AimsMultiRecal
    --------------

Compute registrations between two 2D or 3D volumes

Options :

-r <string>
    input reference data

-t <string>
    input test data

[ --roi <string> ]
    input roi test data (default : connex components research)

[ -o <string> ]
    output data

[ -m <string> ]
    initialisation motion (default = identity)

[ --start <S32> ]
    starting pyramid level (default = auto)

[ --stop <S32> ]
    end pyramid level (default = auto)

[ --transfo <S32> ]
    transformation type : 1 for rigid, 2 for similitude, 3 for affine (default
    = 1)

[ --Xsize <S16> ]
    x size of the bloc in voxel (default = 4)

[ --Ysize <S16> ]
    y size of the bloc in voxel (default = 4)

[ --Zsize <S16> ]
    z size of the bloc in voxel (default = 4)

[ --cutVar <DOUBLE> ]
    initial % of the blocks with highest variance kept (default=auto)

[ --stopVar <DOUBLE> ]
    minimum of this % of blocks kept (default=auto)

[ --%kept <DOUBLE> ]
    % of blocks of lowest residuals kepts for the robust estimation
    (default=0.5)

[ --radius <FLOAT> ]
    radius of the maximum erosion in voxels (default = 5)

[ --correlThresh <DOUBLE> ]
    threshold on the similarity criterion norm (default=-1, no threshold)

[ --lthRef <S16> ]
    low grey level threshhold on ref image (default = -100000)

[ --hthRef <S16> ]
    high grey level threshhold on ref image (default = +100000)

[ --lthTest <S16> ]
    low grey level threshhold on test image (default = -100000)

[ --hthTest <S16> ]
    high grey level threshhold on test image (default = +100000)

[ --iter <S32> ]
    maximum number of iterations per pyramid level (default=3)

[ --field <string> ]
    Displacement field (sorry, not active)

[ --Info <string> ]
    list all the initial parameters : y or n (default=y)

[ --output_4d_volumes <S32> ]
    Write 4D images as several 3D files (0 = series of 3D volumes, 1 = one 4D
    volume, no value = use .aimsrc configuration files)

[ --debugLevel <S32> ]
    Set debug information level (default = 0)

[ --verbose [ <S32> ] ]
    Set verbosity level (default = 0, without value = 1)

[ -h | --help <boolean> ]
    show help message

[ --version <boolean> ]
    show Cartograph version

[ --info <boolean> ]
    show libraries information (install, plugins, paths, etc.)

[ --optionsfile <string> ]
    Read additional commandline options from the specified file (one switch or
    value per line)