Usage: sulciDistanceToLesion.py [options]

calculates a distance map from a lesion in the brain, and mean distance from
the lesion to all sulci. If the distance map is already calcualted, it can be
specified as input using the --indistance parameter, instead of the lesionfile
and brainfile.

Options:
  -h, --help            show this help message and exit
  -l LESIONFILE, --lesion=LESIONFILE
                        input lesion mask
  -L LGW, --lgreywhite=LGW
                        left grey/white mask
  -R RGW, --rgreywhite=RGW
                        right grey/white mask
  --lsk=LSK             left sulci skeleton (optional) used to avoid crossing
                        sulci
  --rsk=RSK             right sulci skeleton (optional) used to avoid crossing
                        sulci
  -o OUTPUTCSV, --output=OUTPUTCSV
                        output CSV file
  -g GRAPHS, --graph=GRAPHS
                        sulci graph files, several can be specified (generally
                        left and right hemispheres)
  --indistance=INDISTFILE
                        input distance map image, recalculated if not
                        specified
  -d DISTFILE, --distance=DISTFILE
                        output distance map image, not written if not
                        specified
  --labelatt=LABEL      label attribute (label or name), default: guessed if
                        specified in graphs, or take label
  -s SUBJECT, --subject=SUBJECT
                        subject name to write in CSV output. If not specified
                        it will not be written
  -t TRANSLATION, --translation=TRANSLATION
                        labels translation: may be a .trl translation map, a
                        selection (.sel), or a nomenclature (.hie)
  --modeltrans=MODELTRANSLATION
                        model graph used for labels translation, used in
                        combination of the translation file, especially if the
                        latter is a nomenclature. Wen using aselection, the
                        model graph sould not be specified, and when using a
                        .trl translation, it is generally not so useful.