Transformation

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Inheritance graph

Defined in file : brainvisa/types/registration.py

Used in the following processes

Anatomist Show Descriptive Model
Import volBrain processes results
Import volBrain results
Morphologist from Freesurfer
Run AssemblyNet
Show Models With Sulci For Manual Labeling

Associated formats

Text file
Transformation matrix

Associated ontology rules

  • brainvisa-3.2.0 :
    • {center}/{subject}/volBrain/{acquisition}/mni/<subject>_affine_transformation
    {center}/{subject}/assemblyNet/{acquisition}/matrix_affine_native_to_mni_<subject>
    {center}/{subject}/vol2Brain/{acquisition}/matrix_affine_native_to_mni_<subject>
  • shared :
    • models/models_{sulci_database}/descriptive_models/segments/{sulci_segments_model_type}_left/meshes/Lwhite_TO_global_spam

    Key attributes

  • PetPhantom :
    • phantom ,  center ,  acquisition ,  reconstruction
  • brainvisa-3.0 :
    • protocol ,  subject ,  acquisition ,  filename_variable ,  source.subject ,  source.acquisition ,  dest.subject ,  dest.acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  filename_variable ,  sulcus
  • brainvisa-3.2.0 :
    • time_duration ,  rescan ,  mapped ,  acquisition_date ,  contrast ,  time_point ,  center ,  subject ,  acquisition ,  modality ,  source.acquisition ,  destination.acquisition ,  Study ,  analysis ,  graph_version ,  sulci_recognition_session ,  manually_labelled ,  automatically_labelled ,  side ,  research_group ,  subject_age ,  tracer ,  reconstruction_diameter ,  processing ,  segmentation_method ,  study ,  scan_session ,  marker ,  specie ,  scan_number ,  slice_number ,  serie ,  Template ,  photo_number ,  filename_variable ,  sulcus ,  transformation ,  direction
  • connectomist-1.0 :
    • subject
  • freesurfer :
    • subject
  • freesurfer-bids :
    • subject ,  acquisition
  • morphologist-bids-1.0 :
    • time_duration ,  rescan ,  acquisition_date ,  time_point ,  subject ,  session ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  filename_variable ,  sulcus
  • morphologist-bids-2.0 :
    • time_duration ,  rescan ,  acquisition_date ,  time_point ,  subject ,  session ,  bids ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  filename_variable ,  sulcus
  • shared :
    • sulci_database ,  sulci_segments_model_type ,  filename_variable