline.topological_sort)

H

HandleItem (class in capsul.qt_gui.widgets.pipeline_developer_view) has_attribute() (in module capsul.study_config.memory) has_default_value (capsul.pipeline.pipeline_nodes.Plug attribute)

help() (capsul.process.process.NipypeProcess class method) (capsul.process.process.Process class method) helpEvent() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineScene method)

I

id (capsul.process.process.Process attribute) import_configs() (capsul.engine.CapsulEngine method) (capsul.engine.settings.Settings method) init_window() (capsul.qt_apps.pipeline_viewer_app.PipelineViewerApp method) (capsul.qt_gui.widgets.activation_inspector.ActivationInspectorApp method) initialize_callbacks() (capsul.study_config.config_modules.attributes_config.AttributesConfig method) (capsul.study_config.config_modules.brainvisa_config.BrainVISAConfig method) (capsul.study_config.config_modules.fom_config.FomConfig method) (capsul.study_config.config_modules.freesurfer_config.FreeSurferConfig method) (capsul.study_config.config_modules.fsl_config.FSLConfig method) (capsul.study_config.config_modules.matlab_config.MatlabConfig method) (capsul.study_config.config_modules.nipype_config.NipypeConfig method) (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig method) (capsul.study_config.config_modules.spm_config.SPMConfig method) (capsul.study_config.study_config.StudyConfigModule method) initialize_module() (capsul.study_config.config_modules.attributes_config.AttributesConfig method) (capsul.study_config.config_modules.brainvisa_config.BrainVISAConfig method) (capsul.study_config.config_modules.fom_config.FomConfig method) (capsul.study_config.config_modules.freesurfer_config.FreeSurferConfig method) (capsul.study_config.config_modules.fsl_config.FSLConfig method) (capsul.study_config.config_modules.matlab_config.MatlabConfig method) (capsul.study_config.config_modules.nipype_config.NipypeConfig method) (capsul.study_config.config_modules.spm_config.SPMConfig method) (capsul.study_config.study_config.StudyConfigModule method)

initialize_modules() (capsul.study_config.study_config.StudyConfig method) input_directory (capsul.study_config.study_config.StudyConfig attribute) install_auto_completion() (capsul.attributes.completion_engine.ProcessCompletionEngine method), [1] install_links_debug_handler() (capsul.pipeline.pipeline.Pipeline method) install_switch_observer() (capsul.attributes.completion_engine.SwitchCompletionEngine method) InteractiveProcess (class in capsul.process.process) interrupt() (capsul.engine.CapsulEngine method) (in module capsul.engine.run) is_job() (capsul.pipeline.custom_nodes.strconv.StrConvNode method) (capsul.pipeline.pipeline_nodes.Node method) (capsul.pipeline.pipeline_nodes.ProcessNode method) (capsul.pipeline.pipeline_nodes.Switch method) is_logical_view() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] is_node_enabled() (in module capsul.pipeline.pipeline_tools) is_parameter_protected() (capsul.pipeline.pipeline_nodes.ProcessNode method) is_pipeline_node() (in module capsul.study_config.process_instance) is_process() (in module capsul.study_config.process_instance) is_restricted_edition_mode() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) itemChange() (capsul.qt_gui.widgets.pipeline_developer_view.HandleItem method)

J

json_value() (capsul.engine.database.DatabaseEngine method) (capsul.engine.database_json.JSONDBEngine method) (capsul.engine.database_populse.PopulseDBEngine method)

JSONDBEngine (class in capsul.engine.database_json)

K

keyPressEvent() (capsul.qt_gui.widgets.pipeline_developer_view.boxItem method) (capsul.qt_gui.widgets.pipeline_developer_view.Link method) (capsul.qt_gui.widgets.pipeline_developer_view.NodeGWidget method) (capsul.qt_gui.widgets.pipeline_developer_view.PipelineScene method)

L

LayoutHelperWriter (class in capsul.sphinxext.layoutdocgen) LeaveOneOutNode (class in capsul.pipeline.custom_nodes.loo_node) Link (class in capsul.qt_gui.widgets.pipeline_developer_view) link_right_clicked (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] link_tooltip_text() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineScene method) links_from (capsul.pipeline.pipeline_nodes.Plug attribute) (capsul.pipeline.topological_sort.GraphNode attribute) links_from_degree (capsul.pipeline.topological_sort.GraphNode attribute) links_to (capsul.pipeline.pipeline_nodes.Plug attribute) (capsul.pipeline.topological_sort.GraphNode attribute)

links_to_degree (capsul.pipeline.topological_sort.GraphNode attribute) lists2dict() (in module capsul.qt_apps.utils.find_pipelines) load_module() (capsul.engine.CapsulEngine method) (capsul.study_config.study_config.StudyConfig method) load_modules() (capsul.engine.CapsulEngine method) load_pilots() (in module capsul.sphinxext.load_pilots) load_pipeline_parameters() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) (in module capsul.pipeline.pipeline_tools) log_file (capsul.process.process.Process attribute)

