Cropping a list of images and labels

This process is used in the 3D photographic reconstruction project . It enables to crop and initialize the list of photos relative to the embedding medium.

The cropping process.

Parameters

Input_ListOf_Image: ListOf( 3D Volume ) ( input )

Select the input list of bounding box files

Input_ListOf_Label: ListOf( 3D Volume ) ( optional, input )

Select the multiple labeled images to be cropping

Input_ListOf_BoundingBox: ListOf( Text file ) ( input )

Output_ListOf_Image: ListOf( 3D Volume ) ( output )

Specify the output list of images

Output_ListOf_Label: ListOf( 3D Volume ) ( optional, output )

Specify the output list of images label corresponding to the result of the segmentation by biovision process

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : CropListOfImage

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/CropListOfImage.py

Supported file formats :

Input_ListOf_Image :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_ListOf_Label :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_ListOf_BoundingBox :

Minf, Minf

Output_ListOf_Image :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_ListOf_Label :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image