Astrocyte: Threshold Segmentation

None

Paramètres

Input_Volume: Volume 3D ( entrée )

Voxel_Size: ListOf( Réel ) ( optional, input )

Component_Min_Size: Entier ( input )

Component_Max_Size: Entier ( input )

Filter_Size: ListOf( Entier ) ( input )

Threshold: Entier ( input )

Map_Voxel_Size: ListOf( Réel ) ( input )

Process_All: Booléen ( optional, input )

Verbose: Booléen ( optional, input )

Output_Directory: Répertoire ( optional, sortie )

Output_Format: Choice ( optional, input )

Output_Background_Volume: Volume 3D ( sortie )

Output_Labels_Volume: Volume 3D ( sortie )

Output_Features_Volume: Volume 3D ( optional, sortie )

Output_Map_Volume: Volume 3D ( optional, sortie )

Informations techniques

Toolbox : Bioprocessing

Niveau d'utilisateur : 3

Identifiant : AstrocyteThresholdSegmentation

Nom de fichier : brainvisa/toolboxes/bioprocessing/processes/research/projects/astrocytes/AstrocyteThresholdSegmentation.py

Supported file formats :

Input_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Directory :

Répertoire, Répertoire

Output_Background_Volume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Labels_Volume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Features_Volume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Map_Volume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image