[Volume] Block Matching

None

Parameters

Input_Reference_Volume: 3D Volume ( input )

Input_Reference_Mask: 3D Volume ( optional, input )

Channel_Reference: Choice ( optional, input )

Input_ToRegister_Volume: 3D Volume ( input )

Input_ToRegister_Mask: 3D Volume ( optional, input )

Channel_ToRegister: Choice ( optional, input )

Input_Init_Motion: Transformation matrix ( optional, input )

Write_Motion: Boolean ( optional, input )

Output_Motion_Directory: Directory ( optional, input )

Output_Motion: Transformation matrix ( optional, output )

Write_Registered_Volume: Boolean ( optional, input )

Output_Volume_Directory: Directory ( optional, input )

Output_Registered_Volume: 3D Volume ( optional, output )

Transformation_Type: Choice ( optional, input )

Start_Level: Integer ( optional, input )

Stop_Level: Integer ( optional, input )

Block_Size_X: Integer ( optional, input )

Block_Size_Y: Integer ( optional, input )

Block_Size_Z: Integer ( optional, input )

Invert_Output_Motion: Boolean ( optional, input )

Background_Value: String ( optional, input )

Pct_MaxVar: Float ( optional, input )

Min_MaxVar: Float ( optional, input )

Pct_MinVar: Float ( optional, input )

Correlation_Th: Float ( optional, input )

Low_Ref_Th: Float ( optional, input )

High_Ref_Th: Float ( optional, input )

Low_TR_Th: Float ( optional, input )

High_TR_Th: Float ( optional, input )

Max_Iter: Integer ( optional, input )

Info: Boolean ( optional, input )

Debug_Level: Integer ( optional, input )

Verbose: Boolean ( optional, input )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : BasicBlockMatching

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/basic/Bio/BasicBlockMatching.py

Supported file formats :

Input_Reference_Volume :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Reference_Mask :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_ToRegister_Volume :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_ToRegister_Mask :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Init_Motion :

Transformation matrix, Transformation matrix

Output_Motion_Directory :

Directory, Directory

Output_Motion :

Transformation matrix, Transformation matrix

Output_Volume_Directory :

Directory, Directory

Output_Registered_Volume :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image