Maillage de la tête

Extraction of the head scalp

Paramètres

t1mri_nobias: IRM T1 Biais Corrigé ( entrée )

histo_analysis: Analyse d'histogramme ( optional, entrée )

head_mesh: Maillage de la tête ( sortie )

Output mesh for the scalp

head_mask: Head Mask ( optional, sortie )

Mask volume of the segmented head. If it is omitted or keep_head_mask is false (which is the default), the mask is not kept in the database: only the mesh is stored in the database.

keep_head_mask: Booléen ( input )

If false, the head mask is not stored into the database

remove_mask: Volume 3D ( optional, entrée )

Mask of voxels to exclude from the segmentation. Useful to manually remove sharp edges induced by artefacts

first_slice: Entier ( optional, input )

Optionally removes a number of sliced at the bottom of the image (where the signam is generally not very contrasted)

threshold: Entier ( optional, input )

By default the threshold is automatically computed from the image histogram

closing: Réel ( optional, input )

threshold_mode: Choice ( input )

Informations techniques

Toolbox : Morphologist

Niveau d'utilisateur : 0

Identifiant : headMesh

Nom de fichier : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/headMesh.py

Supported file formats :

t1mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

histo_analysis :

Analyse d'histogramme, Analyse d'histogramme

head_mesh :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

head_mask :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

remove_mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image