Validation Pipeline

Control panel of the validation processes

Parameters

T1mri: Raw T1 MRI ( input )

validation_total: Choice ( input )

mri_corrected: T1 MRI Bias Corrected ( input )

validation_mri_corrected: Choice ( input )

histo_analysis: Histo Analysis ( optional, input )

validation_histo_analysis: Choice ( input )

brain_mask: T1 Brain Mask ( optional, input )

validation_brain_mask: Choice ( input )

split_mask: Split Brain Mask ( optional, input )

validation_split_mask: Choice ( input )

left_hemi_mesh: Left Hemisphere Mesh ( optional, input )

validation_left_hemi_mesh: Choice ( input )

right_hemi_mesh: Right Hemisphere Mesh ( optional, input )

validation_right_hemi_mesh: Choice ( input )

left_white_mesh: Left Hemisphere White Mesh ( optional, input )

validation_left_white_mesh: Choice ( input )

right_white_mesh: Right Hemisphere White Mesh ( optional, input )

validation_right_white_mesh: Choice ( input )

Technical information

Toolbox : Morphologist

User level : 0

Identifier : AnaValidateAll

File name : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components_obsolete/validation/AnaValidateAll.py

Supported file formats :

T1mri :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

mri_corrected :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

histo_analysis :

Histo Analysis, Histo Analysis

brain_mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

split_mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

left_hemi_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

right_hemi_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

left_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

right_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh