Gyral Parcellation

None

Parameters

Side: Choice ( input )

Projection: Choice ( input )

Parcellation: Choice ( input )

Lgraph: Labelled Cortical folds graph ( optional, input )

Rgraph: Labelled Cortical folds graph ( optional, input )

mri_corrected: T1 MRI Bias Corrected ( input )

sulcus_identification: Choice ( input )

translation: Label translation ( input )

gyri_model: Gyri Model ( input )

sulci_label_to_sulci_name: Sulci To White Texture Translation ( output )

left_gyri_label_to_gyri_name: Gyri To White Texture Translation ( output )

right_gyri_label_to_gyri_name: Gyri To White Texture Translation ( output )

left_white_mesh: Left Hemisphere White Mesh ( optional, input )

right_white_mesh: Right Hemisphere White Mesh ( optional, input )

left_hemi_mesh: Left Hemisphere Mesh ( optional, input )

right_hemi_mesh: Right Hemisphere Mesh ( optional, input )

left_grey_white: Left Grey White Mask ( optional, input )

right_grey_white: Right Grey White Mask ( optional, input )

left_white_sulci: Sulci White Texture ( optional, output )

right_white_sulci: Sulci White Texture ( optional, output )

left_white_gyri: Gyri White Texture ( optional, output )

right_white_gyri: Gyri White Texture ( optional, output )

left_gyri_graph: Gyri Graph ( optional, output )

right_gyri_graph: Gyri Graph ( optional, output )

left_white_gyri_volume: Gyri White Volume ( optional, output )

right_white_gyri_volume: Gyri White Volume ( optional, output )

Technical information

Toolbox : Cortical Surface

User level : 2

Identifier : 2DWhiteMatterParcellation

File name : brainvisa/toolboxes/cortical_surface/processes/miscellaneous/oldProcesses/2DWhiteMatterParcellation.py

Supported file formats :

Lgraph :

Graph and data, Graph and data

Rgraph :

Graph and data, Graph and data

mri_corrected :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

translation :

Label Translation, Label Translation

gyri_model :

Gyri Model, Gyri Model

sulci_label_to_sulci_name :

Text file, Text file

left_gyri_label_to_gyri_name :

Text file, Text file

right_gyri_label_to_gyri_name :

Text file, Text file

left_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

right_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

left_hemi_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

right_hemi_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

left_grey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

right_grey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

left_white_sulci :

GIFTI file, GIFTI file, Texture

right_white_sulci :

GIFTI file, GIFTI file, Texture

left_white_gyri :

GIFTI file, GIFTI file, Texture

right_white_gyri :

GIFTI file, GIFTI file, Texture

left_gyri_graph :

Graph and data, Graph and data

right_gyri_graph :

Graph and data, Graph and data

left_white_gyri_volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

right_white_gyri_volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image