M

main() (in module capsul.process.runprocess) make_commandline_argument() (capsul.process.process.Process method) MapNode (class in capsul.pipeline.custom_nodes.map_node) MatlabConfig (class in capsul.study_config.config_modules.matlab_config) MemorizedProcess (class in capsul.study_config.memory) Memory (class in capsul.study_config.memory) meta (capsul.pipeline.topological_sort.GraphNode attribute) module capsul.api capsul.attributes capsul.attributes.attributes_factory capsul.attributes.attributes_schema capsul.attributes.completion_engine capsul.attributes.completion_engine_factory capsul.attributes.completion_engine_iteration capsul.attributes.fom_completion_engine capsul.engine capsul.engine.database capsul.engine.database_json capsul.engine.database_populse capsul.engine.module capsul.engine.module.attributes capsul.engine.module.axon capsul.engine.module.fom capsul.engine.module.fsl capsul.engine.module.matlab capsul.engine.module.python capsul.engine.module.spm capsul.engine.run capsul.engine.settings capsul.in_context capsul.in_context.fsl capsul.in_context.spm capsul.info capsul.pipeline capsul.pipeline.custom_nodes capsul.pipeline.custom_nodes.cv_node capsul.pipeline.custom_nodes.loo_node capsul.pipeline.custom_nodes.map_node capsul.pipeline.custom_nodes.reduce_node capsul.pipeline.custom_nodes.strcat_node capsul.pipeline.custom_nodes.strconv capsul.pipeline.pipeline capsul.pipeline.pipeline_construction capsul.pipeline.pipeline_nodes capsul.pipeline.pipeline_tools capsul.pipeline.pipeline_workflow capsul.pipeline.process_iteration capsul.pipeline.python_export capsul.pipeline.topological_sort capsul.pipeline.xml capsul.plugins capsul.process capsul.process.nipype_process capsul.process.process capsul.process.runprocess capsul.process.xml capsul.qt_apps capsul.qt_apps.main_window capsul.qt_apps.pipeline_viewer_app capsul.qt_apps.utils capsul.qt_apps.utils.application capsul.qt_apps.utils.fill_treectrl capsul.qt_apps.utils.find_pipelines capsul.qt_apps.utils.window capsul.qt_gui capsul.qt_gui.board_widget capsul.qt_gui.widgets capsul.qt_gui.widgets.activation_inspector capsul.qt_gui.widgets.attributed_process_widget capsul.qt_gui.widgets.links_debugger capsul.qt_gui.widgets.pipeline_developer_view capsul.qt_gui.widgets.pipeline_file_warning_widget capsul.qt_gui.widgets.pipeline_user_view capsul.qt_gui.widgets.viewer_widget capsul.sphinxext capsul.sphinxext.layoutdocgen capsul.sphinxext.load_pilots capsul.sphinxext.pipelinedocgen capsul.sphinxext.usecasesdocgen capsul.study_config capsul.study_config.config_modules capsul.study_config.config_modules.attributes_config capsul.study_config.config_modules.brainvisa_config capsul.study_config.config_modules.fom_config capsul.study_config.config_modules.freesurfer_config capsul.study_config.config_modules.fsl_config capsul.study_config.config_modules.matlab_config capsul.study_config.config_modules.nipype_config capsul.study_config.config_modules.smartcaching_config capsul.study_config.config_modules.somaworkflow_config capsul.study_config.config_modules.spm_config capsul.study_config.config_utils capsul.study_config.memory capsul.study_config.process_instance capsul.study_config.run capsul.study_config.study_config capsul.subprocess capsul.subprocess.fsl capsul.subprocess.spm capsul.utils capsul.utils.finder capsul.utils.version_utils

module_name() (capsul.engine.settings.Settings static method) mouseDoubleClickEvent() (capsul.qt_gui.widgets.pipeline_developer_view.NodeGWidget method) mouseMoveEvent() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) mousePressEvent() (capsul.qt_gui.widgets.pipeline_developer_view.Link method) (capsul.qt_gui.widgets.pipeline_developer_view.NodeGWidget method) (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) (capsul.qt_gui.widgets.pipeline_developer_view.Plug method) mouseReleaseEvent() (capsul.qt_gui.widgets.pipeline_developer_view.HandleItem method) (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) MyQUiLoader (class in capsul.qt_apps.utils.window)

N

name (capsul.pipeline.pipeline_nodes.Node attribute) (capsul.pipeline.topological_sort.GraphNode attribute) (capsul.process.process.Process attribute) (capsul.study_config.study_config.StudyConfigModule property) named_directories() (capsul.engine.database.DatabaseEngine method) (capsul.engine.database_json.JSONDBEngine method) (capsul.engine.database_populse.PopulseDBEngine method) named_directory() (capsul.engine.database.DatabaseEngine method) (capsul.engine.database_json.JSONDBEngine method) (capsul.engine.database_populse.PopulseDBEngine method) new_config() (capsul.engine.settings.SettingsSession method)

nipype_factory() (in module capsul.process.nipype_process) NipypeConfig (class in capsul.study_config.config_modules.nipype_config) NipypeProcess (class in capsul.process.process) Node (class in capsul.pipeline.pipeline_nodes) node_clicked (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] node_clicked_ctrl (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] node_right_clicked (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] NodeGWidget (class in capsul.qt_gui.widgets.pipeline_developer_view) nodes (capsul.pipeline.pipeline.Pipeline attribute) nodes_selection_changed() (capsul.attributes.completion_engine.ProcessCompletionEngine method) nodes_with_existing_outputs() (in module capsul.pipeline.pipeline_tools) nodes_with_missing_inputs() (in module capsul.pipeline.pipeline_tools)

O

on_btn_load_json() (capsul.qt_gui.widgets.attributed_process_widget.AttributedProcessWidget method) on_btn_save_json() (capsul.qt_gui.widgets.attributed_process_widget.AttributedProcessWidget method) on_input_filename_changed() (capsul.qt_gui.widgets.attributed_process_widget.AttributedProcessWidget method) on_show_completion() (capsul.qt_gui.widgets.attributed_process_widget.AttributedProcessWidget method) on_use_fom_change() (capsul.qt_gui.widgets.attributed_process_widget.AttributedProcessWidget method) onBrowseClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onChangeViewClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onCloseTabClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onCreateViewerClicked() (capsul.qt_gui.widgets.viewer_widget.ViewerWidget method) onCurrentTabChanged() (capsul.qt_apps.main_window.CapsulMainWindow method) onHelpClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onLoadClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onLoadSubPipelineClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] onOpenProcessController() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1]

onParametersClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onQualityControlClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onRunClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onRunStatus() (capsul.qt_apps.main_window.CapsulMainWindow method) onSearchClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onStudyConfigClicked() (capsul.qt_apps.main_window.CapsulMainWindow method) onTreeSelectionChanged() (capsul.qt_apps.main_window.CapsulMainWindow method) open_background_menu() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) open_filter (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute) open_node_menu() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) open_values_attributes() (capsul.attributes.fom_completion_engine.FomPathCompletionEngine method) openProcessController() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) optional (capsul.pipeline.pipeline_nodes.Plug attribute) OptionalOutputSwitch (class in capsul.pipeline.pipeline_nodes) output (capsul.pipeline.pipeline_nodes.Plug attribute) output_directory (capsul.study_config.study_config.StudyConfig attribute)

P

paint() (capsul.qt_gui.widgets.pipeline_developer_view.NodeGWidget method) params_to_command() (capsul.process.process.Process method) parse_link() (capsul.pipeline.pipeline.Pipeline method) parse_parameter() (capsul.pipeline.pipeline.Pipeline method) path_attributes() (capsul.attributes.fom_completion_engine.FomProcessCompletionEngine method) path_metadata() (capsul.engine.database.DatabaseEngine method) (capsul.engine.database_json.JSONDBEngine method) (capsul.engine.database_populse.PopulseDBEngine method) path_translations (capsul.study_config.config_modules.somaworkflow_config.ResourceController attribute) PathCompletionEngine (class in capsul.attributes.completion_engine) PathCompletionEngineFactory (class in capsul.attributes.completion_engine) Pipeline (class in capsul.pipeline.pipeline) pipeline_definition() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_construction.ConstructedPipeline method) pipeline_link_color() (in module capsul.pipeline.pipeline_tools) pipeline_node_colors() (in module capsul.pipeline.pipeline_tools) pipeline_state() (capsul.pipeline.pipeline.Pipeline method) PipelineConstructor (class in capsul.pipeline.pipeline_construction) PipelineDeveloperView (class in capsul.qt_gui.widgets.pipeline_developer_view) PipelineDeveloperView.IterativeProcessInput (class in capsul.qt_gui.widgets.pipeline_developer_view) PipelineDeveloperView.ProcessModuleInput (class in capsul.qt_gui.widgets.pipeline_developer_view) PipelineDeveloperView.ProcessNameEdit (class in capsul.qt_gui.widgets.pipeline_developer_view) PipelineFileWarningWidget (class in capsul.qt_gui.widgets.pipeline_file_warning_widget) PipelineHelpWriter (class in capsul.sphinxext.pipelinedocgen) PipelineNode (class in capsul.pipeline.pipeline_nodes)

PipelineScene (class in capsul.qt_gui.widgets.pipeline_developer_view) PipelineUserView (class in capsul.qt_gui.widgets.pipeline_user_view) PipelineViewerApp (class in capsul.qt_apps.pipeline_viewer_app) Plug (class in capsul.pipeline.pipeline_nodes) (class in capsul.qt_gui.widgets.pipeline_developer_view) plug_clicked (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] plug_right_clicked (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] plug_tooltip_text() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineScene method) Popen (class in capsul.subprocess.fsl) (class in capsul.subprocess.spm) PopulseDBEngine (class in capsul.engine.database_populse) process (capsul.pipeline.pipeline_nodes.ProcessNode attribute) Process (class in capsul.process.process) process_clicked (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute) process_output_directory (capsul.study_config.study_config.StudyConfig attribute) ProcessAttributes (class in capsul.attributes.attributes_schema) ProcessCompletionEngine (class in capsul.attributes.completion_engine) ProcessCompletionEngineFactory (class in capsul.attributes.completion_engine) ProcessCompletionEngineIteration (class in capsul.attributes.completion_engine_iteration) ProcessIteration (class in capsul.pipeline.process_iteration) ProcessMeta (class in capsul.process.process) ProcessNode (class in capsul.pipeline.pipeline_nodes) ProcessParamError ProcessResult (class in capsul.process.process) propagate_metadata() (capsul.pipeline.pipeline.Pipeline method) protect_parameter() (capsul.pipeline.pipeline_nodes.ProcessNode method)

Q

queue (capsul.study_config.config_modules.somaworkflow_config.ResourceController attribute)

R

raise_for_status() (capsul.engine.CapsulEngine method) (in module capsul.engine.run) read_configuration() (capsul.study_config.study_config.StudyConfig method) ReduceNode (class in capsul.pipeline.custom_nodes.reduce_node) refresh_activation_from_record() (capsul.qt_gui.widgets.activation_inspector.ActivationInspector method) release_pipeline() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) remove_attributes() (capsul.attributes.completion_engine.ProcessCompletionEngine method) remove_auto_completion() (capsul.attributes.completion_engine.ProcessCompletionEngine method), [1] remove_callback_from_plug() (capsul.pipeline.pipeline_nodes.Node method) (capsul.pipeline.pipeline_nodes.ProcessNode method) remove_config() (capsul.engine.settings.SettingsSession method) remove_link() (capsul.pipeline.pipeline.Pipeline method) remove_link_from() (capsul.pipeline.topological_sort.GraphNode method), [1] remove_link_to() (capsul.pipeline.topological_sort.GraphNode method), [1] remove_node() (capsul.pipeline.pipeline.Pipeline method) remove_pipeline_step() (capsul.pipeline.pipeline.Pipeline method) remove_switch_observer() (capsul.attributes.completion_engine.SwitchCompletionEngine method)

remove_switch_observers() (capsul.attributes.completion_engine.ProcessCompletionEngine method) remove_trait() (capsul.pipeline.pipeline.Pipeline method) rename_node() (capsul.pipeline.pipeline.Pipeline method) reorder_traits() (capsul.pipeline.pipeline.Pipeline method) requirements() (capsul.pipeline.pipeline_nodes.Node method) (capsul.pipeline.pipeline_nodes.ProcessNode method) (capsul.process.process.NipypeProcess method) (capsul.process.process.Process method) reset_initial_nodes_positions() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] reset_process_counter() (capsul.study_config.study_config.StudyConfig method), [1] ResourceController (class in capsul.study_config.config_modules.somaworkflow_config) rst2html() (capsul.sphinxext.layoutdocgen.LayoutHelperWriter method) run() (capsul.process.process.Process method) (capsul.study_config.study_config.StudyConfig method), [1] run_from_commandline() (capsul.process.process.Process static method) run_process() (in module capsul.study_config.run) run_process_with_distribution() (in module capsul.process.runprocess)

S

save_configuration() (capsul.study_config.study_config.StudyConfig method) save_dot_graph() (in module capsul.pipeline.pipeline_tools) save_dot_image() (in module capsul.pipeline.pipeline_tools) save_dot_image_ui() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] save_log() (capsul.process.process.Process method) save_pipeline() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) (in module capsul.pipeline.pipeline_tools) save_pipeline_parameters() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) (in module capsul.pipeline.pipeline_tools) save_py_pipeline() (in module capsul.pipeline.python_export) save_xml_pipeline() (in module capsul.pipeline.xml) scene (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] search_in_menu() (in module capsul.qt_apps.utils.fill_treectrl) select_configurations() (capsul.engine.settings.Settings method) set_attribute() (in module capsul.attributes.attributes_schema) set_callback_on_plug() (capsul.pipeline.pipeline_nodes.Node method), [1] (capsul.pipeline.pipeline_nodes.ProcessNode method), [1] set_computing_resource_password() (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig method), [1] set_documentation() (capsul.pipeline.pipeline_construction.PipelineConstructor method) set_enable_edition() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) set_filter_pattern() (capsul.qt_gui.widgets.activation_inspector.ActivationInspector method) set_json_value() (capsul.engine.database.DatabaseEngine method) (capsul.engine.database_json.JSONDBEngine method) (capsul.engine.database_populse.PopulseDBEngine method) set_logical_view() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] set_named_directory() (capsul.engine.database.DatabaseEngine method) (capsul.engine.database_json.JSONDBEngine method) (capsul.engine.database_populse.PopulseDBEngine method) set_node_enabled() (capsul.pipeline.pipeline_construction.PipelineConstructor method) set_node_position() (capsul.pipeline.pipeline_construction.PipelineConstructor method) set_output_directory() (capsul.process.process.NipypeProcess method) set_parameter() (capsul.process.process.Process method) set_parameter_attributes() (capsul.attributes.attributes_schema.ProcessAttributes method) set_parameters() (capsul.attributes.completion_engine.ProcessCompletionEngine method), [1] set_path_metadata() (capsul.engine.database.DatabaseEngine method) (capsul.engine.database_json.JSONDBEngine method) (capsul.engine.database_populse.PopulseDBEngine method) set_pipeline() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] set_pipeline_state_from_dict() (in module capsul.pipeline.pipeline_tools) set_plug_value() (capsul.pipeline.pipeline_nodes.Node method), [1] (capsul.pipeline.pipeline_nodes.ProcessNode method), [1] set_process_param_from_str() (in module capsul.process.runprocess) set_restricted_edition_mode() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method)

set_scene_scale_factor() (capsul.pipeline.pipeline_construction.PipelineConstructor method) set_study_config() (capsul.pipeline.pipeline.Pipeline method) (capsul.pipeline.pipeline_nodes.Node method) (capsul.pipeline.pipeline_nodes.ProcessNode method) (capsul.pipeline.process_iteration.ProcessIteration method) (capsul.process.process.Process method) set_study_configuration() (capsul.study_config.study_config.StudyConfig method), [1] set_switch_value() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) set_trait_value() (capsul.study_config.study_config.StudyConfig method), [1] set_use_fom() (capsul.qt_gui.widgets.attributed_process_widget.AttributedProcessWidget method) set_usedefault() (capsul.process.process.NipypeProcess method) Settings (class in capsul.engine.settings) SettingsSession (class in capsul.engine.settings) show() (capsul.qt_apps.main_window.CapsulMainWindow method) (capsul.qt_gui.widgets.activation_inspector.ActivationInspector method) (capsul.qt_gui.widgets.links_debugger.CapsulLinkDebuggerView method) show_completion() (capsul.qt_gui.widgets.attributed_process_widget.AttributedProcessWidget method) show_optional_inputs() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) show_optional_outputs() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) SmartCachingConfig (class in capsul.study_config.config_modules.smartcaching_config) somaworkflow_computing_resource (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig attribute) somaworkflow_computing_resources_config (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig attribute) somaworkflow_config_file (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig attribute) somaworkflow_keep_failed_workflows (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig attribute) somaworkflow_keep_succeeded_workflows (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig attribute) SomaWorkflowConfig (class in capsul.study_config.config_modules.somaworkflow_config) spm_call() (in module capsul.in_context.spm) spm_check_call() (in module capsul.in_context.spm) spm_check_output() (in module capsul.in_context.spm) SPMConfig (class in capsul.study_config.config_modules.spm_config) SPMPopen (class in capsul.in_context.spm) start() (capsul.engine.CapsulEngine method) (in module capsul.engine.run) status() (capsul.engine.CapsulEngine method) (in module capsul.engine.run) StrCatNode (class in capsul.pipeline.custom_nodes.strcat_node) StrConvNode (class in capsul.pipeline.custom_nodes.strconv) string_to_value() (in module capsul.process.xml) StudyConfig (class in capsul.study_config.study_config) StudyConfigModule (class in capsul.study_config.study_config) subpipeline_clicked (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute), [1] Switch (class in capsul.pipeline.pipeline_nodes) switch_clicked (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView attribute) SwitchCompletionEngine (class in capsul.attributes.completion_engine)

