Swap and flip hemispheres

This is for the purpose of using left-right flipped brains in your DISCO or DISCO+DARTEL registration, e.g. if you aim for a symmetric template.

0. Run 00. Copy DISCO/DARTEL inputs in a compatible format before using Flip hemisphere.

1. Select the Lgraph of your DISCO Analysis to flip.

Your flipped subjects will be saved as new subjects and can now be used for your registration.

Parameters

Lgraph: ListOf( Labelled Cortical folds graph ) ( input )

Rgraph: ListOf( Labelled Cortical folds graph ) ( input )

t1mri_nobias: ListOf( T1 MRI Bias Corrected ) ( input )

Lgrey_white: ListOf( Morphologist Grey White Mask ) ( input )

Rgrey_white: ListOf( Morphologist Grey White Mask ) ( input )

Lwhite_mesh: ListOf( Hemisphere White Mesh ) ( input )

Rwhite_mesh: ListOf( Hemisphere White Mesh ) ( input )

Lpial_mesh: ListOf( Hemisphere Mesh ) ( input )

Rpial_mesh: ListOf( Hemisphere Mesh ) ( input )

new_Lgraph: ListOf( Labelled Cortical folds graph ) ( output )

new_Rgraph: ListOf( Labelled Cortical folds graph ) ( output )

new_t1mri_nobias: ListOf( T1 MRI Bias Corrected ) ( output )

new_Lgrey_white: ListOf( Morphologist Grey White Mask ) ( output )

new_Rgrey_white: ListOf( Morphologist Grey White Mask ) ( output )

new_Lwhite_mesh: ListOf( Hemisphere White Mesh ) ( output )

new_Rwhite_mesh: ListOf( Hemisphere White Mesh ) ( output )

new_Lpial_mesh: ListOf( Hemisphere Mesh ) ( output )

new_Rpial_mesh: ListOf( Hemisphere Mesh ) ( output )

Technical information

Toolbox : Disco

User level : 0

Identifier : flip_hemi

File name : brainvisa/toolboxes/disco/processes/Preprocessing/flip_hemi.py

Supported file formats :

Lgraph :

Graph and data, Graph and data

Rgraph :

Graph and data, Graph and data

t1mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Lgrey_white :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

Rgrey_white :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

Lwhite_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

Rwhite_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

Lpial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

Rpial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

new_Lgraph :

Graph and data, Graph and data

new_Rgraph :

Graph and data, Graph and data

new_t1mri_nobias :

NIFTI-1 image, NIFTI-1 image

new_Lgrey_white :

NIFTI-1 image, NIFTI-1 image

new_Rgrey_white :

NIFTI-1 image, NIFTI-1 image

new_Lwhite_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

new_Rwhite_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

new_Lpial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

new_Rpial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh