Usage: AimsT1mapVFA.py [options]

Processing of Cortical thickness attributes in Cortical Folds Graph

Options:
  -h, --help            show this help message and exit
  -t T1_LOWANGLE, --t1_low=T1_LOWANGLE
                        first GRE T1 with lower angle
  -u T1_HIGHANGLE, --t1_high=T1_HIGHANGLE
                        second GRE T1 with higher angle
  -a BAFI_AMPL, --bafi_amplitude=BAFI_AMPL
                        BAFI, amplitude map
  -p BAFI_PHASE, --bafi_phase=BAFI_PHASE
                        BAFI, phase map
  -o OUTPUT_T1MAP, --output=OUTPUT_T1MAP
                        output T1 mapping image
  -s SMOOTH_TYPE, --smoothtype=SMOOTH_TYPE
                        extrapolation / smoothing type for B1 map. allowed
                        values: nearest, linear, masked_linear, polynomial,
                        median, dilated. default: linear
  -g GAUSSIAN, --gaussian=GAUSSIAN
                        additional gaussian smoothing for the B1 correction
                        map. default: 0mm: not applied
  --inv                 invert T1 map image to look like a T1-weighted
  --out_b1map_raw=OUT_B1MAP_RAW
                        output the raw B1 map in the specified file
  --out_b1map_median=OUT_B1MAP_MEDIAN
                        output the B1 map with median filter in the specified
                        file (if median option is used)
  --out_b1map=OUT_B1MAP
                        output the final B1 map in the specified file