T

TempFile (class in capsul.pipeline.pipeline_workflow) title_for() (capsul.sphinxext.layoutdocgen.LayoutHelperWriter method) topological_sort() (capsul.pipeline.topological_sort.Graph method), [1]

trait_from_xml() (in module capsul.process.xml) transfer_paths (capsul.study_config.config_modules.somaworkflow_config.ResourceController attribute) tuple_json_encoder() (in module capsul.study_config.memory)

U

uninstall_links_debug_handler() (capsul.pipeline.pipeline.Pipeline method) UnMemorizedProcess (class in capsul.study_config.memory) update() (capsul.qt_gui.widgets.pipeline_developer_view.Link method) (capsul.qt_gui.widgets.pipeline_user_view.PipelineUserView method) update_fom() (in module capsul.engine.module.fom)

update_labels() (capsul.qt_gui.widgets.pipeline_developer_view.NodeGWidget method) update_nodes_and_plugs_activation() (capsul.pipeline.pipeline.Pipeline method) update_pipeline_activation() (capsul.qt_gui.widgets.activation_inspector.ActivationInspector method) update_study_configuration() (capsul.study_config.study_config.StudyConfig method), [1] use_soma_workflow (capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig attribute) UseCasesHelperWriter (class in capsul.sphinxext.usecasesdocgen)

V

ViewerWidget (class in capsul.qt_gui.widgets.viewer_widget)

W

wait() (capsul.engine.CapsulEngine method) (in module capsul.engine.run) wheelEvent() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method) where_is_plug_value_from() (in module capsul.pipeline.pipeline_tools) window() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1] workflow_from_pipeline() (in module capsul.pipeline.pipeline_workflow) workflow_graph() (capsul.pipeline.pipeline.Pipeline method) workflow_list (capsul.pipeline.pipeline.Pipeline attribute) workflow_ordered_nodes() (capsul.pipeline.pipeline.Pipeline method) workflow_repr (capsul.pipeline.pipeline.Pipeline attribute) workflow_run() (in module capsul.pipeline.pipeline_workflow)

WorkflowExecutionError write_api_docs() (capsul.sphinxext.pipelinedocgen.PipelineHelpWriter method) write_fake_pipeline() (in module capsul.pipeline.pipeline_tools) write_fake_process() (in module capsul.pipeline.pipeline_tools) write_index() (capsul.sphinxext.layoutdocgen.LayoutHelperWriter method) (capsul.sphinxext.pipelinedocgen.PipelineHelpWriter method) (capsul.sphinxext.usecasesdocgen.UseCasesHelperWriter method) write_installation() (capsul.sphinxext.layoutdocgen.LayoutHelperWriter method) write_layout() (capsul.sphinxext.layoutdocgen.LayoutHelperWriter method) write_main_index() (capsul.sphinxext.pipelinedocgen.PipelineHelpWriter method) write_usecases_docs() (capsul.sphinxext.usecasesdocgen.UseCasesHelperWriter method)

X

xml_process() (in module capsul.process.xml)

XMLProcess (class in capsul.process.xml)

Z

zoom_in() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1]

zoom_out() (capsul.qt_gui.widgets.pipeline_developer_view.PipelineDeveloperView method), [1]