DICE index

DICE index calculation on a set of images

Description

DICE index (2*intersection / union) is calculated for a set of label images. Each object (image value) has its DICE calculated for each pair of images. The output is a symmetric table, where each image is crossed to each other, for each object.

Parameters

label_images: ListOf( Label volume ) ( input )

csv_output: CSV file ( output )

image_labels: ListOf( String ) ( input )

names of table headers in the csv_output

output_format: Choice ( input )

reference_space_image: Label volume ( optional, input )

transformations: ListOf( ListOf( Transformation matrix ) ) ( optional, input )

Technical information

Toolbox : Tools

User level : 0

Identifier : diceIndex

File name : brainvisa/toolboxes/tools/processes/roi/diceIndex.py

Supported file formats :

label_images :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

csv_output :

CSV file, CSV file

reference_space_image :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

transformations :

Transformation matrix, Transformation matrix