__docformat__ = "epytext en"
import os
from soma.configuration import ConfigurationGroup
from soma.signature.api import Signature, FileName
#------------------------------------------------------------------------------
[docs]
class SPMConfiguration(ConfigurationGroup):
label = 'SPM'
icon = 'matlab.png'
signature = Signature(
'spm12_path', FileName(directoryOnly=True, readOnly=True), dict(
defaultValue='', doc='location of SPM 12 installation directory'),
'spm12_standalone_command', FileName(directoryOnly=False, readOnly=True), dict(
defaultValue='', doc='location of SPM 12 standalone (compiled) run script'),
'spm12_standalone_mcr_path', FileName(directoryOnly=True, readOnly=True), dict(
defaultValue='', doc='location of SPM 12 standalone MCR directory (generally ./spm12-standalone/mcr/v713'),
'spm12_standalone_path', FileName(directoryOnly=True, readOnly=True), dict(
defaultValue='', doc='location of SPM 12 standalone directory where the templates directory can be found.(Maybe ./spm12-standalone/spm12_mcr/spm12)'),
'spm8_path', FileName(directoryOnly=True, readOnly=True), dict(
defaultValue='', doc='location of SPM 8 installation directory'),
'spm8_standalone_command', FileName(directoryOnly=False, readOnly=True), dict(
defaultValue='', doc='location of SPM 8 standalone (compiled) run script'),
'spm8_standalone_mcr_path', FileName(directoryOnly=True, readOnly=True), dict(
defaultValue='', doc='location of SPM 8 standalone MCR directory (generally <spm8>/standalone/mcr/v713'),
'spm8_standalone_path', FileName(directoryOnly=True, readOnly=True), dict(
defaultValue='', doc='location of SPM 8 standalone directory where the templates directory can be found.'),
'spm8_wfu_pickatlas_path', FileName(directoryOnly=True, readOnly=True), dict(
defaultValue='', doc='location of SPM8 WFU PickAtlas directory where the atlases can be found.'),
'spm5_path', FileName(directoryOnly=True, readOnly=True), dict(
defaultValue='', doc='location of SPM 5 installation directory'),
)
def __init__(self, *args, **kwargs):
super(SPMConfiguration, self).__init__(*args, **kwargs)
conda_prefix = os.environ.get('CONDA_PREFIX')
if conda_prefix:
spm12_path = os.path.join(conda_prefix, 'spm12')
if os.path.exists(spm12_path) and not self.spm12_path and not self.spm12_standalone_path:
self.spm12_standalone_path = os.path.join(spm12_path, 'spm12_mcr', 'spm', 'spm12')
self.spm12_standalone_command = os.path.join(spm12_path, 'run_spm12.sh')
self.spm12_standalone_mcr_path = os.path.join(conda_prefix, 'MATLAB', 'MATLAB_Runtime', 'v97')
